TCONS_00016407 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016407
Unique NameTCONS_00016407
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016407 ID=TCONS_00016407|Name=TCONS_00016407|organism=Clytia hemisphaerica|type=transcript|length=1740bp
AAAAATTCCGCGAAAGCGCGCACACTCcattttcaagatggcggattcCG
AGGAGGGTGAAAGTGCATTTTATCGCTcaaaatcaagaagaaaaagaacC
CATAGTTATGGTTCAATGACAACTTCATGCGACGAAAATGATGACGATCC
TTCAGAACAGAAAGTTGGTGATATTACCATCACATTTTTCTACAAACCAA
GAACTTTGACAGCCCTAGCACTATGCATAATTGCTATGTTGTATTTTGCT
TTTGTaagaGATGCAGAACACAATCAGCATGATAATTTCTGGCATGGATG
TCTTGGAGCATTGGCTTTATTTCTTGTCATTTGTCTTTTGATTTGCCCAA
ATGGACCTTTCATTCGTCCACATCCTGCAATATGGCGTCTTGTTTTTGGT
ATAAGTGTGGTGTATGCTATGTTCCTTGCATTTCTTCTGTTCCAAAGTTA
TAAAGATTTTCTGACCATTCTTCAATATTTTGATCCAAATCTGAAAGGTG
CTGAGCCTGATACAGAAGTTTACTCAGATGACTGCTCATGGTCCGTGTTT
GTTTCACGATTGGATATCTTTTGTGTGGCTCACTTCCTTGGATTCACTGT
CAAAGCCATTATGTTGAGAAATGCACATTTGCTCTGGCTCATGAGTATCA
CTTGGGAATTTACAGAGATTGCATTTTCTCACTTactggaaaatttcaaa
gaatgtTGGTGGGATTCTCTTATTTTGGACATTTTGTTATGTAATGGTCT
TGGAATACATTTTGGTTTGTTTATCTGTAAAAAGTTGGAAATGAGAACAT
ATTACTGGGAAAGTATCAAaGATCTCCATGGTGCATCAAAGAAATTCAGA
AGAGCTGTCATGCAGTTTACACCAGTCAGCTGGACATCAGTTCAATGGTT
CAATCCTAAAGATGTGAAGTCAAGATTCTTAGCTCTGTGTCTTTTGGTTC
TGATGTGGCAGGTTGCTGAGTTAAACACATTCTTTTTGAAGCATATTTTT
GCCATTCCAACACACCACTGGTTGAATGTGGCACGTATTGTTTTGATTAG
TCTTATCACTATGCCAACCACCagGCAATATTATTTATATTCAACTGATA
CAAGATGTAAAAGGTTGGGAACTCAAGCTTGGGTTTTTGTTTGTATTACT
TGCTTGGAAGCCATTTTATGTATTCGTCATGCTCGAGAACTTTTCTCACA
AACACAATACACATGGGTGGCTGCTTGGGTAGCAGTAGAAAGTTTCGCTT
GCTTCATTCTGGTCTATGTTCTTATCATCTGGCGTGGAAAGAGAAAACTT
ACTGACGGCAAAGTACCATCTAGAGTACCATCACATCTACGTTTCAAAGA
AGTGGACGGTCAAGAAAATACTGATACAGATTCAGAAGACTATGCTGAAG
ATAAGAGAAGCTCATACTCAAGAAAGTCTTTGCGAACACGACGAAGGACA
AAGAAAGAGTGGTAAGCAAAACTGGGTATTGTTAATTGATAGAGATGTTT
TGTATGCTTGTGAAACTTTTTTAAGTAGCGTTGTGGATTGATCTTTACCA
GGAGAAACAAATCAACGACTAGAATATTAAAATtaaagttggtatcgata
ccaattttagTGGTTGTAGTGTAGGTTTTGAGGCATAGTAAGCAGGAGAT
TTATTCTTTGTGACTTTGCCCAATAAAAGGGCTGCTGAGAGTGGCTGGCC
CTAGTTTAATTTCCTAATTAATTTTCCTAGTTTAATTTCC
Run BLAST on NCBI

transcript from alignment at sc0000237:169205..180415+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016407 ID=TCONS_00016407|Name=TCONS_00016407|organism=Clytia hemisphaerica|type=transcript|length=11211bp|location=Sequence derived from alignment at sc0000237:169205..180415+ (Clytia hemisphaerica)
AAAAATTCCGCGAAAGCGCGCACACTCcattttcaagatggcggattcCG
AGGAGGGTGAAAGTGCATTTTATCGCTcaaaatcaagaagaaaaagaacC
