TCONS_00016445 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016445
Unique NameTCONS_00016445
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016445 ID=TCONS_00016445|Name=TCONS_00016445|organism=Clytia hemisphaerica|type=transcript|length=389bp
CAGGTGTACAATCAGTAATACTATCAATTTTTGCTATCATTGCAGAAAGG
AGTTCTTGTAATTCAGGTGCTTCAGATTTGTGGTCTGAATTGTTGGGTTG
TCTGTAGATAACACAGAGaagaatattaaatttttttgataaaagcatca
ATGCTTCATTTACTCCGTTCGAGAATTCCAAAATGGGCTCGAAGAATGGT
GCAATGACATTACGCACATAAAATGCAACGCCTCCGCTTGCTCTGCCATA
TTTCGATTTTACTCTGTCtctgtttttcttaaaaaaagtgtaattttcAA
TCTCAAGTTCTCCTTTTTTGTGATTGTCCGTTAACCAGGTTTCGGTTAAG
CCTAAAAACAGTTGTTTTGAGCTTTTTGTAAGATCTTTG
Run BLAST on NCBI

protein sequence of TCONS_00016445-protein

>TCONS_00016445-protein ID=TCONS_00016445-protein|Name=TCONS_00016445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
KDLTKSSKQLFLGLTETWLTDNHKKGELEIENYTFFKKNRDRVKSKYGRA
SGGVAFYVRNVIAPFFEPILEFSNGVNEALMLLSKKFNILLCVIYRQPNN
SDHKSEAPELQELLSAMIAKIDSITDCTP
Run BLAST on NCBI

transcript from alignment at sc0000237:109069..109457

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016445 ID=TCONS_00016445|Name=TCONS_00016445|organism=Clytia hemisphaerica|type=transcript|length=389bp|location=Sequence derived from alignment at sc0000237:109069..109457 (Clytia hemisphaerica)
CAAAGATCTTACAAAAAGCTCAAAACAACTGTTTTTAGGCTTAACCGAAA
CCTGGTTAACGGACAATCACAAAAAAGGAGAACTTGAGATTgaaaattac
actttttttaagaaaaacagaGACAGAGTAAAATCGAAATATGGCAGAGC
AAGCGGAGGCGTTGCATTTTATGTGCGTAATGTCATTGCACCATTCTTCG
AGCCCATTTTGGAATTCTCGAACGGAGTAAATGAAGCATtgatgctttta
tcaaaaaaatttaatattcttCTCTGTGTTATCTACAGACAACCCAACAA
TTCAGACCACAAATCTGAAGCACCTGAATTACAAGAACTCCTTTCTGCAA
TGATAGCAAAAATTGATAGTATTACTGATTGTACACCTG

Coding sequence (CDS) from alignment at sc0000237:109069..109457

>TCONS_00016445 ID=TCONS_00016445|Name=TCONS_00016445|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0000237:109069..109457 (Clytia hemisphaerica)
AAAGATCTTACAAAAAGCTCAAAACAACTGTTTTTAGGCTTAACCGAAAC
CTGGTTAACGGACAATCACAAAAAAGGAGAACTTGAGATTgaaaattaca
ctttttttaagaaaaacagaGACAGAGTAAAATCGAAATATGGCAGAGCA
AGCGGAGGCGTTGCATTTTATGTGCGTAATGTCATTGCACCATTCTTCGA
GCCCATTTTGGAATTCTCGAACGGAGTAAATGAAGCATtgatgcttttat
caaaaaaatttaatattcttCTCTGTGTTATCTACAGACAACCCAACAAT
TCAGACCACAAATCTGAAGCACCTGAATTACAAGAACTCCTTTCTGCAAT
GATAGCAAAAATTGATAGTATTACTGATTGTACACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009182XLOC_009182Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016445-proteinTCONS_00016445-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016445-exon-sc0000237-1491911889:109069..109457TCONS_00016445-exon-sc0000237-1491911889:109069..109457Clytia hemisphaericaexon
TCONS_00016445-exon-sc0000237-1510915933:109069..109457TCONS_00016445-exon-sc0000237-1510915933:109069..109457Clytia hemisphaericaexon
TCONS_00016445-exon-sc0000237-1575043694:109069..109457TCONS_00016445-exon-sc0000237-1575043694:109069..109457Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000237supercontigsc0000237:109069..109457 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.769847	0.373814	1.26865	2.74097	1.9278	1.01789	2.43791	2.02165	1.38425	2.57714	1.95105	2.13598	1.64475	3.29435	1.09685	0.929275	1.86227	1.14661	1.77697	1.78916	2.30191	0.64241	0	1.56383	4.01952	3.73507	2.62057	1.37297	1.41438	3.27832
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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