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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016411 ID=TCONS_00016411|Name=TCONS_00016411|organism=Clytia hemisphaerica|type=transcript|length=1290bp
agaaaaatataaaagaaagaaaaactgtAGAAAATAAACAGACAAACAGA
TTATCCATGGTTTTTTGAATGACTGAAACctttcatcaaaaacatcaaat
caagaGTGAAGAGCCTGAATCTGCAACTCCTGAACAAGTATCCAGTCTAA
ATGGATCAATTTATTGCCAAGAGTCCAGCCTAGATGGAACCATTTACTCC
AATAGAAACTCTTCTGAGTCTAGCTTTGGCAATGCAACCCAAAATGAAGA
TTCAACACTTCAATTCACCCGCAAACCTGGTAATATCAAAGTTGAGCAAG
ATGTTGATCTATTTGACTCTTCATCAAATTCTTACTTGATAACTCAAGCT
AATGTAAACGAGACTTTAAACCACAGCTTTGATTCTTTTAATATCTCATC
GAATTCAAATCGAAATGCAAATATCTTTTCACAAGGCGTTGTGGAGTGTC
CTAATGTTAATGAAACTCATCATAGTAAAACCATCAACTTGGCTTCTATT
TTTTCTGAGCCCTCGTTTCAAAATGTTGATACTCTAAAACGTAACAAACA
AACTCTTTATGATGGAGATAAAACTCTTGAAACTGAAAAAACAATAAACA
CTTCAACGGAAAATATTGGCGATAAAACCGTTCTTGAAACAAGTACAcca
attctttttcaatctcAACAAACGTCAGACAGTCTAAACACCTTAACCGT
CACCAATGGAGatgaaaacaacaacaatgacgatgatgacgtcattttat
cgGACGATTCGGACAAAGCCGATCCGAATGCTGGTAAACTCTCATGGACA
GTTCCGGCGATTTCCACGTATTGCGTACGTGAAGAGGAAGCGGAAAACTC
GAGAGCGTATAAACGTCATTACGTAACCAGTGCGCAAGTTGTGTCCGTAG
CGCGCGTACGTAAGAAGGTACCGATGAACCGTGGTTTTCATTACGCTGGA
TCGCCGCTATTTCAACAGATTCATGAACAGTTCGGAGAGATCTATCCTAC
TGCTCAAGAGAACCACGCCCTCCCGCTTCAACTACTTCACACGTGTCTTG
TGAGCAAACTGGTCAAAGAATGTTTCTTTCATGCAAAAACAAAGAAGGAA
TTATCAATGGCTTTCCTACCTATCACCAAAATGCCTAATAAACTCTCTGA
AATGATTTGGAAGATTGGTAACGAATTGATGAAATCACCATACGGTAATG
CTGACAAAgactttttccttcaaaagatGAAATTGTTGACTCATTATCCG
CAAGGTGTTAGGATCTACCTGGATGAAGTTGTCAGGTACT Run BLAST on NCBI transcript from alignment at sc0000237:186820..189001+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016411 ID=TCONS_00016411|Name=TCONS_00016411|organism=Clytia hemisphaerica|type=transcript|length=2182bp|location=Sequence derived from alignment at sc0000237:186820..189001+ (Clytia hemisphaerica)
agaaaaatataaaagaaagaaaaactgtAGAAAATAAACAGACAAACAGA
TTATCCATGGTTTTTTGAATGACTGAAACctttcatcaaaaacatcaaat
caagaGTGAAGAGCCTGAATCTGCAACTCCTGAACAAGTATCCAGTCTAA
ATGGATCAATTTATTGCCAAGAGTCCAGCCTAGATGGAACCATTTACTCC
AATAGAAACTCTTCTGAGTCTAGCTTTGGCAATGCAACCCAAAATGAAGA
TTCAACACTTCAATTCACCCGCAAACCTGGTAATATCAAAGTTGAGCAAG
ATGTTGATCTATTTGACTCTTCATCAAATTCTTACTTGATAACTCAAGCT
AATGTAAACGAGACTTTAAACCACAGCTTTGATTCTTTTAATATCTCATC
GAATTCAAATCGAAATGCAAATATCTTTTCACAAGGCGTTGTGGAGTGTC
CTAATGTTAATGAAACTCATCATAGTAAAACCATCAACTTGGCTTCTATT
TTTTCTGAGCCCTCGTTTCAAAATGTTGATACTCTAAAACGTAACAAACA
AACTCTTTATGATGGAGATAAAACTCTTGAAACTGAAAAAACAATAAACA
CTTCAACGGAAAATATTGGCGATAAAACCGTTCTTGAAACAAGTACAcca
attctttttcaatctcAACAAACGTCAGACAGTCTAAACACCTTAACCGT
CACCAATGGAGatgaaaacaacaacaatgacgatgatgacgtcattttat
cgGACGATTCGGACAAAGCCGATCCGAATGCTGGTAAACTCTCATGGACA
GTTCCGGCGATTTCCACGTATTGCGTACGTGAAGAGGAAGCGGAAAACTC
GAGAGCGTATAAACGTCATTACGTAACCAGTGCGCAAGTTGTGTCCGTAG
CGCGCGTACGTAAGAAGGTACCGATGAACCGTGGTTTTCATTACGCTGGA