CATAGTTATGGTTCAATGACAACTTCATGCGACGAAAATGATGACGATCC
TTCAGAACAGAAAGTTGGTGATATTACCATCACATTTTTCTACAAACCAA
GAACTTTGACAGCCCTAGCACTATGCATAATTGCTATGTTGTATTTTGCT
TTTGTaaggtaaatattttttaatatccaGACGGTCACGTTGTCAATACA
ATAGAACGAATCGAACCCCAAATTAATTGAACACAATCAACGCNTGGGCA
CATTGTCAATACAATAGAACGAATCGAACACCAAATTAATTGAACACAAt
caacgcaatcgaataattgtgattcgattgtcgaacgcaatcaaatcgca
atagacctttttgagTTGCtgtggcagttacatcaaaatgcctcgaaaat
gtcaatatgaaaattgcgtaatcagagaacgtatgtctcacTCATTATag
aaaggccgagacaaactttcaataattggattgtaacatcgagttaagtc
tcttttgttaagtcaccagggggtaaataaaacagaccttgatacattta
tcgttcgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaaagaaattca
tacttttccaacccggcgaatctttaaaaaagaagcgaacaataaaatat
aattaccctttccaaataaacctcttcggtggcgagcgtaagtctactct
gacgtaattgtaaaatttatgtgatgggaggttgacatagtaatgtaatg
taatgttgtttggggaattatgaagttctctttcgattgcatttattcag
gttgattttttatgacttctaatggtactttttctaatgagtttgattac
tctgttctcacacttatgtttttttttttcgcgtccttttccgtgattac
ttttatttatatttttaaagacaggtaagaacagtgcgtctcaaaccgcg
atatttcgagagcacggaagcgcgtcaaaacaccagcttttttaaagttt
tgtctcgtttacccaaacgctgcaatcctgcgtaggctttgggctcaaga
ctagaacccccaatacgagacattggcctgaccgaaaaaaaatcatcatc
aNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGTGG
AAGggaacgcttgagacgaatgtttgggaaatcaaaaagacaacttttgt
gagaatgttgagttttgtttatatggctgtttgtgtcGCACtgaagaagg
catattgatgtaactgtgtGGTGGTGCATAAGATTTCATTCATTACattt
tggaaaatatgcaaaacctatttaaaaagaaagtatcaatataaaactta
catgcataattggcattataccttgaagtcgggtaacttgcatcagtgga
gggaaacttgcataccCCTCAAATGAATGGCCTGTCTGGTCATCATTAAA
TACAAGGTTGAATACGACCGACGGCATGGCCTCTttattaatacttttta
aaaatggcccgcgcgtaggacccaatatttatattttaaattccttattt
tagcaaacaaatttaaaaatcttcatcttgattcaaatatatattgttca
aatataaaagttaatcatatattttccaattaagttaggaaaattattaa
aaagaatgatttgaatcttacataatatggtcttctttttattcttcatc
ccgttcccttttctcgtggtcttctcctattcgaagcagaatttttctgg
atcgttttttgtactgttatacaactttgtgaatcaaactggtatttgga
actttgaatttgtctaatgaaaatatttaacaatggatgatgataaacca
ggaaaggtaaataaaatttaaattctACTATTCCTATGAATGACctgaac
atggtccgaacaacatgttcgggccgattcaataatacttttttgtggcc
cgagcatggtccgaacaggcccaAACATGTTcaggccatgccgtgggtcg
tggttaaatcaaacaaaatggtagagtagagctgcgagaggagctgcgta
gttcatttgttttgaaattttgctactTTAAGTGGGCATTTGATGGCTAC
GCAAGTTTccttccactgatgcaagttacccgacttcacagtattgaagt
gtaatcttgtagaagaaagggGTCACTCACGTATCACGCGTGTTCCAAAa
gacaaaacaatggaaatgagTCAATCCGTTCAGCTGAccaaaatgacaca
aaaatgacaaaatgaccTGTCAAGACATTCtaatatctttttgtttggta
aagcaaccaatttcaaataaaaagtatcTTGACAAGGAATAAATAAGTTT
TTCATATAGCCAAACAGAATTACCATAGCTTTACCAAAAATAATATATCA
AAGATtcaatttcagccatttttagCCAAATCCAACTTTTGTTCTTACTG
