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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016355 ID=TCONS_00016355|Name=TCONS_00016355|organism=Clytia hemisphaerica|type=transcript|length=2803bp
CAATTGTGGTGAAGCAGGGTGAAGTAATACCAAGATAATCATATGGAGAT
CTTGtataaaagtttagaaaaataaCAACAGCTCACACAAACGATCTTGA
TATAAGCTGGTGAAACAGCTAAACATTCGACTCTGGTTGACTGCTAGAAC
TTGCAAAAGGAATCTAGCTCTTGTTCAGTTTAGCTGAGAATTGTAGACTT
CTTAACAGCCCCGGTTGCATAAGCATGGGTTTGTTGAAGGTCTGTTTGAC
GTTCTGTTTGGTCATTGCtgtagtcgttgaaaacagaagAATCACGAAGT
TGGAacgaattgaaaatgttttgaaaagaacGAATCGTATTCTTGACGAT
TTGAACAGAGAAGttgTCATTAGCAGTGACGAAGAATCTTGTGAGGATAA
ACAGTCGAAATGTGGAGACTGGAAAGAGAGAGATGGAGATGAGTGGGAAG
AGAATTGTGCAACCAAGCCATACCTTCAGTCACATTGCAAAAAGTCTTGT
AACTTCTGTGACAGCGGATCCGGTGGAGTAACTGAAGAGCCGCCAGTCAC
CGTAGCACCACCAAAGACCGAAGCACCGCCACCCACAGAAACACCCGAAT
GTGCCGATGTCAAGCCGCAAGCATGCGCAGAAGCCAAAGAGAAAGAAACA
AATCCTGTCAAATGGGAAAGAAGATGTAataaaggaaaatttctattgga
CAATTGCAAGAAGACATGCGGACACTGTGATGGAGGCTCAGGTGGGTCTG
GCCAAACTTCTGAAGCACCTGTTAAAACCACCGAAGCCCCTGTTAAACCC
ACCGAAGCCCCTGTCAAAACAACCGTAGCCCCTGTCAAAACAACCGAAGC
CCCTGTCAAAACTACCGAAGCCCCTGTCAAAACTACCGAAATCCCTNGTT
AAACCCACCGAAGCCCCTGTCAAAACAACCGTAGCCCCTGTCAAAACAAC
CGAAGCCCCTGTCAAAACTACCGAAGCCCCTGTCAAAACAACCGAAGCCC
CTGTCAAAACTACCGAAATCCCCACCGAAAAGACGGAAGAACCTGCTGGA
TCTGGTAGTGGTATTGATAGCTTGATTGAAGAATGTACAAGTGATAACAA
AGAACATTGCGAATGTGGTGAGGCACCATTCGAAACATACGTCTTCAAAA
TTGATACTCAAACAAGATGTTTTACTGTGTATCGGCCAGAGGGTTTTGAA
GGTAAACCAGTACCAGTTGTTATTACAAGTCAGTGTTATGGCAAAGATAG
ATTGATGAGTATTGGAATGACGAATACAATGACTGGTGATAACGTTGCAG
CTGCTCGGTATGGATTTGCTCGGATCGGATTATCAACTCCAGATGGTGGT
TGGACCTTTGGTAATAATGGGATTGTCAATGATACTGTACGAATGCCTTG
CTCCGAAGATGACAGCAAAGACATTGCTTATGTCAATAAGGTTTTCGAAT
ATATCGACAGTCATCCTGATAAATTTGATGTCAACCGAATCTACACTGAA
GGATTCTCTCAAAACTCCATGTTCTCAGCTTATATTGGATTCTGCCATTC
TGACAGGGTCACTGGTATCTGGCAAGGTGGTAGTGGACTTGCGTTTAAAT
CGGACGACGGAATCAATCTCCCTGGAAAGCAAGCCAAATGCTCTGCTATC
TCGTATGCTGAGGATGGCAGAAACTGTATCGAATGCACCGACTGCAAATA
CTGGCCTATCTATCCATGCTATCAACCAAAGAAGCCAATGATTGACTGCA
TTGCTGACTATAACAACGATTACATTGCATCATCGAGATCCAACTCTGAA
ACAGAATCGACCACATTGAATATGTACAACGTTGCCAAAGATGAAGGACA
CGATGCTCGAATGTTGAGATTCAAACCATCAGATGATGGCACCATCGCTG
GTGGTCACAAGAATCCACGAAATACAGTTTACTGGCAAATGGGATGTTGG
GGAATGACCGAGAAATGTTCCTCAGAATGTGAAACCTCTTTCAAGACATG
CGTCAATGGCAAAGATGTGTCGAAAGCTGAAAACCGTGTAAACTCGTTTG
AAGCTTGTATTGAGAAAGATACCTTCAAAGATCTTTCTGGTTGTGATTCA
ACTTGCTCACCTACATTCGAGATGCTAAAACAAAGCGAAGTGCCGTACAA
AGCGGAATTTGCTTACGGAAAATTTGGTGGCAATGATGAAAGCGGATTAG
