TCONS_00016440 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016440
Unique NameTCONS_00016440
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length985

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016440 ID=TCONS_00016440|Name=TCONS_00016440|organism=Clytia hemisphaerica|type=transcript|length=985bp
ccattttcaattttgtatttACTATCTTCTTGCCCTTGTGCTACTCAAGT
GACTGCTGAATGAAAGATATGCGTGAAGCTCCATCTCCTAGTCAATTTAT
CAACCAATCAATATCGTTTTGGAAGgaattagccaatcaaattacaTCTT
AAAACGCGCCACTGAAATAATTTGATCTCCTTCTcggagattttgaaaaa
ttattgataattcCGGTTTTTCCCGATCGGGCTACGTTTTCTATCAAATT
actgataaataaaaaaaaaggcaTAGTTAAATGCTGAAATAGAGTTAAAG
CTTGAAATAAGTATATATAATTTGTAGAAGCATGGTAAAATTTTACTGAT
AAGTTAATCTAacacaaaaacagaaaattatCAAGAAAATCAAAGGAAGC
CCGATAGCAATCCGatattttaaatcaaaacacaGGCTTTTGGCTCGTAG
ACGTGTTCCAcagcacaagaaaaaaaaaattaaaatggcgaCCGAAGAAC
GAAATATCGAAAACATTGACCTTGCTGAAGAATCAAAGGATATCAATGGT
GTCCCTACAGATCCATTGACAGAAGAAAGGAGAGAAGAAATTATTGTTGA
AGTAACTAAGTTAGAAGATGAAATCAAGACGTTGAGACAAGCACTTTTAC
GTAAAGAAACACAACTCAATAACTTAAGAACAGAGCTAGGTGAAACAAGA
TGGGCAAGACTTCAAAACTCTCAGGCcgTACAAAAATCAAAGCAAGCAAT
TTCAGATGCTGGAAACAAAACATCACAGGCATTGAAAAATGTTGGAAATA
TAACTGCTAGCAAATGGCAAGAAATTAAAGAATCACAACGCTACCAAAAT
GTATCTGAACGATTTTGGAGTACAACTGGGGCAGTTAAGatgaaattttt
cgGAATGCCTTTAAGACAATCGATAACGGGAGTGCCAGCTGGAAGTAGCA
GTTTATAACCAATGAGTCAATTGAcattaaaatat
Run BLAST on NCBI

transcript from alignment at sc0000237:393380..398038-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016440 ID=TCONS_00016440|Name=TCONS_00016440|organism=Clytia hemisphaerica|type=transcript|length=4659bp|location=Sequence derived from alignment at sc0000237:393380..398038- (Clytia hemisphaerica)
CCATTTTCAATTTTGTATTTACTATCTTCTTGCCCTTGTGCTACTCAAGT
GACTGCTGAATGAAAGATATGCGTGAAGCTCCATCTCCTAGTCAATTTAT
CAACCAATCAATATCGTTTTGGAAGGAATTAGCCAATCAAATTACATCTT
AAAACGCGCCACTGAAATAATTTGATCTCCTTCTCGGAGATTTTGAAAAA
TTATTGATAATTCCGGTTTTTCCCGATCGGGCTACGTTTTCTATCAAATT
ACTGATAAATAAAAAAAAAGGCATAGTTAAATGCTGAAATAGAGTTAAAG
CTTGAAATAAGTATATATAATTTGTAGAAGCATGGTAAAATTTTACTGAT
AAGTTAATCTAACACAAAAACAGAAAATTATCAAGAAAATCAAAGGAAGC
CCGATAGCAATCCGATATTTTAAATCAAAACACAGGCTTTTGGCTCGTAG
ACGTGTTCCACAGCACAAGAAAAAAAAAATTAAAATGGCGACCGAAGAAC
GAAATATCGAAAACATTGACCTTGCTGAAGAATCAAAGGATATCAATGGT