GGGCTTCGTGGAAACTTATCCTGTCCATGTGTAAACATTCCCGTATCTTT
GTTATGTACCGttagtggtcctaaatccgacagccctgcctaaatccgac
cccccaaataactgctatgaaaaaaaattctatgtttagaaaCATTCCCT
CTCtgagttgaacaataaactatattgcaagaactctcgaagcaaaacat
ctaacaagatgactaaaatgtcaagatgtcaattaattaatgtgataaaa
agtGTGAGTTAAAATAATTACCTATATTATTCTGAATCcattgctcgtgt
ttaaaacgttaataattttgtaataaaaaattatgttttgtataagaagc
aattaatgttttggttcaattggttcagtgtatcaaatctctcagtttag
ttgacactttggtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTGACTACCCGTTGTCAAACCGGGATAAGACAGGGGTAC
tgcaataaaaagttatgcaagAAAAACCATAATTTCGACCTCAAAAGGTG
ACTTTCTttgccaataacttttgatagaattgttCCCGTAATTTCCCCCT
TTCAGTAGGTCTTCCTCTATCTTATATATGctttagaaaaaccaaaaaca
ttgcccACGAAGCCCCAGCTAATAATATAACCCCCTGGTTATATCTTTGT
ATTCTTATCCTATAAATATAACGGAACGGCCATTCTACGGAAATTGCTGT
CACGTGACTTTTTTCTACCGTGTGATACAAATTGCGCATTTTCATTGGAT
GTTGAAAATTTATACAAAATGGCGAAAGGacgttttttttatgtttatga
ttattgaaagaattcagttgattttaaggttttaattatttctttttctt
ttgccatgtgtactaaaagatTCTACAATGTTTGTGGAACTCAAATATCC
aaaagtttttctctttttcatggaaaaatgagctataaaggcaatttctt
tgcttaaggtttgttttttcttcgtgaattttcattttcaatctttcttt
gcttaaggtttgttttttcttcgtgaattttcattttcaatctttcttta
aagatttaatattttatcaattatcTTGGGTTTTTCAGGGTTTATTCTAG
GACTGTTTGGGAGTAGAGAGCTTTTTACAGATCTTAATAAAAAAGGTTTA
CTAATTCTTTAGATATAGTCAAAAGTTTAGACATTGGTAAAACTTATTTC
TCCGATCGAACATTGACACACGCATTTCAAAATTAGACACGCGTGTTGGG
TGGGGGGGTGGTGCTGTAACCCCCCACCAATGTGTCCAGGGCTAAGCTct
ggtgggggggggggttcagggggCGAAGCTTTGACTTGCATCAATATCTT
ATATCTGTTCCTTACACCAATAAGCCGAAAGTAATTACTGCCTCATCCCA
AActttattttgctaaaatttccacatcagaaatttttaaactatctgcc
attatgactttctcgAAGCCAATCTGAAATTAATTCCTTATGGAGTTCTT
TTcagagatttgtaaaatagctaagttggCAAAGAAACTTTCCCcagggg
tttgaggaaaaagcagaaaaaactgGCGTCATTTGTTATTTATTAgcaat
atatttaaatttgtgcTGTCACATGCTTAAAATGtttgtgcaaggcactg
agaggccacgtttgccaaaaagaagggccatgTGTGGccatgtaccttat
tggtaCGTAGAAATATGATAACAGTTCGCGAAGAAGTGTCagaaagcaat
cagtagaagagaccacttttgtttttgcaggtttttgttgtagatttcaa
tataaacttctcacagggattacttgtcaataaCTTAGAATAGCTTTCTA
AAGATTGCCGGAACAGCGGATAATTGCtggaaaaacagtttttctggAGT
TTCTCGAGctgttctttatatttttcatcaCCAATAACCCCTCTTAACAA
AATAGATAAAGGTACTTGTAATAATTAAAAGTGTCTGAAACAGATTTCTG
TCTCATCAAAGTACAAAAAGAGGATTTTCTTTCTCTGCAATCTAAATAGC
TGAAAAATTAGCTCTAATATGCTGagtaaatttaaaaataaatttgtgct
ATGATCCTAGAGATGGGATTGTTGGGATTGCTATGAAAAGACGTTtcctt
ttgatgaaaattgatTCCCAATCATTGATTCcaactttcttcttttcata
TCTATAAACAACATTAGACCAGCTTACAACACATTCTATTCTATACAGTT
GCCACATTTTGCATTGAATAAACACGGGGATGCAAAAATAGTCTGTATTG
AGCaggaatttttcttttcatagaGATGCAGAACACAATCAGCATGATAA
