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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016351 ID=TCONS_00016351|Name=TCONS_00016351|organism=Clytia hemisphaerica|type=transcript|length=361bp
GAGATTGTCTTTATGAGAAAATTGAATGTAATTATCGCGCCCTTGGCTGT
CATGAAATGGTTGAGCGTGGTAAAATGAGGGAGCACCACAAGGAGAATGT
TGTTGAGCATCAATTGATGATGTTGGATGATTACAAAACCACAAAACATA
AGAATGAAGTGTTGGAAGGAAAACTGGaagaagcaaataaaagaatcgAC
CAATTGGAAGATCGGTTAAAACAGTCTGAAACCGAATGTATGAAGTTACA
TCAAAATACGTTTTCGATTGTTGATACAATTAGCTATTGgattaaatttc
attttcaacctAAAGAAGGTTCTGATGAAACATCAAAACGCTTGATCAAT
ACTCAAATTTG Run BLAST on NCBI protein sequence of TCONS_00016351-protein >TCONS_00016351-protein ID=TCONS_00016351-protein|Name=TCONS_00016351-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
DCLYEKIECNYRALGCHEMVERGKMREHHKENVVEHQLMMLDDYKTTKHK
NEVLEGKLEEANKRIDQLEDRLKQSETECMKLHQNTFSIVDTISYWIKFH
FQPKEGSDETSKRLINTQI Run BLAST on NCBI transcript from alignment at sc0000233:141737..151623+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016351 ID=TCONS_00016351|Name=TCONS_00016351|organism=Clytia hemisphaerica|type=transcript|length=9887bp|location=Sequence derived from alignment at sc0000233:141737..151623+ (Clytia hemisphaerica)
GAGATTGTCTTTATGAGAAAATTGAATGTAATTATCGCGCCCTTGGCTGT
CATGAAATGGTAAGAATACAGATATTTAGTACATACTCAAAACAGTAATA
TTTCCAGTCAATCCTGCATAATGGACGGATCCATAATTTACTGATTAGTA
GACCTTTACAAAACCACAGTTGGCTATAGAATATAAAAGATTTGTACGCG
ATTTGTTAGAGGATGACAGCCGCCTGGAAATTCACGCATTTTCCTAATCA
GAGCTGAGGACATTTTGGGTCAATCGAATCTTGTAACCAAAACAATTCTA
TCCAGATTCATCTGTTAACAACTTTTTTAAGTACAGTCAATTTTCTCTAG
CCCAAACCtgtattattcgaatttttctgtaattagaactgaaatattgg
tcccctcaggaGGACctaatttgaataaaatctttggtaccttgaagatc
gaattaaagagagttaACTGCAGTAACCATACCATTATTCAACAAGATTT
GCTTTCTCTTAAGAGGTTATTGAGACTCACTCTCCCACAATTTCGATCAT
TTCAGGTTGAGCGTGGTAAAATGAGGGAGCACCACAAGGAGAATTTTGTT
GAGCATCAATTGATGATGTTGGATGATTACAAAaccacaaaacaaaagaa
tgaagAGTTGGAAGGAAAACTGGaagaagcaaataaaagaatcgACCAAT
TGGAAGGTCGGCTAAAACAGTCTGAAACCGAATGTATGAAGTTACATCAA
AATACGTTTTCGATTGTTGATACAATTAGCTATTGGATTAGTTTTCATTT
TCAACCTAAAGAAGGTTCTGATGAAACATCAAAACGCTTGATCAATACTC
AAATTAATCATCTTTTTGACAAACACAAACAATTGGTTGCTAAACAAGGA
ATTCAGGATTTAGATGTACCTTTTAAGTTTATATCATACACCCGAGGTTT
GAAAAaccaagaaattttgaattataaTTGTATTGAGTTTAGCAATCTGT
TGAAAATCAACGAGTGGTGGACACCTGATCAAGGAAAAACTTTCTTTATG
AGAATCAACACATGGGGTAATTGCGATTTAAAATACATCGGGAGAAGAGA
ATTTAAAGAACTCagtgaaaagaaaagtaaagaaagAGGCTTTTATGATA
ACGGTAGCATCATGAGAAAGAAAACCTTTCAACCAAATTGCGAAATGATT
TGTTTGAGTCATGATAAAATAGAACCTGAAAATGCAGAGATGTGTTTGAT
CGGAAAAAAAGGAAGTTATATATTTCACGATGCAAACTTTTTTGAAGATC
TTGGTGATTGTTCGATCGCACATTACCAAAAAGAAAGTGGTTTGATTAGG
ATACAGGATTCAGGTTACTATTTAAGAATGTCTGATTATGTTTTGATAGT
TTTATACAATAATTAAAATCTGATTTAAAATCCTTTGTATTAACAACTAA
