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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016417 ID=TCONS_00016417|Name=TCONS_00016417|organism=Clytia hemisphaerica|type=transcript|length=1331bp
GTGCGAACGACAGACCAAACGACTGACACTGCTTGCTTGACAGCTTGACT
GCCCTCTGGACCTCCTTGGACTACCTCCACCACTATTCAGCCAGGGCTAT
AACATGCTCTGACACAGCATCAAAACCCACAAAGATTAATCACTTTTAAA
TAACAAGAATGACAACTTTACGCCAATTCAAATGTGAAGATCTCTTCAAA
TTTAATAAAGTCAACCTTGACCCCCTAACAGAAATGTATggactttcatt
ttatttatcgTATTTGGCTCACTGGCCTGAATACTTTCAAGTTGCAGAAT
CACCCAGCGGTCAAGTGATGGGCTACATCATGGGAAAAGCAGAAGGACAC
GTGCAGAATGAACAATGGCACGGACATGTTACGTGTTTGACCATTGATCC
AGAGTATCGCCGACTTGGCTTAGCAAGAAATCTCATGAAGGGTTTAGAAG
ACATTTCTGAAGATAAGAATTGCTTTTTCGTTGATTTATTTGTACGTGTA
TCAAATGAGGTAGCTGTCAATATGTATAAACAACTTGGTTATGTTATCTA
TCGGACAGTTCTGGAATATTATTCAGGAGATCCTGATGAGGATGCCTATG
ATATGAGGAAAGCACTGACACGAGATGTGGATAACAAATCGGTTATTCCC
TTGAAGCATCCTGTTAGGCCGGAAGATGTTGATTAGATTGGTTCCTTATC
ATGACAggctttttgaaagctttttctTATAAGTTGAATATTTATGGAAC
GAATGAAGAATCAATGAAATAACTGGTACTGAGATTTAAACTTGTCTCCA
AAGTTCATATTGTAGAATTTCAACTATTCAACTTCCCCCTTTTTCTAATA
Acataaagataaaaatcgaaattttaagatgaatattatgttttttaatt
aattttagaaTATTTGGCCAGCCTTATTTCTAATAAATTACAAAGTAANA
ATATTatgttttttaattaattttagaaTATTTGGCCAGCCTTAGTTCTA
ATAAATTACAAAGTAAATTCTCTTTGTAAATTTCAATTAGTACGataata
aaatgaaactttATCTTCCTTTTCTTTCCAACGTTTTTAAAGGCTTTTAG
TAATCATATATTCTTTTAGTATATTTATATATCGAAGATATAGAATCTTG
TGACGTTTGAAGTTTCGAATTTTAGGgttgatgaagatgaagataaaCTC
TCTTTACTTGGGGGTAAGGGCCATACTTATAAAGAATGAATAAAGAAGGA
AGAACTGTTTCTTCTCAGTTCTTGCTGTGTTCGACTGTTTTGGCTCTAAA
TGGtgttcaaaataaaagaattatATTTCTC Run BLAST on NCBI transcript from alignment at sc0000237:318101..326864+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016417 ID=TCONS_00016417|Name=TCONS_00016417|organism=Clytia hemisphaerica|type=transcript|length=8764bp|location=Sequence derived from alignment at sc0000237:318101..326864+ (Clytia hemisphaerica)
GTGCGAACGACAGACCAAACGACTGACACTGCTTGCTTGACAGCTTGACT
GCCCTCTGGACCTCCTTGGACTACCTCCACCACTATTCAGCCAGGGCTAT
AACATGCTCTGACACAGCATCAAAACCCACAAAGGTAATTCCTTTGCATT
AGATGGCTATTGTTCCCTCCATAAAAAGGCAGGATTCAATATGACGGCCC
ATAGAACTACAGTTACACGCAGTGTTacacgtcatatcttcctttcacaa
gtgtttcaaccggtattccaacgaagccatattttggtttgtacagaaat
ttcgcccgctcaaatctaaacaacaaaatggtcaatctcactaaaNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggcttggccgccattt
tgaattttgattttttttctcctgtactcggcaatttagaggttgttcgt