TTTCTGGCATGGATGTCTTGGAGCATTGGCTTTATTTCTTGTCATTTGTC
TTTTGATTTGCCCAAATGGTATGTtggattttttttgataaaacagaGAA
CAAAGTGTTGTTTTTGTATTAGAATCCAACTTGTTCCTTCATAATAGTTA
TAGCTGTATTTTTTTNATGTTGTTTTTGCATTAGAATCCAACTAGTTCCA
AAAATTTGTATCTTCATCACAGATCTTCATAATAGTTATAgctgtatttt
ttttcaatacatAATGCAATTCGATTACCACTTTCACTTTATTAACTATT
TTCAGGACCTTTCATTCGTCCACATCCTGCAATATGGCGTCTTGTTTTTG
GTATGTTTTGTTCATTAATTTTCTCTACTTGAAATTAAATAACCAGCCAT
TCTTGAAAGGCTAATTTTAATGTTTAGATTTGTTCACCCTACCTATGGTG
CAATCACAATGATTATGCAAGAATAACAGCTAACCTTCGCTTCAATGATA
AATCTTTAATATGAGGGATCTAAACTGAAACAGTAAACAAATGCCTGTGA
TTTATTATCCCACAGAATTTTCTTAGGCAGAAAGAAACTTACCAACAATG
GCTCTACTTTGTCATTTTAGGTATAAGTGTGGTGTATGCTATGTTCCTTG
CATTTCTTCTGTTCCAAAGTTATAAAGATTTTCTGACCATTCTTCAATAT
TTTGATCCAAATCTGAAAGGTGCTGAGCCTGATACAGAAGTAAGTAAAAA
TGTTTTCAGAAGAAAATAATGTTCAGAGAAACTCAACCTTAATAAAGGTC
AATCTTCAATTGATCTTTTACCTTGATTTGCTTGTCAATATTAACATcat
aaacaacaacaacaaacttcAAGGTCATATAGTATTCACCTAGTTATATT
TATGCAATGGTTTGAGATAATTATATAAGGCAACAAAGAATCACTTGGAT
AAAACCTTCTCAAGCCCAGTTGAGCTAAGACTGTCCCTTCTGACATGGAA
GGTGCTACCTGCATACATTATTTAATTACAAAGTTGCCTCCTTCAGGTTT
ACTCAGATGACTGCTCATGGTCCGTGTTTGTTTCACGATTGGATATCTTT
TGTGTGGCTCACTTCCTTGGATTCACTGTCAAAGCCATTATGTTGAGAAA
TGCACATTTGCTCTGGCTCATGAGTATCACTTGGGAATTTACAGAGGTAT
TTCAATATTGAGCTTTTTCGTTTTTATAGGTTTCACAAGGAAACCTATTA
AGGCTGATTGTTAAAGGGTTCaatctcttttgaaatttttaaaagttcaa
TTTAAAATTCTGTTCAagttatgtttttaaaatcagCTTAGGTAATCTAC
TTGTCCTCTCTCTCTTTTTTATAAATGGTTGCTGTATTTCCATTATTAGT
TTAAATTTAAAGAggaattctttttgttttttatacttACAGATTGCATT
TTCTCACTTactggaaaatttcaaagaatgtTGGTGGGATTCTCTTATTT
TGGACATTTTGTTATGTAATGGTCTTGGAATACATTTTGGTTTGTTTATC
TGTAAAAAGTTGGAAATGAGAACATATTACTGGGAAAGTATCAAGTATGG
AGAGTAATATTTTAGAGACCCCCTTTTGAAATTCCTCTTTCAGGAAAATT
ATTTGTTCCACACCTTTgtctttttgagaaatttttctttgtttcctGTG
AATCTGTGTGAATCAGCATGCTTTACCATTAATTTTAATTCAGGCACTGG
CAAAActaatataattttttataagattcttTGATAGGATAACTGCAAAG
GAGTATTGAAGATGGAGCAAGGCACATAGAGATGGGATCaaacttttaat
attttatctaATTTTTCCCAATCAGCCTGGTATTAGTTTAATtgatcaac
tttttttttgaaaaaaacttcagaGATCTCCATGGTGCATCAAAGAAATT
CAGAAGAGCTGTCATGCAGTTTACACCAGTCAGGTTAGTTAAACTTAATC
TTTTGGGTATATACCCATCTTGCAAAAGGTATAACACAAAAAAAACTAGA
CATGCATTGAACAAGATATTTTGTCTCTAGGGGCTAGTtacatttgaaat
taaaaaagatttattaagaaaataattttgaaaatgtacTTTCCTAACTT
TTAAGCTGGACATCAGTTCAATGGTTCAATCCTAAAGATGTGAAGTCAAG
ATTCTTAGCTCTGTGTCTTTTGGTTCTGATGTGGCAGGTTAGAGAGACAA
ATATTTATTTTAGAGGGAGATTTAAACTTATGTGGATCTTTTACTTGAGG
GAAAAAATGCTCATGTTGTTTTAGTAATCTAAGGTTCTAAAGTTTGGCAG
CTTTGTGATATAAAAATTGTTGGTAAAGTAAAGTGATGAAAAGTATGTGC
CTAATAACTGAACGTTTTAACTGCATTTTCTCTACGTCAAAATCTTTACA