CTCCTAGTTGTATCTCAAAAagtgggatgagctggagtttttataaggta
cttcactaattggtcatatGAAGTAAtggagatgacgcgttctttagaaa
aagtaaaacaaattgtttttattacatgctaacgaccaaccaaatcaaat
aagagcctgtaaaaactccagcttgtcccccaAAATGTGGAAATTTTCAG
ATAAATATGAACCGgactattttttaaatttgttagcACCCATCacggaa
aaaatcaaaatgttataaaaaatacTGGCACCTTTTGTAACACGTTATAA
TTGCGGTTGTACTCGTACGAGTCTATCTTTGTCGATACTTTTTGGagatt
tgaatgaaaattggtacgctttttcttttaaatgaatttttctcatttag
atttttttcttttaaccgGGAAGATTGATTTGAAGTCCAAAAATCAGGTT
AAATTGACCTTCGATCTATAAGATTATCTTGAAACCTTTAAAACTAGTTT
TTAAGAGAACATTTTTACCAGAGAACAACtatattagcctggatatctaa
GCTCAAAATTTGTACCAAAGGGTATCTCAGGTTTAttgcttcgtagtaca
ctctgtgcacaTTGTctgtttaataaaaaaaatttccgtacggagacctc
tgcaaTGAAGTATGacttataaatagcaacacttctcttatcgtttcccc
tctctcaccaacacttctcttatcgtctcccctctctcaccaacactcca
tcgcagcggtcggtttgaaaaatctcaaatggtattcatgacgtaatgtt
ttacaCTATGGAAGCATACAAAAAAGCCCGGGCATTAACCACTAGTTtaa
ttgtttaaattcaaaactagTAGCAAACACCCGCTccttttgggtgcttc
cgtataaaacattacgtcatgaatatcaagaatataaTGAGTATCATGAT
TTTCTATTGTGCTTGTCTGAAAATACGTATTACTATTAGCTTTAAAGGGA
GAATGTTCTCCTTAAAGCTTTACTTTGAGACAACATACGATCTCGCCAAA
ATGGAAAAAGCATTTTTgaatacaaatttccaaaaataattgacattagc
ctccgtctcagaacgcggtcagaaaattttgcggataatgtcacagcgaa
aatgcatccagtgaaatgtgagtaatgtatcatgattcaagtcgactgaN
TCTCAATCTcagctataataaaactattacatgttagtagcagacccgac
tgaccaatgttatgtagcaggttggaacaagagtttctgctggaaagatg
cagtttgttttcaagttaaatcttcaaaataaaacaaactgtgtgggttt
ctttacttccaaaccacctaccaatagttttggaacactccataataaag
gaagatggctcttcttgtggattgactttctgATACCcgatataaacacg
atgtgacatgaaagtgaagagacatgatttgttggtttttgtttgatttg
ttgactcatatatctcatggcaaatgggataaaaatgactttttgtattt
cttggctctacatatgatacctgctagctctaactttgaacacctccaga
atgttgaaaaaagcattttacgagataagtttcaattataattttcatgg
aaatttttaatcgacagatttggcttggcgtNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttcctc
tgctttctgcttgaaaacgctgtcgtatagccgaaaacgaaagtgaaact
gtgaaaacgtccgcaaattcgggaccagtcctcttccgagacggaggcta
attgaatgataaaaatttttatataggGAAACAAAAAACTATCAGACTGT
CTTCATGTAAATTGTAATGTCAAATTGTAATTCAACTTGAGACACAAAAG
AATTTGTAATGCATAGCTAAATTAGTACAGCttccaaaaaaggcaaaaag
gctcggtattttaagaacagtccaCTCAAAATGCCGCGGTATTTTAGGCA
CGGACAAATAAATAGACGCAGTCGTTAAGGATTAAAATCTTAAAGAATCC
CTACCTAGTtcagaaagttcttataattaaaACCATATCCCCtcacttga
aataaaaagaaagccAGCTGAAAGAAATTTGAGCTCATACGactcaaagt
aaacaagtaagCAAAACTAAACGTATTCTTTTACAAATTTGTTATTTACG
AGTTTATCAAGTTTCTTGGTTTGATTGAGTGTATAGAGAAATTTTTACTT
AGATTAAATTCAACTGTCCAACTCAACTCTGAAAATGGCAGAAGGTCAAG
ATCCTCAAGCAGACCGTGGATATGATTTCGACCTTGTTAAGAAAGAACAA
GGCGCTGATTTCGAATGTACAATATGTCATTTGATTTTGCGTGACCCTTA
CTCAACACCGTGCAATCACGCTTTCTGTTACGTTTGTCTCACCCAATGGC
AACAAGAACAATTGAGTGGAAAAAGGTATCTGGAACCGTTTTTGTATCAT
ATATGTGCGCTTTTACTAAGCAATTGCTATTATGTATTACATACTAGGAT