aatacgcgatttggcttacgcgtaacacttgtgctTTGGGTTGGCAAAca
atatcatccaccaggatccagcctctcttattttccccctattttctact
ttcctatcttctatcctgattttctgactttctctagtgtttctgaaatt
tgattgtaCCGGTGAAATTGGTCTCCGatcccggctcgaaccaccaaatg
caagcaaccttggtttacaaacccaatgcctaaccgcttgcgccaacgag
acacggcagaaggttgtcattcacaaatacttataacgtgtaatttacag
acctttattaagaaagctcccaaccctaccggtacccctacaaggatccc
tacgggatcctaagttagGTCCACAGGGTACGTATGCCCTcaagaaggcc
ttcggccttatattgtgactctcgagctccaaccctaaccctaactgata
ataaacgaacccccgtctaggtcacgtccgcagattgaaaaatttcaatt
gcatcctggtggatgatatcgtctgccaaccctTCCTTTgacacgaccct
cgacatggcccaagaattctcgggcctcttcgggccatgttcgggccgtg
aggccctatcaattcttttggcccgaacatgacccgagtcattcgggcca
tgttcaggccatgttaaatgttaaattgattcagcatgtccagtcaaata
AAATAGTACataataagatttgtctgttttgtttatatcgctcaaaaaac
tttacgagcttcccatGGACatgcttcagtttaaaaccaggaccagttta
ctagcaaatattaccctaagtatatttataactatgttttcataccaaat
aagacatttaatatttatatgaatttacaacatttatatatttaatataa
ttaagagaaaccaagtttttctcaaagaaagtaTGGCCCGAACatttatg
ttaaaaaaattcagtcttgaaattacacgcctgtttaaatcatgttttca
aaaatttctcggGCCATGTTGAGGGTCGTCCTTTGACGCCtttgtttcga
gcgtaaaactcctactgttcaggatatgagcactgctcttgttttgaata
ttgaaattctcccgATAAATCAAATGCCCCTTTAGTACTAAGGGGCCATC
AACTttcgattttcgaattttttaacgacATTTGACCgttaaggggggag
ggggtcgaccatgtgccgttaagggaaggtcgaaaatcttgttaggggtc
aactcaccacatatcaattcttttcaccagataatatcgatttttgagac
gtttattccatacaaatgttactttccatatttcttttcctccttttatc
aACTAAGATCTGCTAAAGTCACATACCTAAAGTATTCACTTCGCtgtttt
ttagaataattttaaccaaaacaaacgacccGATGTTTAGCTATGCGGCC
CTTGAATTTTGCAGACGGTtggtcttttttctttgaaatgccgCTATTCT
TCTGATTATGATTATGGAGATAATTTTAATTTGCGcaacttttggaaaaa
agtttagaaattatatctccgttaccgtaagttggtctaatctcgacatc
cgtcttctaatttcgacacccttctttagagataggaatgaTATGAAAGT
CGGAAtcggtgattgaaaaaagatttatcctcccttaccactaagcaaat
aaaataatttcgaccttttcttaatttttcagctctagaaaagggtgtcg
aatttagaggagagatgtcgaaattagaccaagttacagtatatttttaa
aatgtaaactgagcaAAGCCGTAgtgaaattaaagatggctgacaaaACA
ACGATGAAattgaaggagaaaatttagagtttcatcgatttttgacaatt
ttttaactttagagaaTTTGATGGCCGTTAAGGTCGAGGGGGGGGAGGGG
TCAGAGCCTTAggggtcttcgacaaaaaactttcgaattttttatcggca
ttgggccgataagctCCAGACCCCATcccccttgctcttatcggccaaaa
tttttgaagccaatTTTTACATCTTCGAAAACACAAATCTTTCCAATCAT
GTCCGCCATCGCGTTGATCTCGCCTTCCCACCCGTCTTCGTTGAGTTTTG
TCTATttgcaccaacattgagtttgttaattttttttttctatttctatt
tggttgagttgcaggaggctttgaggcctattttcgcaactatagacgct