AGACAAACAGCATAACAGATTGTTGACCTGCACCGTTACGTTGACAGCGA
CGACATTATGTCTTTTCAGACGTCGTCTTGTTTAAGAAACATGAATGTCG
GGTTTTAAGGCGTCACAGTTAACTTGACGTATGTTTATGAAACCGACAAT
TTCGTTCACCCATTATCATGAAGGTGCCTAAAGTTTGTTATCTGGAAGAA
AACATTTTCGATCAAGGCCAGATAAGTCACATTAAAAAGATTAAGACTAA
TGATAAATGTTTCTAATCCTGTCTAATCTGGAGTTTAGATTAATTGCGGT
CCATTTATTGCCAATCCAAGCAATGATACTTAAAATCCCTTGATCTCTTA
TAGGTTGCTGAGTTAAACACATTCTTTTTGAAGCATATTTTTGCCATTCC
AACACACCACTGGTTGAATGTGGCACGTATTGTTTTGATTAGTCTTATCA
CTATGCCAACCACCaggtaaaaatatattttaccgATCTTCTTATGtatc
aggccatttttcatgccctttaaaCGTCCAgttatcggacgctgcccctc
ttgaaattactaaaatattgataaaaacagCCTATTTAGTGgaaaaaaca
ctggaaaaagtgccctttttggccaccaatGGTCAATGCCgcgcctttct
aaaatatgggcTGTGTATAGCTCAAATTTATCCAGTTGTCAaacttttta
tcaataattGCATTTATAAAGAAGCTTAAAAAATGCTGCTATTAAATTTT
GCCTATTAAGTTTTGATAGGTTCTTTATTTCGTATGGACAAGATACAGTC
ATTTTCGGCTGATGTGCTTATGATGATGTAGCTTTGTGAAGCctgaaatc
tttcaaaactttctttgaaaactttcaaaagtcTTCTGCTTTATTGTTTT
CCAGGCAATATTATTTATATTCAACTGATACAAGATGTAAAAGGTTGGGA
ACTCAAGCTTGGGTTTTTGTGTAAGTTTATACTCTCATAATGTAAGCATA
TCAAGTTCTTTATCAATCTGATACTGATATTTTCTAAGGGGCAATTGACA
ATTGCCCCTTGACAATAACAACACCTTCCTCACAGACGATTACACCTGGG
TGATCaaccccttggaaaaaattccaGGCTCAACAAAATGTTAATTGAAT
CGTATAAAAAAGACCGtgtcaatttttgataaaactcAGTCTGttcacat
tttttatatttcttccTAATATGACTTTTAACGTAACAGAATGACAAACA
AATCAAATTTCCTTGACTGatcaatctttttgtttttcagcaAACGCTTA
CCCAACTTTTTGGTTTGATTTGAACCAACGTTTTAAAGTTTCTCCCTGGT
AATTGTTCCTGAGAGGAAATTGTCTGCGCAGGGCAACTGTCCAGAGAAca
attattttgagattgacagtcaatgaaaaatattgaatatgggccaaatc
aatgttttttgacctaTTAGTTAGTAGTGATTGTCCTGTGGGGCAATTGT
CCTGTCAAGTATTGATATAGTCGTAgctttatatttatatttatatcaAA
TATTTGATTCAGTGACATAAATCATTATGCAAAACTGTAGTACTTTAAAG
CTACCAGAATTAAAAGCCACCCTGGGGATCAAGAGTTTTAAGTTCATAAC
ATTAGGTGTAGTGCTCCTAGGTCCAGACCAGAAAGAAATCtgatgttttt
gtttaaaagtaaTGACATATCATCTCATTAAAATGAATTTATCATAACTT
TGCTTTTAGTTGTATTACTTGCTTGGAAGCCATTTTATGTATTCGTCATG
CTCGAGAACTTTTCTCACAAACACAATACACATGGGTGGCTGCTTGGGTA
GCAGTAGAAAGTTTCGCTTGCTTCATTCTGGTCTATGTTCTTATCATCTG
GCGTGGAAAGGTATCAATTTCTCATATCCCACAGTTGATGCCACTGGAAT
CTTTATATTGTATTTTCACCTTGTTTTTCATGAAACACAAAGCTTATTTC
AGTTTATTCCGCCTCATTCAAGTGCCTTAATCAGTGAAATAGAATTTAAA
CTCTACTGAAAGGTTCATAAAAAGTCAACCTGTATTAGTTGATAATTTAA
AGTGCTGTTAGACTGATATTTGAGGTCATTTTCAGAAAAGGTTAGATGAA
TTAGCAAACAACTGTCTCACATACTTCCATATAAGTGACAttgttttact
ttaaatttcCAGAGAAAACTTACTGACGGCAAAGTACCATCTAGAGTACC
ATCACATCTACGTTTCAAAGAAGTGGACGGTCAAGAAAATACTGATACAG
ATTCAGAAGACTATGCTGAAGATAAGAGAAGCTCATACTCAAGAAAGTCT
TTGCGAACACGACGAAGGACAAAGAAAGAGTGGTAAGCAAAACTGGGTAT
TGTTAATTGATAGAGATGTTTTGTATGCTTGTGAAACTTTTTTAAGTAGC