TTAGAGCTCTAGATCTGTCAGGCCATCCTCATACAAAAAACATTCCTACT
TTTacataattttgaaataaaggTTGATATAATTATAAACATTTCGCAAT
TTCGTATCCCAAAAATTCCTCCTTTGTCTTTAAATCTCATTAAGTTGTAA
AATTCATACTTtcctttgattttcaaactaataTAAAGAGGTATATCATg
gctccatcacattcaccCCTTTACTGGAGAGGTGCAGATGACCTTTTAAG
AGATTGATTgtattaatttctttttaatattttagaccGGTAACGTGTCC
AAATTGTAATACTGTTTATAACCCAGAAAAGGTATGAATAATCTTTCAAA
AGGCTTTTTACTCCCCTGTTTAGATTCTTGATAATTCTCTTATATGAGCG
AAAATAGAAAAACACGTAAAACAGTTCCCCTAAAAGAATCGAATCCCTAG
GAGGAGGTAATGGGGAGGCACTCATTGTAAGCGACCTATCGTAgttgcgg
cccttaagggtaaaTTTTAGGCTTCTCAAAGTGCAATGAAAGGGTCTAGA
AAACGATTAGATCTCGAATACGAGTCCATCTAGGGAAAGAAAAATTGTAG
CCCTGTAAACAACATTCGCTAacgaaatattttcattatttctttaCTTG
CTATGTACTCTCATTTTTTAGATTCATCGCGAAGGAGTGATTGATCGAAT
GGTCAAAACGAGTCTAGATGTCAAGTGTAAAAGACATGAAATGGGCTGCA
AATGGCAAGGAAAAATTATTGATTATCAGGTTAGCTATTGATTGAATATA
AGTTTGgatatcaaaattataaaaaagcgaAAGTAAAaagtacaccccct
tctcacagttCCGCTggaaccccttcccactggaaagattggccaatata
tcgtccccggtgtaaaatgttctccatcatgacacaaatttgatgacgtc
acttaaaAAACGATGACTTCATCataaaatttccacctgtcggaaaaaaa
cccaaatatatggtttataaAAATGTGTTTCACAgacgaaccaataaaga
tatttagattctgtttgaagattccgAAAGATAAAagctgttctttaaca
taattgccacTTTAGCATTttcaataaagattttttttaaatctatgctg
aagataagaaattttttttttccaaatttatattgtcaatacctatcacg
tgtcaaaatttgaaaatgattgaataaatagttcaaaagttatcagcact
ttaaaattttgagttttaagcgattttagatgggttttatgtcatgtttc
acaataaagtcataaaacctgatcagGAAGACCTATGATCCTAAAATTTT
ACACAAGTACTCCTaataacattttattaaaagccagaaagtttcaagac
ggttaaaaaatttttctccgagatatacacaaaagaacTCCATCGTCGTA
GATTCAACCCCCTCTCCCCGCTTGGGGCTAATAGAGTTAAAGCCTTTTTT
GTCTTGATACGTAGCTACAGGTCATCCCAGActgtaaaaaagaaacaaaa
catgaTTTGGAATCACCCAAAGATAACCAACCCAGGTTTCAGTCCATTCA
GactatttttgaagtttctaaGGGAGTgttcagaaagtatctactagagg
aAGGGNTAACCAACCCAGGTTGCAGTCCATTCAGACTATTTTTGAAGTTT
CGAAGGGAGTgttcagaaagtatctactagagggaGGGGGGCTGAAGGAT
TTCAGGGGGGATCTAgccttttaaaaaaaagctgaaaatacaGTGCTTTT
AGCGAAgtggttgaaaattgaaatttttctcctgttgtcgcaaaccatgg
ttgcgcctccttaatCTCTGATAACATTATAACCTTTAAACCGAACTCAA
AATATTACTCCTGCTACATTAGGATATGATATATgccaagaaaaatttta
ctttaaaattcCATATGATTCAGACATTGAAAGCCTCATTTCTGGACAGA
ATCAGTCCAAAAAGAACTATGTTTGAAGGAAATCAggatttcaaaatcaa
ttttctcctgtcggcacAAACCATGGTCGCACCTCCTTCGTCACTAAATT
CTTTGTCCCTGTACGTTTGAAATCAAGCCACTTGCTGCCTTCTATATAAT
AATGTAGTCCTCCCTACATGAGTGCACAACATTTTGATATTGAGGCTTAG
GATCACTCACAATCTGGAAATTTACTGTTGTAGTTAAACCCGATTTATAT
GTGACAAGTCGCCCTAATCCAAAAGTAAGTATAACCCTCACCTTATTAAT
CAGTCAGTTAGAGTGTAGAGGTtctatttgattttttgaaataccctcca
ctcccccctagtagatactttctgaccactccctaacaCAGACAGACAGC
TCCCTAACACAGACAGACCACTCCCTAACGCAGACAGACAGCTCCCTAAC
ACAGACAGACCACTACCTAACACAGACAGACAGCTCCCTAACACAGACAG
ACCACTCCCTAACACAGACAGACAGCTCCCTAACACAGACAGACCACTCC
CTAACACAGACAGACAGCTCCCTAACACAGACagaaaataataagaaaat
gttACAATACTGCACCGTTTCAAACAAGAGCTTTCCCTTTTGTGTTTTAG