ttcaatgagcgccccgtcagcaccttggactgactacccaattcccctca
catgaagagtttttttatcaaagctaatTCAAAATTGTACTTTTAAAGTT
GCAAATTTGTGCGCGAAGGTGAAAGCAAATGAAATTGtatgctttcagtg
gagtttgtggacAAAATCAGCAAAGTAAGTacagtataagcacactgtgc
ttttaattggctgaaatcttttttcgcgttggaaaaactttttcaaacta
aactttcagcaatgattgacacCAAACTGTTACagtgaaaattatccagc
gcatttttttatcttcttaccttttTCATCTCCATTGAAGCACTACTCAA
GGTTTACTGAAATTAAGCACCtaatatattcttataattactgatattca
ctgaaacaccATTCGTTGTGCGGCTGCGGTGGAGAGCATGACGTAACTct
cgcggcaactaactcgtcttctgttggaagatcatattatTGGCCGTTTT
GACGTTACCACCCCCAAAGCAGCGAGTGCCTCTGTCTTTCTGCATTTCTT
TCCACTATTTTAGTTGGCCTTAACAataatagatccaaaagggtaatctt
ggaagataatttgtttttggCCCTGGCTTTGGGAAATACCGTGAGTgatc
ctaaatccgacagccctgcctaattccgacccctcaatattgaaacaaat
atatgaagggtgggattttacagctgcCCGTAGAATCTAGCACCCAGGTa
acccctaacatggttagtctCCCCTAGCAACATgctaaaatcaggtacca
attgctgctcgaccttttagccccccccctcaggccaggggggttccagc
catgtaaaataaggtttttgtgataatttgcccaaattacaccaaaatTA
GGGAAAATCTCAGAAAACCTCTATATTAACATTAGAAATGATAAGAGATT
GTTAAAATCACTCCAGGGGGTTAAATggcccaaatatggctaatttgttG
TCCAGACAAAAAGATTGTTAACTAAAAAGAGCCATTTAAGCTTAGTCTAT
ACCAAACCTAGTTCAAACTAAAGCTGAATGGTTGTTTTAACTCCTAATAG
TAAAATGGCTCACTTTTTATGTTCTTTGGTCCCAAAATAGGACAATTTGT
TGTCCTTTTTGGGACCGAATAACCAAAATTTGCTACCTGAAAATTAATTG
TGAACCATTCATACagttttgtgcaaaattttagcttaaaTAAGCTGATA
GCTTTGGCACTATTTTGGAAAAGATAGAAATGGTTGAATCCCTAGTGTTA
GGTTAATTAAAATACATTTGCCTTTAGGACAACATATTGTCCACGAGAGG
GGCCGTTCAAcgattttaatttcaattatcTTATGTTTGAGGTATTTTGA
GCCTGATCTGTAAGAATcttgaatgaatttttgttttaaagttgatTTTC
ATGACAATTAATTGCCCATACTTTACAACATTTAGGACAATTTATTGTCC
AtttttggacctttttacaagattttatAATTGGAATCTTGTTGTAGGAT
AATGTTCTTCATGTGTaccaaattttgacttgatTGGAGCACCCTATCAA
GACTTATTGATCTTGGATAACTCATTATCCTTTCAGTTAGGACAATTCAT
TGTCCTTTTTAGGACCGCAGTTCAAAAGCTTATATCTCTTTAAGTATACC
TTTCACAGTCACGGGACCAGCATGGATCCGAAGATGGACCTTTTAACTTA
ACCACGGGTATCAATGTTGGGCCTAGAAGACATTTATGAGtctgtaattt
tcaaaattaggaAGGGGTGTAAAGATGgtgcaaaaacagccatttttgtA
CCTTCTTTTTGACAGTGACCATTGGAAAATTTCCCAGTTGATAGAGACTG
CCTGCTCTTAGTTCCAGTGTGTAGATTAAAGGCTGATACTGAAGAGATGA
AGAATTAAAAGTAAGCTTCTCAGCAGGGAGAAAGCTATGTATACGCACAT
TTTATCCAATCTGTGATGCCATAAACCATTACTTTCGGCATCCAgttaaa
aaataagtttgagAACAAGATGGctgttattgaattttttttctctattt
gtCAAACAAAAAGTGCTCATAATCTCCTTATACTTTTAGAGGAAAAGAGA
TATGTTTTCGTAAATGTTTTTATGAGTGTATTATTATGAATAGAACTCAA
AAAATAACTGGAGGATCCCTTTTAATTTAATTATGTAGCGAAAAAAGATG
AGTTTTAGCTTTTAGCTTTGAACGTGACNTAATTATGTAGCGAAAAAAGA
