|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016364 ID=TCONS_00016364|Name=TCONS_00016364|organism=Clytia hemisphaerica|type=transcript|length=2807bpRun BLAST on NCBI transcript from alignment at sc0000233:119961..223448- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016364 ID=TCONS_00016364|Name=TCONS_00016364|organism=Clytia hemisphaerica|type=transcript|length=103488bp|location=Sequence derived from alignment at sc0000233:119961..223448- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00016364 vs. Swiss-Prot (Human)
Match: DYH2 (Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3) HSP 1 Score: 136.346 bits (342), Expect = 2.941e-32 Identity = 132/561 (23.53%), Postives = 250/561 (44.56%), Query Frame = 3
Query: 1125 FVLDDVTLDHAHNLYSALQTANGHCLLISDKSHGRRKMINIVSKLMRVEVFQVPPPNSTDSITIENTFNVIKDACNAAGLNGKPV-ILSIQGNMSDE-VDQCLSALLCDGFCPGFYEPSEIALVITQHLPGGHLNNVRKINNISQLVERFFQRVRNNLQIVVGIKRSEMCD----FLTRFPTILHKFHLVDFYGNNDAHFWSAFSTRWLIENMTGEDIDAPNLSELIGTVHHVTKQQLNETCGAEADR--YISPLKLMECLQIFKKLFHSIREVSQKRSAYLNKAMAKVFQAKEDIRKSQDEIDRLQPLLETARSIAEDAEKVMKSAQ---ESYLTV----KKSCEDQYTEI----ERL---KIPCEQLRKETNQDFEQLSPLFQAALEALNMLSKGDIVEMKSYPAPPEGVKLVAILLCVLFDVPESYKEAILLLRSDNFIQRLQFLDKDNISDSAYRKLCKFVNDPETQPTVVASKSRAAEQLCLWLRGIHSYCTIYRQLQPKKQSLKEAELKIAKAESKLCEMKLRTSDLRDLLEKEIVNYKGKMKIVKGLEKKQQDF 2741
VL ++H + + G+ LL+ GR+ + + S + FQ+ T + + IK AG+ K + + ++DE + ++ +L G P Y+P E + + + + V + ++ L +RV+NNL IV+ + S M D ++ ++P +++ ++++ + + LI G + I H + Q ++ E R Y++P K +E L +KKL R+ ++ L + K+ + +E ++ E+ EDA+K + Q E YL + K+ ++Q + E++ +I C+ L +D E+ P + A+ AL L+K DI E+KSY PP V++V + +L ++ EA L NFI+ L DKDNISD +K+ + P+ QP ++ S AA+ LC+W+R + Y +YR ++PK+ + A ++ + ++ L E + + ++ + LE Y K+ + L KK ++
Sbjct: 2734 LVLFREAIEHITRIVRVIGQPRGNMLLVGIGGSGRQSLARLASSICDYTTFQI---EVTKHYRKQEFRDDIKRLYRQAGVELKTTSFIFVDTQIADESFLEDINNILSSGEVPNLYKPDEFEEIQSHIIDQARVEQVPESSD--SLFAYLIERVQNNLHIVLCL--SPMGDPFRNWIRQYPALVN-CTTINWFSEWPQEALLEVAEKCLIGVDLGTQENIHRKVAQIFVTMHWSVAQYSQKMLLELRRHNYVTPTKYLELLSGYKKLLGEKRQELLAQANKLRTGLFKIDETREKVQVMSLEL--------------EDAKKKVAEFQKQCEEYLVIIVQQKREADEQQKAVTANSEKIAVEEIKCQALADNAQKDLEEALPALEEAMRALESLNKKDIGEIKSYGRPPAQVEIVMQAVMILRGNEPTWAEAKRQLGEQNFIKSLINFDKDNISDKVLKKIGAYCAQPDFQPDIIGRVSLAAKSLCMWVRAMELYGRLYRVVEPKRIRMNAALAQLREKQAALAEAQEKLREVAEKLEMLKKQYDEKLAQKEELRKKSEEM 3272 The following BLAST results are available for this feature:
BLAST of TCONS_00016364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.