AGCAAataatgataaattttcagattaCACACTGTAGAAAGTTTTCCAAT
ATTCTTTTCACATTACAGGGCCATCATCAAATGAGATGTCAATATGAAAC
AGTGCCATGCGAAAACAAGGGCTGTTTGGTAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTTGAGCGTGGTAAA
ATGAGGGAGCACCACAAGGAGAATGTTGTTGAGCATCAATTGATGATGTT
GGATGATTACAAAACCACAAAACATAAGAATGAAGTGTTGGAAGGAAAAC
TGGaagaagcaaataaaagaatcgACCAATTGGAAGATCGGTTAAAACAG
TCTGAAACCGAATGTATGAAGTTACATCAAAATACGTTTTCGATTGTTGA
TACAATTAGCTATTGgattaaatttcattttcaacctAAAGAAGGTTCTG
ATGAAACATCAAAACGCTTGATCAATACTCAAATTTG Coding sequence (CDS) from alignment at sc0000233:141737..151623+ >TCONS_00016351 ID=TCONS_00016351|Name=TCONS_00016351|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at sc0000233:141737..151623+ (Clytia hemisphaerica)
GATTGTCTTTATGAGAAAATTGAATGTAATTATCGCGCCCTTGGCTGTCA
TGAAATGGTTGAGCGTGGTAAAATGAGGGAGCACCACAAGGAGAATGTTG
TTGAGCATCAATTGATGATGTTGGATGATTACAAAACCACAAAACATAAG
AATGAAGTGTTGGAAGGAAAACTGGaagaagcaaataaaagaatcgACCA
ATTGGAAGATCGGTTAAAACAGTCTGAAACCGAATGTATGAAGTTACATC
AAAATACGTTTTCGATTGTTGATACAATTAGCTATTGgattaaatttcat
tttcaacctAAAGAAGGTTCTGATGAAACATCAAAACGCTTGATCAATAC
TCAAATTGATTGTCTTTATGAGAAAATTGAATGTAATTATCGCGCCCTTG
GCTGTCATGAAATGGTTGAGCGTGGTAAAATGAGGGAGCACCACAAGGAG
AATGTTGTTGAGCATCAATTGATGATGTTGGATGATTACAAAACCACAAA
ACATAAGAATGAAGTGTTGGAAGGAAAACTGGaagaagcaaataaaagaa
tcgACCAATTGGAAGATCGGTTAAAACAGTCTGAAACCGAATGTATGAAG
TTACATCAAAATACGTTTTCGATTGTTGATACAATTAGCTATTGgattaa
atttcattttcaacctAAAGAAGGTTCTGATGAAACATCAAAACGCTTGA
TCAATACTCAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016351-exon-sc0000233-1491911889:141737..141795 | TCONS_00016351-exon-sc0000233-1491911889:141737..141795 | Clytia hemisphaerica | exon |
| TCONS_00016351-exon-sc0000233-1510915933:141737..141795 | TCONS_00016351-exon-sc0000233-1510915933:141737..141795 | Clytia hemisphaerica | exon |
| TCONS_00016351-exon-sc0000233-1575043694:141737..141795 | TCONS_00016351-exon-sc0000233-1575043694:141737..141795 | Clytia hemisphaerica | exon |
| TCONS_00016351-exon-sc0000233-1491911889:151322..151623 | TCONS_00016351-exon-sc0000233-1491911889:151322..151623 | Clytia hemisphaerica | exon |
| TCONS_00016351-exon-sc0000233-1510915933:151322..151623 | TCONS_00016351-exon-sc0000233-1510915933:151322..151623 | Clytia hemisphaerica | exon |
| TCONS_00016351-exon-sc0000233-1575043694:151322..151623 | TCONS_00016351-exon-sc0000233-1575043694:151322..151623 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000233 | supercontig | sc0000233:141737..151623 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013083 | Znf_RING/FYVE/PHD |
Blast
The following BLAST results are available for this feature:
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