CAAAACCAAGCACAAGTCAGTGTACCGCCGAGTGAAAATTGACCGCCACA
AATATAGAAAAAAAGCACTATGATAAAACACTATATGTAATGTTTTGCAA
TTTCACATTTTATAAGCAATTAGTCATTTCATTTATCATTTGTAAATCGA
AAGAAGAGATTGTAGAAGAAATTTAGCACATGCTTGCATAGTACACTCTA
TTCAACTCTTATTTTACAAGATTGGTCGCCTCTAAGAAAATCTAAATCAC
TTGATCTAGATCTTCTGATGTAAGAGATTAATTTCCATAGTGCGAGATAA
AGGAATTTTATAGATTTTAATGAGAATCGCATTTCACGGAACACAACTAA
AAACCACGAAAACTCTTTCCGCGAAAATTATTTAAggcaaaaatgaaaat
cagttgacaaaagaaaaaatatatacctCAGATTTTGACTGGATTAGTTT
GATTCCAAGTTCACAAAACCAATGGATTGTGTTTGAAAGCCAACAAATGC
ATCTTTGTTAATAATCGATAGatgatatttcaaaactatttattattttt
cttaaagTATTTCtgtaaaaagaatgaaaatcatatcaaaaaatatttca
tcc Run BLAST on NCBI protein sequence of TCONS_00016355-protein >TCONS_00016355-protein ID=TCONS_00016355-protein|Name=TCONS_00016355-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MSIGMTNTMTGDNVAAARYGFARIGLSTPDGGWTFGNNGIVNDTVRMPCS
EDDSKDIAYVNKVFEYIDSHPDKFDVNRIYTEGFSQNSMFSAYIGFCHSD
RVTGIWQGGSGLAFKSDDGINLPGKQAKCSAISYAEDGRNCIECTDCKYW
PIYPCYQPKKPMIDCIADYNNDYIASSRSNSETESTTLNMYNVAKDEGHD
ARMLRFKPSDDGTIAGGHKNPRNTVYWQMGCWGMTEKCSSECETSFKTCV
NGKDVSKAENRVNSFEACIEKDTFKDLSGCDSTCSPTFEMLKQSEVPYKA
EFAYGKFGGNDESGLAKPSTSQCTAE Run BLAST on NCBI transcript from alignment at sc0000233:315487..320527+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016355 ID=TCONS_00016355|Name=TCONS_00016355|organism=Clytia hemisphaerica|type=transcript|length=5041bp|location=Sequence derived from alignment at sc0000233:315487..320527+ (Clytia hemisphaerica)
CAATTGTGGTGAAGCAGGGTGAAGTAATACCAAGATAATCATATGGAGAT
CTTGtataaaagtttagaaaaataaCAACAGCTCACACAAACGATCTTGA
TATAAGCTGGTGAAACAGCTAAACATTCGACTCTGGTTGACTGCTAGAAC
TTGCAAAAGGAATCTAGCTCTTGTTCAGTTTAGCTGAGAATTGTAGACTT
CTTAACAGCCCCGGTTGCATAAGCATGGGTTTGTTGAAGGTCTGTTTGAC
GTTCTGTTTGGTCATTGCtgtagtcgttgaaaacagaagAATCACGAAGT
TGGAacgaattgaaaatgttttgaaaagaacGAATCGTATTCTTGACGAT
TTGAACAGAGAAGGTATGGgtgtttcatgtttttaagttGTTTTCACTTC
CCAACCAAAGTGCAATGCTTCAGATCACAGACTGTAGTACACCGGTGATT
GAGTTGCAGTAATGAGCCTGAATGATCCATGTCCAactataaaattaatt
aaatcTCTATGGTTTAGTGCTCAAAAGTTCCATGCTTTTCACCTTTAAAA
TCACTTAtgcatttttaactttttagttgTCATTAGCAGTGACGAAGAAT
CTTGTGAGGATAAACAGTCGAAATGTGGAGACTGGAAAGAGAGAGATGGA
GATGAGTGGGAAGAGAATTGTGCAACCAAGCCATACCTTCAGTCACATTG
CAAAAAGTCTTGTAACTTCTGTAAGTTAAAATCCTGTCTCAAGTAAAAAT
GTAATGTAGAAAATGAAAGCTAATGTGGGTAGAGAAACTCTCTTTCAATG
GGTAATTCAAGTTTTATCGCCTTGTGACCTCTATGAGTAGAACTCAGAAG
AGTCCTTAGATATGAGTAATAGAACAACTATTCTACCAGCACTACACTCT
ATTCTAAAGGGTTGCAACGAATGTGATGATCTGACTGGTCTGTTTCTTCT
GTCGATTCATTCAAAACCTTCTTGATGAAGTCAGGCcaaataacaacaaa