GTCCCTACAGATCCATTGACAGAAGAAAGGAGAGAAGAAATTATTGTTGA
AGTAACTAAGGTGAAAATTTCGAATATATTTATCAATCAATAATTCCTGT
TTGCAGGAATTTGCAACTTTTTTGAAAGTTGAAAGTGAACTTTAAAAATT
TAATGCCGGGAAACAAAAGTAAGTTAAATTGGTGCAATAAAGTAGTGTCG
ATAAAACCATTTAACCCAGGACATTTTATAATACTTTTCGCCACTGGCCA
ATAATACCAGACAGTTGGATGCGTCGCCAGGCTAGAAATGGTGCACAGTA
CACCGAATATATTCGNTCGGAGATTTTCAAAAATTATTGATAATTCCGGT
TTTTCCCGATCGGGCTACGTTTTCTATCAAATTACTGATAAATAAAAAAA
AAGGCATAGTTAAATGCTGAAATAGAGTTAAAGCTTGAAATAAGTATATA
TAATTTGTAGAATCATGGTAAAATTTTACTGATAAGTTAATCTAACACAA
AAACAGAAAATTATCAAGAAAATCAAAGGAAGCCCGATAGCAATCCGATA
TTTTAAATCAAAACACAGGCTTTTGGCTCGTAGACGTGTTCCACAGCACA
AGAAAAAAAAAATTAAAATGGCGACCGAAGAACGAAATATCGAAAACATT
GACCTTGCTGAAGAATCAAAGGATATCAATGGTGTCCCTACAGATCCATT
GACAGAAGAAAGGAGAGAAGAAATTATTGTTGAAGTAACTAAGGTGAAAA
TTTCGAATATATTTATCAATCAATAATTCCTGTTTGCAGGAATTTGCAAC
TTTTTTGAAAGTTGAAAGTGAACTTTAAAAATTTAATGCCGGGAAACAAA
AGTAAGTTAAATTGGTGCAATAAAGTAGTGTCGATAAAACCATTTAACCC
AGGACATTTTATAATACTTTTCGCCACTGGCCAATAATACCAGACAGTTG
GATGCGTCGCCAGGCTAGAAATGGTGCACAGTACACCGAATATATTCGNA
GTAGTGTCGATAAAACCATTTAACCCAGGACATTTTATAATACTTTTCGC
CACTGGCCAATAATACCAGACAGTTGGATGCGTCGCCAGGCTAGAAATGG
TATGGTGGCACAGTACACACACCGAATATATTCGGAGTGAGGCAGTAATT
ACTTTTGGCATATTGACATCATGACGCCAGGTTTAAGCCTCTCCCTCAAC
CGCCATATAAGGACGTAGAGTGTAAATATAATTATTTGAGCAACTTTTAG
GGGCGAGAAAATCAAATATTCTTGTGCCAAACCCTGGACCAGTTTAGGGG
TTTTACAGCGCCCCACCCCCCCCCCCNGACCACCATATAAGGACGTAGAG
TGTAAATATAATTATTTGAGCAACTTTTTTTAGGGGCGAGAAAATCAAAT
ATCCTAGGGCCAAGCCCTGGACCCGTTTAGGGGTTTTACAGCGCCCCACC
CCCCCCTTTCATTTTGATTATCAACCACTAACAGTCTTTTCCCGTTACGA
GTTACTTTGAATATGGATGCCGCCCCTAAAACTGGTAAAATTAGCAAATT
TTAGCTATTTTTGTAATTCTTTTAATTTTTTGGATGACTTTACTGAAAAA
GTCTGACAATTTTTATAATTTGAAAAAAATTTCTGTTGGAAAGTTGTTTG
TTGCAAACAAAAAATTCTTGAAATTTTTTTTCAATATAAAAAAGACTTTA
ATTCTAAGGGCAAAACATTAATTTTTGCACTAAGTGAATTAAATGTGTCA
CAGAAATAATCATTTTTTAGCTTTTTTTGTAAAATAAGTCCAAAAAGCAA
CCAAAAATAGGTGGTCTCCATGACAAATTGTCCCAAAAATTTTTACTACT
AGGGTAGTAAAATACCTCTTCCAAGAGTCTGGGTGGGATGTAAAAATTCG
TAAAAATCCTTTTACCGCTGTCTGAGATTTTACTACCGACCCCCCCTGCC
CCCAGCGGTTTGCGTAAATGCGTGAAAATTAAAAAAAAATTGCGTGAATG
CGTGAATTGGAAAGCTTTGCGTGAAAAAAAATTGCGTGAAATGTTGAAAA
ACATTGTGTGAATGCGTGAATTTGGGAAAAAAAATTGCATGATTGTGTGA
AGTGAAGGTTGACTGGAGGGCCTCCCTGACCGACACACCTTGTCTAATCT
CCTCATACAGTAGCAACTATCTGGTCTACAAATTAGTTAAAGTGATTGTT