GTTGTGGATTGATCTTTACCAGGAGAAACAAATCAACGACTAGAATATTA
AAATtaaagttggtatcgataccaattttagTGGTTGTAGTGTAGGTTTT
GAGGCATAGTAAGCAGGAGATTTATTCTTTGTGACTTTGCCCAATAAAAG
GGCTGCTGAGAGTGGCTGGCCCTAGTTTAATTTCCTAATTAATTTTCCTA
GTTTAATTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009165XLOC_009165Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016407-exon-sc0000237-1491911889:169205..169462TCONS_00016407-exon-sc0000237-1491911889:169205..169462Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1510915933:169205..169462TCONS_00016407-exon-sc0000237-1510915933:169205..169462Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1575043694:169205..169462TCONS_00016407-exon-sc0000237-1575043694:169205..169462Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1491911889:175278..175372TCONS_00016407-exon-sc0000237-1491911889:175278..175372Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1510915933:175278..175372TCONS_00016407-exon-sc0000237-1510915933:175278..175372Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1575043694:175278..175372TCONS_00016407-exon-sc0000237-1575043694:175278..175372Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1491911889:175610..175654TCONS_00016407-exon-sc0000237-1491911889:175610..175654Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1510915933:175610..175654TCONS_00016407-exon-sc0000237-1510915933:175610..175654Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1575043694:175610..175654TCONS_00016407-exon-sc0000237-1575043694:175610..175654Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1491911889:175925..176043TCONS_00016407-exon-sc0000237-1491911889:175925..176043Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1510915933:175925..176043TCONS_00016407-exon-sc0000237-1510915933:175925..176043Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1575043694:175925..176043TCONS_00016407-exon-sc0000237-1575043694:175925..176043Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1491911889:176351..176500TCONS_00016407-exon-sc0000237-1491911889:176351..176500Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1510915933:176351..176500TCONS_00016407-exon-sc0000237-1510915933:176351..176500Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1575043694:176351..176500TCONS_00016407-exon-sc0000237-1575043694:176351..176500Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1491911889:176747..176898TCONS_00016407-exon-sc0000237-1491911889:176747..176898Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