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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016425 ID=TCONS_00016425|Name=TCONS_00016425|organism=Clytia hemisphaerica|type=transcript|length=2193bpRun BLAST on NCBI protein sequence of TCONS_00016425-protein >TCONS_00016425-protein ID=TCONS_00016425-protein|Name=TCONS_00016425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=441bp MKVKVIARNPDNYVRGSNQEIDRVPRNLDPDLHPFEAAREYTKAMNAVKLRun BLAST on NCBI transcript from alignment at sc0000237:376408..388846+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016425 ID=TCONS_00016425|Name=TCONS_00016425|organism=Clytia hemisphaerica|type=transcript|length=12439bp|location=Sequence derived from alignment at sc0000237:376408..388846+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000237:376408..388846+ >TCONS_00016425 ID=TCONS_00016425|Name=TCONS_00016425|organism=Clytia hemisphaerica|type=CDS|length=15912bp|location=Sequence derived from alignment at sc0000237:376408..388846+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016425 vs. Swiss-Prot (Human)
Match: DCA13 (DDB1- and CUL4-associated factor 13 OS=Homo sapiens GN=DCAF13 PE=1 SV=2) HSP 1 Score: 544.658 bits (1402), Expect = 0.000e+0 Identity = 243/435 (55.86%), Postives = 322/435 (74.02%), Query Frame = 2
Query: 215 MKVKVIARNPDNYVRGSNQEIDRVPRNLDPDLHPFEAAREYTKAMNAVKLERVFAKPFLKSLDGHTDGVFCLRRSLTSLSTIASGSCDGEIKLWNLQTSNCFKTYNAHNGFVRCLTFNRQGTFLYSVGDDKVVKQWDLEE----ESSEAKTTYLHSNTMIGVDHHWSKQQFATCGDKVDIWDISRATPIQTYDWGIDTVESIKYNPVETHIVSATASDRSIILYDTRGSNPLRKVTMKMKSNAVAWNPIEAYTFSAANEDSNVYTFDMRRLDTPCNVHIDHVGAVLSVDYSPTGQEFVTGSFDKTIRIFPRDRSKSREIYHTSRMQRVFCVAFSGDAKFVLSGSDETNIRLWKANASERLGASNPRQRRAMKYNQKLKDQYQHHPEVKKIMKHRHLPKLVYKIAKEKKVMLDSLKRKEENVQLHTKAGSVPKVAE 1507
MKVK+++RNPDNYVR + ++ RVPRN DP LHPFE REY +A+NA KLERVFAKPFL SLDGH DGV CL + L+T+ SG+CDGE+++WNL NC +T AH GFVR + GT ++VGDDK VKQW ++ + E T L G+DHHW + FATCG +VDIWD R PI + WG D++ S+K+NP+ET ++ + ASDR+I+LYD R + PL+KV + M++N + WNP+EA+ F+AANED N+YTFDMR LDTP VH+DHV AVL VDYSPTG+EFV+ SFDK+IRIFP D+S+SRE+YHT RMQ V CV ++ D+K+++ GSDE NIRLWKANASE+LG R++ A YNQKLK+++QH+P +K+I +HRHLPK +Y +E+++M ++ +RKE N H+K GSVP V+E
Sbjct: 1 MKVKMLSRNPDNYVRETKLDLQRVPRNYDPALHPFEVPREYIRALNATKLERVFAKPFLASLDGHRDGVNCLAKHPEKLATVLSGACDGEVRIWNLTQRNCIRTIQAHEGFVRGICTRFCGTSFFTVGDDKTVKQWKMDGPGYGDEEEPLHTILGKTVYTGIDHHWKEAVFATCGQQVDIWDEQRTNPICSMTWGFDSISSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKKVILDMRTNTICWNPMEAFIFTAANEDYNLYTFDMRALDTPVMVHMDHVSAVLDVDYSPTGKEFVSASFDKSIRIFPVDKSRSREVYHTKRMQHVICVKWTSDSKYIMCGSDEMNIRLWKANASEKLGVLTSREKAAKDYNQKLKEKFQHYPHIKRIARHRHLPKSIYSQIQEQRIMKEARRRKEVNRIKHSKPGSVPLVSE 435 The following BLAST results are available for this feature:
BLAST of TCONS_00016425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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