TTTTCAAACAGCTTACTCAGCAGCTTTTTTCAATAAACATTTACCGCCAA
TGGGCTCTAACTTGGGACTATCTGACAAAACATGGGACAGCAATTCGGCC
ACCATTTCACCAAACCTCCAAAGTCATTTAATTAACATAACCATGAATCA
TAGATAGCAAATGATGTGAATACGCTACTCTCATCAGGCTTTTACACCAC
AAAAGGAACAAATCTTTGCAACGAGAAACGCATAAATGCGATTGCGTGCA
TTCGCACAAGCGTCCAAACACAGATATAAAAAAGTCCGTTCCACAGTGGA
AAATTGTGAGATCTACTGTTATCAAGACTCTGTAACTTTGACATGCCAAT
CAATTGCGCACACTGGAAAAAAGTCTATAGAGAAAAACAACAAAAAACAA
ANTAACTTTGACATGCCAATCAATTGCGCACACTGGAAAAAAGTCTATAG
AGGAAAACAACAAAAAACAAAAACAAGAATTAGCGTCAAGATGTGAACAA
TGTGTGTGTGATTAAATTGTTAAATTTACTTCTTCAAATTATATAATTTT
AAAATGCTTTAAAGATACATTTGGTTGTGATTATGGGGTGGTGAAAGTTT
GATTGATAAACTTGATTGAAGTATCAGAACTAACTTGTTTTCAAAGAGAT
TTTCAAAACTTATCTAAAAACAAGATCTAAATTCAAGAGAACAGATCGCA
TAATTGCAAGAGACAAGGTATGTTGGTATTACACCTACCTGGGCTTTGAA
GCATGATTTACATGAGAATAATAATATAAAGCTGAACAGGTTGGCAGTGC
CAATCTTAAAGCCAATCTAAAATGGTCAAAAACCAATCTTATTTTGACCG
GCATGATTTAAATTGTACTTCGCCTAACTACTGTACTTAGATGGACATAA
CTTCATTTGTCATCATTTCATATTTTAGTTAGAAGATGAAATCAAGACGT
TGAGACAAGCACTTTTACGTAAAGAAACACAACTCAATAACTTAAGAACA
GAGCTAGGTGAAACAAGATGGGCAAGACTTCAAAACTCTCAGGCGTAAGA
AATGAACAAGTTGATATTTTTCCCTCTAAGAAATGTGCTAAAATATTGCA
CAAATAAGATTTTTTCAACTTTCAACTTATCCATCTGCAGACATATGGGT
TTAGTAAACCAACCATTAGAATCCAGCCCAGTGAGGCTTGAGTAGAGATT
TTTTATAGTCTCTGATTTAAAATTTCATTTTTCATTTTTCAGCGTACAAA
AATCAAAGCAAGCAATTTCAGATGCTGGAAACAAAACATCACAGGCATTG
AAAAATGTTGGAAATATAACTGCTAGCAAATGGCAAGAAATTAAGTAAGA
TTAATTTAACTCAGTACTTGATATACCCAACCCATTTGAAATTGTATTGT
TGAACCTCAAAAGGCATATTTTGATTGTAACTAGGTCAAGAGCCTAACTC
ACTTCTGTTACCTTTGATAGCTGATGTTTTGAATGACGATTCAATGATAA
TCTTAGATCTGTTTAGTGAGGTTTTTACTTTTCTGATGTTAATGGTTTTT
TTTATTTAATTCAGAGAATCACAACGCTACCAAAATGTATCTGAACGATT
TTGGAGTACAACTGGGGCAGTTAAGGTATGAATTCTATTACTATGCAATC
AAATAATCATTGAAAATTCTTTCTTGTGGTAGGTTTTTCATGAGAATTGA
ATATTTTAGAAACTAACAAAGTCATCTTAAAACAACATTCCATGCTTAAA
AGGCTATATTAAAAGACAAAAAACCTCTTAAACTTTATTATGCCTTTATT
TATTTTTGTTTAGATGAAATTTTTCGGAATGCCTTTAAGACAATCGATAA
CGGGAGTGCCAGCTGGAAGTAGCAGTTTATAACCAATGAGTCAATTGACA
TTAAAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009178XLOC_009178Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016440-exon-sc0000237-1575043694:397429..398038TCONS_00016440-exon-sc0000237-1575043694:397429..398038Clytia hemisphaericaexon