1510915933:176747..176898TCONS_00016407-exon-sc0000237-1510915933:176747..176898Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1575043694:176747..176898TCONS_00016407-exon-sc0000237-1575043694:176747..176898Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1491911889:177228..177287TCONS_00016407-exon-sc0000237-1491911889:177228..177287Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1510915933:177228..177287TCONS_00016407-exon-sc0000237-1510915933:177228..177287Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1575043694:177228..177287TCONS_00016407-exon-sc0000237-1575043694:177228..177287Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1491911889:177460..177541TCONS_00016407-exon-sc0000237-1491911889:177460..177541Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1510915933:177460..177541TCONS_00016407-exon-sc0000237-1510915933:177460..177541Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1575043694:177460..177541TCONS_00016407-exon-sc0000237-1575043694:177460..177541Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1491911889:178108..178220TCONS_00016407-exon-sc0000237-1491911889:178108..178220Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1510915933:178108..178220TCONS_00016407-exon-sc0000237-1510915933:178108..178220Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1575043694:178108..178220TCONS_00016407-exon-sc0000237-1575043694:178108..178220Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1491911889:178659..178724TCONS_00016407-exon-sc0000237-1491911889:178659..178724Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1510915933:178659..178724TCONS_00016407-exon-sc0000237-1510915933:178659..178724Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1575043694:178659..178724TCONS_00016407-exon-sc0000237-1575043694:178659..178724Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1491911889:179514..179664TCONS_00016407-exon-sc0000237-1491911889:179514..179664Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1510915933:179514..179664TCONS_00016407-exon-sc0000237-1510915933:179514..179664Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1575043694:179514..179664TCONS_00016407-exon-sc0000237-1575043694:179514..179664Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1491911889:179967..180415TCONS_00016407-exon-sc0000237-1491911889:179967..180415Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1510915933:179967..180415TCONS_00016407-exon-sc0000237-1510915933:179967..180415Clytia hemisphaericaexon