TCGCCGCTATTTCAACAGATTCATGAACAGTTCGGAGAGATCTATCCTAC
TGGTATGTATATCTATCTCtctttacttttttgtttttagtttcCTCAAA
GCGTCCATACTTTTCGATTACTGGAATGTTCTCTTTGATGATATAGAAAG
GAAATACGTCTTCTTTTGCTGACAAAACAGAATACATTATAGCTGGAAAT
ATTCGCTTACCATCAATAAGTAACGCTTACTTCATTTCAAAATActgcta
tggtaattgattcccagaggagttcaAGAGAACTTTTATGCTATTTATAG
AAGTGATACCTGGAGACTTGAAGaattaatcaccttggtaatggtttaAA
AACGAGGCAGGTTACATTATAGaaataattaatgaaaattaGATTGGTGC
CTtggagactgttcatctaacgtttccagatcatctaaaaagaacgacag
aAATAACTATTAAAATGCGACAAAAAGAAGTGACAaatcctaaccctaac
cctaacaaaGGACGACATATCTATTATAATATTACTATAATAATTTCGAT
TTCAGCTCAAGAGAACCACGCCCTCCCGCTTCAACTACTTCACACGTGTC
TTGTGAGCAAACTGGTCAAAGAATGTTTCTTTCATGCAAAAACAAAGAAG
GAATTATCAATGGCTTTCCTACCTATCACCAAAATGCCTAATAAACTCTC
TGAAATGATTTGGAAGGTGTGTATACCTCGTTTGTTCTTGAACCTGAAAC
GTGAAAATCCGAAAATATACCGTTTTTACCAAACGAAGCTCAAGGAGATT
TGAATCTAGACTACTTCATAATTTGTAATTCCATTTCCATTACTTTCCAT
TACATTTTATTCGGTAAATCGATTTCAGGTTTGTTCTTAGTTTCAACGAA
TCTGATCATCAGCAGTGTGCCTATATACTACTTTATGTTTTTATCGATTG
TGAATTAGATAGTTCTAGTCTTTATTTTATGTCGGACCTCAATTAATTTC
CTGAAGTGTTTTAATAATGTTCctatttgtgttttgttttcatcttctca
cttttcaaagaattataATGAAACTTTTGATGGCATTCTTCACATTTCCC
CATAGATTGGTAACGAATTGATGAAATCACCATACGGTAATGCTGACAAA
gactttttccttcaaaagatGAAATTGTTGACTCATTATCCGCAAGGTGT
TAGGATCTACCTGGATGAAGTTGTCAGGTACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016411-exon-sc0000237-1491911889:186820..187821 | TCONS_00016411-exon-sc0000237-1491911889:186820..187821 | Clytia hemisphaerica | exon |
| TCONS_00016411-exon-sc0000237-1510915933:186820..187821 | TCONS_00016411-exon-sc0000237-1510915933:186820..187821 | Clytia hemisphaerica | exon |
| TCONS_00016411-exon-sc0000237-1575043694:186820..187821 | TCONS_00016411-exon-sc0000237-1575043694:186820..187821 | Clytia hemisphaerica | exon |
| TCONS_00016411-exon-sc0000237-1491911889:188325..188485 | TCONS_00016411-exon-sc0000237-1491911889:188325..188485 | Clytia hemisphaerica | exon |
| TCONS_00016411-exon-sc0000237-1510915933:188325..188485 | TCONS_00016411-exon-sc0000237-1510915933:188325..188485 | Clytia hemisphaerica | exon |
| TCONS_00016411-exon-sc0000237-1575043694:188325..188485 | TCONS_00016411-exon-sc0000237-1575043694:188325..188485 | Clytia hemisphaerica | exon |
| TCONS_00016411-exon-sc0000237-1491911889:188875..189001 | TCONS_00016411-exon-sc0000237-1491911889:188875..189001 | Clytia hemisphaerica | exon |
| TCONS_00016411-exon-sc0000237-1510915933:188875..189001 | TCONS_00016411-exon-sc0000237-1510915933:188875..189001 | Clytia hemisphaerica | exon |
| TCONS_00016411-exon-sc0000237-1575043694:188875..189001 | TCONS_00016411-exon-sc0000237-1575043694:188875..189001 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000237 | supercontig | sc0000237:186820..189001 + |
Blast
The following BLAST results are available for this feature:
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