TCONS_00016395 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016395
Unique NameTCONS_00016395
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016395 ID=TCONS_00016395|Name=TCONS_00016395|organism=Clytia hemisphaerica|type=transcript|length=514bp
TCTGGTCAATCTTGATATGGGCAAGCTTAATCAGTCATTTTTTCTGATAT
AACAGGTACTCAAATTTTCCTAGAGGGggctttctttcaaaatgtgaacg
gaaaataaggttttaaaaaaaatgatcaaCATCATTGTATGATAATTCAT
CAACAACATGTTTTTTCCAGCTTGGTTTTTGTTGTTCTCACAGCCAGagg
atatgaaaaatgaaaaacacagtAAGAAacgccaaaaaaagtttttttgg
catataaaatcaaaaatgttgcGGACATAAATTTTACCGTTcacaaagtt
atgtccgcacagATTTGAcacagaaaaatttgaaaagcctTTAGCTCACt
ggtttttacattttaaatccTTCCCAGATAATGGGAGACTGGAGCaagtt
gcaaaaaaacgccagtTATCTTGGTCAACgcgaaaaattattaaattaaa
aaaaaattattaattattaaaTTGAAGTACAGCGTCTTGTTTCCGTTCAC
ATTTTTGAGTTATG
Run BLAST on NCBI

transcript from alignment at sc0000233:396144..396657

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016395 ID=TCONS_00016395|Name=TCONS_00016395|organism=Clytia hemisphaerica|type=transcript|length=514bp|location=Sequence derived from alignment at sc0000233:396144..396657 (Clytia hemisphaerica)
CATAACTCAAAAATGTGAACGGAAACAAGACGCTGTACTTCAAtttaata
attaataatttttttttaatttaataatttttcgcGTTGACCAAGATAac
tggcgtttttttgcaacttGCTCCAGTCTCCCATTATCTGGGAAggattt
aaaatgtaaaaaccaGTGAGCTAAaggcttttcaaatttttctgtgTCAA
ATctgtgcggacataactttgtgAACGGTAAAATTTATGTCCgcaacatt
tttgattttatatgccaaaaaaactttttttggcgtTTCTTactgtgttt
ttcatttttcatatcctCTGGCTGTGAGAACAACAAAAACCAAGCTGGAA
AAAACATGTTGTTGATGAATTATCATACAATGATGttgatcatttttttt
aaaaccttattttccgttcacattttgaaagaaagccCCCTCTAGGAAAA
TTTGAGTACCTGTTATATCAGAAAAAATGACTGATTAAGCTTGCCCATAT
CAAGATTGACCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009157XLOC_009157Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016395-exon-sc0000233-1491911889:396144..396657TCONS_00016395-exon-sc0000233-1491911889:396144..396657Clytia hemisphaericaexon
TCONS_00016395-exon-sc0000233-1510915933:396144..396657TCONS_00016395-exon-sc0000233-1510915933:396144..396657Clytia hemisphaericaexon
TCONS_00016395-exon-sc0000233-1575043694:396144..396657TCONS_00016395-exon-sc0000233-1575043694:396144..396657Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000233supercontigsc0000233:396144..396657 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.97745	2.16805	1.87606	1.96816	2.24266	1.85935	1.06374	1.54006	0.686147	0.728489	0	0.309875	1.4008	0.723062	0.594455	0.496177	0.960535	0.268505	0.123651	0.517568	1.59396	1.48113	0.134441	0.970027	0.499553	2.58653	1.65733	1.87243	1.16196	0.404451
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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