ataagTCCTAGAAATACTTCTTTAAAACAGGGGggacgcagttactacaa
gacagtatgacacttactaccgtggtggtactgtattcagaagttttgaa
aacagttactacatagtgtagtaactgctgtttgggggtggtgccaaaca
ctaaaactagcacttttggtgtagtaagtgcttatattttaattcttttt
aaagaacttccaaaatttttcacaaaaaatgaatttttttgtgaaaaaat
tctttgttaaaaaaatatttttgttataaatggacaaaaatttttttttc
tcagacccaactttgaaataatgctttccctaattatcattaaaatgttc
tcaacagctgttaaccaagtaaattaaaagaaaatctagcacaaaaatgg
ctttaggtctaaaaataatcgcaatttagggtaatttcgagcatgttttt
gatgatatcactcaaaaacaggggtggtacctggaaatcttttctgaaaa
cagttactaccaaggtgtagtaactgcaaagggtggtggtcctgaaaaaa
agtgttgaaaaagcactcactacacatcatgtcttgtagtagcTGCGTGC
CCCCCTGTTTAAAATGTGGATTTTAATCAAATACACAAATAACATGATGC
GTtgctactcttgtctcccgaatagacgtccccccgctaattgttaagag
aaaaaaatccatccccccgctcttattaagaccccctcCGGCAAataaaa
ttcgaataattcaatattttattatagtgtagatagaccttaaacttgtt
aaaattttcctttttgttagtattgccGGTTCATATTTTACGTGCTCTTT
TTTTgttaaactttcttttttgttgttgaaatcgatatcagttaaaaaaa
attctgtcttaaaattacccccccctcttattccatcccccgcttattag
aaaaattaagaacagccgaaTTTACTGGCTCTTATATAAAATAGTATTGG
AAGTTGGGTCGaagacatttatttttctttccacGAACAGTTAATAATTT
CAGAACAAACcaactttttcgaaattctTCCTTTTCCTTGGAGTTAAAGT
TAAGTGAAGGAGAATTTTGTTGGAAAAAGTTATCTTTCGATTAAGGAACT
TAcgtttgaaaagaaataatattATTATTCATAGCTTTCCTTCAATTACA
GGAAAAAGGAAATACCTTCGAcggggaaaagtgacaaaattttggccaag
tgacgaatattttttccccgacgaagttttctcCGATAAGGTATTATAGA
AAAACAAGAACCGATCAGGCTAAAAAACTGATCATCAGACAATCTGAAGT
CATGAAGAAGTGCTTATTCTTTCGCTTTTTCGACCTGTAGTTTTAGGTTA
ACTTATGTATTGAAAATCACTTAATAATTACACAATTTTAAGGTGACAGC
GGATCCGGTGGAGTAACTGAAGAGCCGCCAGTCACCGTAGCACCACCAAA
GACCGAAGCACCGCCACCCACAGAAACACCCGAATGTGCCGATGTCAAGC
CGCAAGCATGCGCAGAAGCCAAAGAGAAAGAAACAAATCCTGTCAAATGG
GAAAGAAGATGTAataaaggaaaatttctattggaCAATTGCAAGAAGAC
ATGCGGACACTGTATGTGAAATACTCCATTTCTTTCCATTTCTGGTTTTG
TCGTCAGAGTTATTCTTGCTTCTTTCTACCTTAATGTATATTGGGTTTTT
GTTATAGATTGTCAtagtttgtattttcttcagtgcaTACAACTTCACTA
TATTCCATATCTGATTTGTTCGAGTTAGTCTTGTTTTTTTATAACGAGTG
AAGTTCTGAATAAAAATTAACCGTTTATTTTACATGATAATAAAAGAGTA
GATGACTTTTGCTGGTTTTATAATAAATGTTGTAATCTATAATCTTCTAT
AATGAATATTTTAGGTGATGGAGGCTCAGGTGGGTCTGGCCAAACTTCTG
AAGCACCTGTTAAAACCACCGAAGCCCCTGTTAAACCCACCGAAGCCCCT
GTCAAAACAACCGTAGCCCCTGTCAAAACAACCGAAGCCCCTGTCAAAAC
TACCGAAGCCCCTGTCAAAACTACCGAAATCCCTNGTTAAACCCACCGAA
GCCCCTGTCAAAACAACCGTAGCCCCTGTCAAAACAACCGAAGCCCCTGT
CAAAACTACCGAAGCCCCTGTCAAAACAACCGAAGCCCCTGTCAAAACTA
CCGAAATCCCCACCGAAAAGACGGAAGAACCTGCTGGATCTGGTAGTGGT
ATTGATAGCTTGATTGAAGAATGTACAAGTGATAACAAAGAACATTGCGA
ATGTGGTGAGGCACCATTCGAAACATACGTCTTCAAAATTGATACTCAAA