TGAGTTTTAGCTTTTAGCTTTGGCTTTGAACGTGACCAATGACTTAGTTT
GGCGAAGATCAACAGGCAAATCATTCCATATATTCGTAGCATTGTGGAGA
AAGGTATTTGTATCAAATTTGATCAAagtaagataagataagattaGATA
AGTAAGGAGGGCATATTTTTTGAATAGCCTTGAAGGTCATGAGAGCATTA
CTATAATTGGCAACTTTATTGAAAGGTTTATTCATAGGGGTGAAATGATC
AATCTGCCTAGACAATGACTCAAATTGCCTACAAATTGAGCAATGTTGCC
CTGTGTTAACACAGTAAGTATGTTAAATGTGGATAAACCAACGCATTGAT
CAACAATCGCTTTGTATTGTCGTTCAAGGTTGAACCTACCCTTTTGATCT
TATTATATCCATTTCATAGTTCAAACTCCCCCTTTTGGGGATCCCCTTTC
TGCATtatgtttttcatttattaaGTATCCCCCTCCAACACTTGATATac
ctaatacaccttttcgaccttaGTCGCGCGGTCAGAAGCGTGCCAcctaa
ttatttaattatccccctaaactcaatccaatccttttttgacacacttt
tcaattgtctataggtgtgaaaaaaggactgggacggttttaaaGCAGAC
AAGAAAATGTCTGTTTGGCAATTGTCagctacagtcgaaaaggtgtattg
ttcaGTCttagaataaaatttatttattaaataGACAGCCAGTTATCATC
AGTCATAATCAGttagtaaataaagaaaaaaatttattttctcaatGTGA
TACTTTTTTGATCAGTAGAGTGCTTAACCAACCAGAATTAGAAGCATGAT
ATGATAGTTGAAGCAGTGAAATTATATCTTCAATACTGACAGTTTCATCG
TGTTTTATGCAAACAATTTTCAGATGAAATCCTGGATTTACTATCAGTTC
TGAAGCTGATAGATAAGGTTGTAGGGTAGTAGTACTACCTACGGAACCAA
TAACTTTGTATGCATTatccaaaaagtttttattattGACTGGACACATG
GTTAGATACAAGTCCTTATGGTACACCAAGTTTATAAATTTCACAATCCT
GCCAGCTAATATGGCATTGATCCATTTAGGACAGTtcctttttcatcatt
ttagtTATCGAGTTAAATTATTCAGctaaaaattgcctaaaattgaCAAA
GCTCTATTATTGTTGCTGACTCTCAAATAATGACTATGCAGGACTATCAG
GCCTGGCCTTGAATGGCGCGCACACGCTAGCACACACGTAAAATTATTTG
CCTAAATCAAGCAAAAACAGGTATTGAAAGTCTAAATTTAAGGCTTGCAA
GTGCTATAATGGCACACGCAGACTTTTCTTCATTTCATGGCCAGGCCTGA
CTATGTCTTACTcttcattttaataattttgatgagattCTTTGTTAAGA
TAATCTGTTTTTCATTGTGAAAATTTTACCAGCCATTGTatatacttttt
ttaatttgatattaTAGATTAATCACTTTTAAATAACAAGAATGACAACT
TTACGCCAATTCAAATGTGAAGATCTCTTCAAATTTAATAAAGTCAACCT
TGACCCCCTAACAGAAATGTATggactttcattttatttatcgTATTTGG
CTCACTGGCCTGAATACTTTCAAGTTGCAGAATCACCCAGCGGTCAAGTG
ATGGGCTACATCATGGGAAAAGCAGAAGGACACGTGCAGAATGAACAATG
GCACGGACATGTTACGTGTTTGACCATTGATCCAGAGTATCGCCGACTTG
GCTTAGCAAGAAATCTCATGAAGGGTTTAGAAGACATTTCTGAAGATAAG
AATTGCTTTTTCGTTGATTTATTTGTACGTGTATCAAATGAGGTAGCTGT
CAATATGTATAAACAACTTGGTTATGTTATCTATCGGACAGTTCTGGAAT
ATTATTCAGGAGATCCTGATGAGGATGCCTATGATATGAGGAAAGCACTG
ACACGAGATGTGGATAACAAATCGGTTATTCCCTTGAAGCATCCTGTTAG
GCCGGAAGATGTTGATTAGATTGGTTCCTTATCATGACAggctttttgaa
agctttttctTATAAGTTGAATATTTATGGAACGAATGAAGAATCAATGA
AATAACTGGTACTGAGATTTAAACTTGTCTCCAAAGTTCATATTGTAGAA
TTTCAACTATTCAACTTCCCCCTTTTTCTAATAAcataaagataaaaatc
gaaattttaagatgaatattatgttttttaattaattttagaaTATTTGG