TCONS_00016440-exon-sc0000237-1575043694:394245..394360TCONS_00016440-exon-sc0000237-1575043694:394245..394360Clytia hemisphaericaexon
TCONS_00016440-exon-sc0000237-1575043694:393945..394046TCONS_00016440-exon-sc0000237-1575043694:393945..394046Clytia hemisphaericaexon
TCONS_00016440-exon-sc0000237-1575043694:393664..393724TCONS_00016440-exon-sc0000237-1575043694:393664..393724Clytia hemisphaericaexon
TCONS_00016440-exon-sc0000237-1575043694:393380..393475TCONS_00016440-exon-sc0000237-1575043694:393380..393475Clytia hemisphaericaexon
TCONS_00016440-exon-sc0000237-1510915933:397429..398038TCONS_00016440-exon-sc0000237-1510915933:397429..398038Clytia hemisphaericaexon
TCONS_00016440-exon-sc0000237-1510915933:394245..394360TCONS_00016440-exon-sc0000237-1510915933:394245..394360Clytia hemisphaericaexon
TCONS_00016440-exon-sc0000237-1510915933:393945..394046TCONS_00016440-exon-sc0000237-1510915933:393945..394046Clytia hemisphaericaexon
TCONS_00016440-exon-sc0000237-1510915933:393664..393724TCONS_00016440-exon-sc0000237-1510915933:393664..393724Clytia hemisphaericaexon
TCONS_00016440-exon-sc0000237-1510915933:393380..393475TCONS_00016440-exon-sc0000237-1510915933:393380..393475Clytia hemisphaericaexon
TCONS_00016440-exon-sc0000237-1491911889:397429..398038TCONS_00016440-exon-sc0000237-1491911889:397429..398038Clytia hemisphaericaexon
TCONS_00016440-exon-sc0000237-1491911889:394245..394360TCONS_00016440-exon-sc0000237-1491911889:394245..394360Clytia hemisphaericaexon
TCONS_00016440-exon-sc0000237-1491911889:393945..394046TCONS_00016440-exon-sc0000237-1491911889:393945..394046Clytia hemisphaericaexon
TCONS_00016440-exon-sc0000237-1491911889:393664..393724TCONS_00016440-exon-sc0000237-1491911889:393664..393724Clytia hemisphaericaexon
TCONS_00016440-exon-sc0000237-1491911889:393380..393475TCONS_00016440-exon-sc0000237-1491911889:393380..393475Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000237supercontigsc0000237:393380..398038 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.1693	13.6626	38.6219	28.9329	11.3844	5.18544	1.15859	1.39303	0.453229	0	0	0	0	0	0	0	0	0	0	0	13.6842	17.1196	4.34742	1.15335e-09	0.676305	0	0	0	5.37583	0.398113
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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