CAAGATGTTTTACTGTGTATCGGCCAGAGGGTTTTGAAGGTAAACCAGTA
CCAGTTGTTATTACAAGTCAGTGTTATGGCAAAGATAGATTGATGAGTAT
TGGAATGACGAATACAATGACTGGTGATAACGTTGCAGCTGCTCGGTATG
GATTTGCTCGGATCGGATTATCAACTCCAGATGGTGGTTGGACCTTTGGT
AATAATGGGATTGTCAATGATACTGTACGAATGCCTTGCTCCGAAGATGA
CAGCAAAGACATTGCTTATGTCAATAAGGTTTTCGAATATATCGACAGTC
ATCCTGATAAATTTGATGTCAACCGAATCTACACTGAAGGATTCTCTCAA
AACTCCATGTTCTCAGCTTATATTGGATTCTGCCATTCTGACAGGGTCAC
TGGTATCTGGCAAGGTGGTAGTGGACTTGCGTTTAAATCGGACGACGGAA
TCAATCTCCCTGGAAAGCAAGCCAAATGCTCTGCTATCTCGTATGCTGAG
GATGGCAGAAACTGTATCGAATGCACCGACTGCAAATACTGGCCTATCTA
TCCATGCTATCAACCAAAGAAGCCAATGATTGACTGCATTGCTGACTATA
ACAACGATTACATTGCATCATCGAGATCCAACTCTGAAACAGAATCGACC
ACATTGAATATGTACAACGTTGCCAAAGATGAAGGACACGATGCTCGAAT
GTTGAGATTCAAACCATCAGATGATGGCACCATCGCTGGTGGTCACAAGA
ATCCACGAAATACAGTTTACTGGCAAATGGGATGTTGGGGAATGACCGAG
AAATGTTCCTCAGAATGTGAAACCTCTTTCAAGACATGCGTCAATGGCAA
AGATGTGTCGAAAGCTGAAAACCGTGTAAACTCGTTTGAAGCTTGTATTG
AGAAAGATACCTTCAAAGATCTTTCTGGTTGTGATTCAACTTGCTCACCT
ACATTCGAGATGCTAAAACAAAGCGAAGTGCCGTACAAAGCGGAATTTGC
TTACGGAAAATTTGGTGGCAATGATGAAAGCGGATTAGCAAAACCAAGCA
CAAGTCAGTGTACCGCCGAGTGAAAATTGACCGCCACAAATATAGAAAAA
AAGCACTATGATAAAACACTATATGTAATGTTTTGCAATTTCACATTTTA
TAAGCAATTAGTCATTTCATTTATCATTTGTAAATCGAAAGAAGAGATTG
TAGAAGAAATTTAGCACATGCTTGCATAGTACACTCTATTCAACTCTTAT
TTTACAAGATTGGTCGCCTCTAAGAAAATCTAAATCACTTGATCTAGATC
TTCTGATGTAAGAGATTAATTTCCATAGTGCGAGATAAAGGAATTTTATA
GATTTTAATGAGAATCGCATTTCACGGAACACAACTAAAAACCACGAAAA
CTCTTTCCGCGAAAATTATTTAAggcaaaaatgaaaatcagttgacaaaa
gaaaaaatatatacctCAGATTTTGACTGGATTAGTTTGATTCCAAGTTC
ACAAAACCAATGGATTGTGTTTGAAAGCCAACAAATGCATCTTTGTTAAT
AATCGATAGatgatatttcaaaactatttattatttttcttaaagTATTT
Ctgtaaaaagaatgaaaatcatatcaaaaaatatttcatcc Coding sequence (CDS) from alignment at sc0000233:315487..320527+ >TCONS_00016355 ID=TCONS_00016355|Name=TCONS_00016355|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at sc0000233:315487..320527+ (Clytia hemisphaerica)
ATGAGTATTGGAATGACGAATACAATGACTGGTGATAACGTTGCAGCTGC
TCGGTATGGATTTGCTCGGATCGGATTATCAACTCCAGATGGTGGTTGGA
CCTTTGGTAATAATGGGATTGTCAATGATACTGTACGAATGCCTTGCTCC
GAAGATGACAGCAAAGACATTGCTTATGTCAATAAGGTTTTCGAATATAT
CGACAGTCATCCTGATAAATTTGATGTCAACCGAATCTACACTGAAGGAT
TCTCTCAAAACTCCATGTTCTCAGCTTATATTGGATTCTGCCATTCTGAC
AGGGTCACTGGTATCTGGCAAGGTGGTAGTGGACTTGCGTTTAAATCGGA
CGACGGAATCAATCTCCCTGGAAAGCAAGCCAAATGCTCTGCTATCTCGT
ATGCTGAGGATGGCAGAAACTGTATCGAATGCACCGACTGCAAATACTGG
CCTATCTATCCATGCTATCAACCAAAGAAGCCAATGATTGACTGCATTGC
TGACTATAACAACGATTACATTGCATCATCGAGATCCAACTCTGAAACAG