TCONS_00016407-exon-sc0000237-1575043694:179967..180415TCONS_00016407-exon-sc0000237-1575043694:179967..180415Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000237supercontigsc0000237:169205..180415 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.1627	37.1735	16.8989	12.8061	33.7298	26.1117	14.34	18.3812	26.5836	27.0881	17.6389	17.9332	15.8634	15.1629	15.797	19.0449	21.6963	19.3035	8.10612	9.29541	14.2267	13.4692	39.8204	36.3816	7.09352	11.376	12.8819	7.65659	29.9036	27.0098
Blast
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BLAST of TCONS_00016407 vs. Swiss-Prot (Human)
Match: PTSS1 (Phosphatidylserine synthase 1 OS=Homo sapiens GN=PTDSS1 PE=1 SV=1)

HSP 1 Score: 387.111 bits (993), Expect = 1.086e-127
Identity = 208/439 (47.38%), Postives = 284/439 (64.69%), Query Frame = 2 
Query:  110 GSMTTSCDENDDDP-----SEQKVGDITITFFYKPRTLTALALCIIAMLYFAFVRDAEHNQHDNFWHGCLGALALFLVICLLICPNGPFIRPHPAIWRLVFGISVVYAMFLAFLLFQSYKDFLTILQYFDPNLKGA--EPDTEVYSDDC---SWSVFVSRLDIFCVAHFLGFTVKAIMLRNAHLLWLMSITWEFTEIAFSHLLENFKECWWDSLILDILLCNGLGIHFGLFICKKLEMRTYYWESIKDLHGASKKFRRAVMQFTPVSWTSVQWFNPKDVKSRFLALCLLVLMWQVAELNTFFLKHIFAIPTHHWLNVARIVLISLITMPTTRQYYLYSTDTRCKRLGTQAWVFVCITCLEAILCIRHARELFSQTQYTWVAAWVAVESFACFILVYVLIIWR---GKRKLT-----DGKVPSRVPSHLRFKEVDGQENT 1372
            GS T S D+ +        +EQ+V DITI FFY+P T+T L+  I++++YFAF RD +    DN W G L  +  FL+I +L  PNGPF RPHPA+WR+VFG+SV+Y +FL FLLF +++   +++ + DPNL+ A  E D   Y+ +C   +W   +S  DIF   HF G+ +KA+++R+  L W +SITWE TE+ F HLL NF ECWWD +ILDILLCNG GI  G+ +C+ LEMRTY+W S KD+H  + K +RAV+QFTP SWT V+WF+PK    R   + L +++WQ+ ELNTFFLKHIF     H L+  RI+ I  IT PT RQYY Y TDT+CKR+GTQ WVF  I  LEAI+CI+  ++LFS+TQ  +V  W+   +F  F+ +Y +I +    G R+ T     DG     +  H R K   G E++
Sbjct:    6 GSRTLSKDDVNYKMHFRMINEQQVEDITIDFFYRPHTITLLSFTIVSLMYFAFTRD-DSVPEDNIWRGILSVIFFFLIISVLAFPNGPFTRPHPALWRMVFGLSVLYFLFLVFLLFLNFEQVKSLMYWLDPNLRYATREADVMEYAVNCHVITWERIISHFDIFAFGHFWGWAMKALLIRSYGLCWTISITWELTELFFMHLLPNFAECWWDQVILDILLCNGGGIWLGMVVCRFLEMRTYHWASFKDIHTTTGKIKRAVLQFTPASWTYVRWFDPKSSFQRVAGVYLFMIIWQLTELNTFFLKHIFVFQASHPLSWGRILFIGGITAPTVRQYYAYLTDTQCKRVGTQCWVFGVIGFLEAIVCIKFGQDLFSKTQILYVVLWLLCVAFTTFLCLYGMIWYAEHYGHREKTYSECEDGTYSPEISWHHR-KGTKGSEDS 442
The following BLAST results are available for this feature:
BLAST of TCONS_00016407 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTSS11.086e-12747.38Phosphatidylserine synthase 1 OS=Homo sapiens GN=P... [more]
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