CCAGCCTTATTTCTAATAAATTACAAAGTAANAATATTatgttttttaat
taattttagaaTATTTGGCCAGCCTTAGTTCTAATAAATTACAAAGTAAA
TTCTCTTTGTAAATTTCAATTAGTACGataataaaatgaaactttATCTT
CCTTTTCTTTCCAACGTTTTTAAAGGCTTTTAGTAATCATATATTCTTTT
AGTATATTTATATATCGAAGATATAGAATCTTGTGACGTTTGAAGTTTCG
AATTTTAGGgttgatgaagatgaagataaaCTCTCTTTACTTGGGGGTAA
GGGCCATACTTATAAAGAATGAATAAAGAAGGAAGAACTGTTTCTTCTCA
GTTCTTGCTGTGTTCGACTGTTTTGGCTCTAAATGGtgttcaaaataaaa
gaattatATTTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016417-exon-sc0000237-1491911889:318101..318234 | TCONS_00016417-exon-sc0000237-1491911889:318101..318234 | Clytia hemisphaerica | exon |
| TCONS_00016417-exon-sc0000237-1510915933:318101..318234 | TCONS_00016417-exon-sc0000237-1510915933:318101..318234 | Clytia hemisphaerica | exon |
| TCONS_00016417-exon-sc0000237-1575043694:318101..318234 | TCONS_00016417-exon-sc0000237-1575043694:318101..318234 | Clytia hemisphaerica | exon |
| TCONS_00016417-exon-sc0000237-1491911889:325668..326864 | TCONS_00016417-exon-sc0000237-1491911889:325668..326864 | Clytia hemisphaerica | exon |
| TCONS_00016417-exon-sc0000237-1510915933:325668..326864 | TCONS_00016417-exon-sc0000237-1510915933:325668..326864 | Clytia hemisphaerica | exon |
| TCONS_00016417-exon-sc0000237-1575043694:325668..326864 | TCONS_00016417-exon-sc0000237-1575043694:325668..326864 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000237 | supercontig | sc0000237:318101..326864 + |
Blast
BLAST of TCONS_00016417 vs. Swiss-Prot (Human)
Match: NAA20 (N-alpha-acetyltransferase 20 OS=Homo sapiens GN=NAA20 PE=1 SV=1) HSP 1 Score: 285.034 bits (728), Expect = 4.693e-94 Identity = 130/178 (73.03%), Postives = 152/178 (85.39%), Query Frame = 3
Query: 159 MTTLRQFKCEDLFKFNKVNLDPLTEMYGLSFYLSYLAHWPEYFQVAESPSGQVMGYIMGKAEGHVQNEQWHGHVTCLTIDPEYRRLGLARNLMKGLEDISEDKNCFFVDLFVRVSNEVAVNMYKQLGYVIYRTVLEYYS---GDPDEDAYDMRKALTRDVDNKSVIPLKHPVRPEDVD 683
MTTLR F C+DLF+FN +NLDPLTE YG+ FYL YLAHWPEYF VAE+P G++MGYIMGKAEG V E+WHGHVT L++ PE+RRLGLA LM+ LE+ISE K FFVDLFVRVSN+VAVNMYKQLGY +YRTV+EYYS G+PDEDAYDMRKAL+RD + KS+IPL HPVRPED++
Sbjct: 1 MTTLRAFTCDDLFRFNNINLDPLTETYGIPFYLQYLAHWPEYFIVAEAPGGELMGYIMGKAEGSVAREEWHGHVTALSVAPEFRRLGLAAKLMELLEEISERKGGFFVDLFVRVSNQVAVNMYKQLGYSVYRTVIEYYSASNGEPDEDAYDMRKALSRDTEKKSIIPLPHPVRPEDIE 178
The following BLAST results are available for this feature:
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