TCONS_00016443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016443
Unique NameTCONS_00016443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016443 ID=TCONS_00016443|Name=TCONS_00016443|organism=Clytia hemisphaerica|type=transcript|length=363bp
NTCACCTGCTATGAAGATGTCTGGTGTTTTTCCTTCAGTTTTGTCTAGTT
CTGATTTAATTAACTCTATAACTGGTTTGAATTGTTCATTCTTAGATGGA
TTTCCGTTTGACGAGTCGTCTGGCTGTCGGTATATTCCCCATATTTGGAT
ATCCAATGTAGTCGAACTCAGACAGATGACTTCGATGACGCCATTTGAGT
GTGTAACGGTCTGTTTGAAGTGTGATGAAATATCTTCTCTCATGTATATA
GCGACACCACCACTACATCTTCCAAATCGTGACTTTGNTCTTTGGGAGGT
TCTCATTAGCACAGTGATCACAAAGGTAGTAGAGGTTTTTGATGTTATGT
GGATTAATGATAT
Run BLAST on NCBI

protein sequence of TCONS_00016443-protein

>TCONS_00016443-protein ID=TCONS_00016443-protein|Name=TCONS_00016443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
ISLIHITSKTSTTFVITVLMRTSQRXKSRFGRCSGGVAIYMREDISSHFK
QTVTHSNGVIEVICLSSTTLDIQIWGIYRQPDDSSNGNPSKNEQFKPVIE
LIKSELDKTEGKTPDIFIAGX
Run BLAST on NCBI

transcript from alignment at sc0000237:14435..14797

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016443 ID=TCONS_00016443|Name=TCONS_00016443|organism=Clytia hemisphaerica|type=transcript|length=363bp|location=Sequence derived from alignment at sc0000237:14435..14797 (Clytia hemisphaerica)
ATATCATTAATCCACATAACATCAAAAACCTCTACTACCTTTGTGATCAC
TGTGCTAATGAGAACCTCCCAAAGANCAAAGTCACGATTTGGAAGATGTA
GTGGTGGTGTCGCTATATACATGAGAGAAGATATTTCATCACACTTCAAA
CAGACCGTTACACACTCAAATGGCGTCATCGAAGTCATCTGTCTGAGTTC
GACTACATTGGATATCCAAATATGGGGAATATACCGACAGCCAGACGACT
CGTCAAACGGAAATCCATCTAAGAATGAACAATTCAAACCAGTTATAGAG
TTAATTAAATCAGAACTAGACAAAACTGAAGGAAAAACACCAGACATCTT
CATAGCAGGTGAN

Coding sequence (CDS) from alignment at sc0000237:14435..14797

>TCONS_00016443 ID=TCONS_00016443|Name=TCONS_00016443|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at sc0000237:14435..14797 (Clytia hemisphaerica)
ATATCATTAATCCACATAACATCAAAAACCTCTACTACCTTTGTGATCAC
TGTGCTAATGAGAACCTCCCAAAGANCAAAGTCACGATTTGGAAGATGTA
GTGGTGGTGTCGCTATATACATGAGAGAAGATATTTCATCACACTTCAAA
CAGACCGTTACACACTCAAATGGCGTCATCGAAGTCATCTGTCTGAGTTC
GACTACATTGGATATCCAAATATGGGGAATATACCGACAGCCAGACGACT
CGTCAAACGGAAATCCATCTAAGAATGAACAATTCAAACCAGTTATAGAG
TTAATTAAATCAGAACTAGACAAAACTGAAGGAAAAACACCAGACATCTT
CATAGCAGGTGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009180XLOC_009180Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016443-exon-sc0000237-1491911889:14435..14797TCONS_00016443-exon-sc0000237-1491911889:14435..14797Clytia hemisphaericaexon
TCONS_00016443-exon-sc0000237-1510915933:14435..14797TCONS_00016443-exon-sc0000237-1510915933:14435..14797Clytia hemisphaericaexon
TCONS_00016443-exon-sc0000237-1575043694:14435..14797TCONS_00016443-exon-sc0000237-1575043694:14435..14797Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016443-proteinTCONS_00016443-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000237supercontigsc0000237:14435..14797 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.8973	4.07474	7.59358	6.53523	9.74895	5.27884	9.18168	12.4744	4.41547	4.70732	5.51172	6.24942	3.22006	4.22362	2.39365	3.63256	2.89665	2.23925	1.5502	1.8781	4.09048	2.92177	1.77252	2.48755	11.9522	6.53553	3.85177	5.59758	2.44002	4.56416
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top