AATCGACCACATTGAATATGTACAACGTTGCCAAAGATGAAGGACACGAT
GCTCGAATGTTGAGATTCAAACCATCAGATGATGGCACCATCGCTGGTGG
TCACAAGAATCCACGAAATACAGTTTACTGGCAAATGGGATGTTGGGGAA
TGACCGAGAAATGTTCCTCAGAATGTGAAACCTCTTTCAAGACATGCGTC
AATGGCAAAGATGTGTCGAAAGCTGAAAACCGTGTAAACTCGTTTGAAGC
TTGTATTGAGAAAGATACCTTCAAAGATCTTTCTGGTTGTGATTCAACTT
GCTCACCTACATTCGAGATGCTAAAACAAAGCGAAGTGCCGTACAAAGCG
GAATTTGCTTACGGAAAATTTGGTGGCAATGATGAAAGCGGATTAGCAAA
ACCAAGCACAAGTCAGTGTACCGCCGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016355-exon-sc0000233-1491911889:315487..315849 | TCONS_00016355-exon-sc0000233-1491911889:315487..315849 | Clytia hemisphaerica | exon |
| TCONS_00016355-exon-sc0000233-1510915933:315487..315849 | TCONS_00016355-exon-sc0000233-1510915933:315487..315849 | Clytia hemisphaerica | exon |
| TCONS_00016355-exon-sc0000233-1575043694:315487..315849 | TCONS_00016355-exon-sc0000233-1575043694:315487..315849 | Clytia hemisphaerica | exon |
| TCONS_00016355-exon-sc0000233-1491911889:316063..316206 | TCONS_00016355-exon-sc0000233-1491911889:316063..316206 | Clytia hemisphaerica | exon |
| TCONS_00016355-exon-sc0000233-1510915933:316063..316206 | TCONS_00016355-exon-sc0000233-1510915933:316063..316206 | Clytia hemisphaerica | exon |
| TCONS_00016355-exon-sc0000233-1575043694:316063..316206 | TCONS_00016355-exon-sc0000233-1575043694:316063..316206 | Clytia hemisphaerica | exon |
| TCONS_00016355-exon-sc0000233-1491911889:317929..318147 | TCONS_00016355-exon-sc0000233-1491911889:317929..318147 | Clytia hemisphaerica | exon |
| TCONS_00016355-exon-sc0000233-1510915933:317929..318147 | TCONS_00016355-exon-sc0000233-1510915933:317929..318147 | Clytia hemisphaerica | exon |
| TCONS_00016355-exon-sc0000233-1575043694:317929..318147 | TCONS_00016355-exon-sc0000233-1575043694:317929..318147 | Clytia hemisphaerica | exon |
| TCONS_00016355-exon-sc0000233-1491911889:318451..320527 | TCONS_00016355-exon-sc0000233-1491911889:318451..320527 | Clytia hemisphaerica | exon |
| TCONS_00016355-exon-sc0000233-1510915933:318451..320527 | TCONS_00016355-exon-sc0000233-1510915933:318451..320527 | Clytia hemisphaerica | exon |
| TCONS_00016355-exon-sc0000233-1575043694:318451..320527 | TCONS_00016355-exon-sc0000233-1575043694:318451..320527 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000233 | supercontig | sc0000233:315487..320527 + |
Blast
The following BLAST results are available for this feature:
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