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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016343 ID=TCONS_00016343|Name=TCONS_00016343|organism=Clytia hemisphaerica|type=transcript|length=2329bp
AAACCAGCATATATACAAAGTTTGCGGTCTCTCTCATATCATATCATTTC
GTATAAGACTTTATCAGAAGTTTATaagattatgacgtcatcatattGTC
AGATTTTTTTACTTAAGCAGGAAGGTTTTGCACCAAAGAAAATTATATAG
AGAAAAATATATCATGGAATGGAATCTCTATtgtaactcgaatgtctcaT
TAACTATAACAAGTTTTCTAGTACCctcatttgaaaatgttttataaaCC
TTAccaaccttactccataactcaaaatttccttaactcgaataaatttg
CGTCGAGAGTCCACGATACCAAATTTTCACGAATTTCTTTGTTATTTTCG
TTGTGTAAAACAATAAGCAAGCTCCTCGTGTGTatggaagaatattttca
aatgtttttgaatCTAAGAAAttatttacaaagatttttacaaaattaat
gATACCTAATGAGAATTGTTTTGCTTCATTTATTACATAGtttgttgaaa
ataatatttgaaatcGCATTTTCGACAACTCCGCCATATTCATTTCCCGG
CATCCTTTTCGTAAAATGTGTCTGATCGTGAGTAGCTCCGATTCTTGAAT
CCGAAACGGAATAAGCGTCAACAATCGGGATACCGTAACCCGATAAAATG
CGATCGGCTATCTGATTGAAATGTCTGACCCGATATGGGGAAGTGTTTTC
CCGCCAATTTTTAACGGCTCGATCCATTCTCCAAGGTAAACTGACTGTGT
TGACCCATATTACAACTTTCTTTTGAGCGATCAGTTTTTGAGCCGCGCGG
CCGTACGCATGCAATTTCTTTTCCANTTCTTTTGAGCGATCAGTTTTTGA
GCCGCGCGGCCGTACGCGTGCAATTTCTTTTCCATGAACTCACGATCAAG
GCTTTCACGTAAAACCCAATGGCCAAAGTTTAATAAAAATAGTTGGCTTT
TCAATGCTGTCTGAGagaaaggttttgaaaattttgaacgGCGAACTTTC
TGatgaatatatttttcgaaaggGAGACTGATATTGTGGAAGCTTAACGG
TAATCGCGTTCCACGTGCATCGAAAATCCACTCAATGCGGGGCGTCTTCT
CAAAAATCATTTGAATATGTGTTTTCACGCACGAAGTACACCCTCCGTAC
AAACGTGACGCCCAATGATACGCCCTGTAGCGCATGTGCGAATCTCCTGC
AAACACAATACTGTCCCAACCGTTCTTGGCAAAACATTTCTTCATTTCAT
CGTTGGTAAACGAATGATACTGACACGTGTAAGGTAACCAATGGAAACCG
TTGATTTTATCAAAGTCAAACTCCGCACTTTGCCAAGGTCCACATTGCTC
AACTTTTGGGAAAATAGCGCCGCATTTCACCCAACGTCCAGCCACTACCC
CACTTTCGTTTCGACTGCAGTACTTTGAATATCCTAACGGAGGACTTGAT
TGATTTCTATTCAGAACTAGTAATTCGAAAGGGCTTCCTCGTAGTTGCCT
TAGCAACGGGTTAACGTGGCGCCGCGTCTCTTCTCCCTGATGATGTACAT
ACGTCACAAAGACCATAGCGATATATTTGGTTGGGATGGTCAGAGTGATG
TTTACATAGTAAGTACCGTTCCCTTTGTAGACTATGGTCTGGCTGCTCAT
CTCGTAAATGCTGTACAACTGGACACGAAAAACGGAGCCTCCGTCCTGGT
CATCGAACGTGCATTCCATCTTTGGGCTCTTTTTGTATCGAATGTTGATC
TCAAACGGTTGCCACGGCAATACAGTGGCCGGTACATCAACAAAATATGC
ACAGTTATCAAATTTGATTTCTTGCTGGCTTTCAGTGTCATTTTGTAGTG
AAAAGAAGAAGTTTTGTAATTGTTGACTATCGGTTTTTTTGTTGGATTGT
TGAGCTCTGAAGATGATACACGTAATAACAAGCGCTAACAATGCGTAATG
TATGACCGATATTTTAACGGCTTTCGTGATGGTAATGTCGTTGATTTTGA
TCGATGTCTTTTCTTTGCCGTACAACATCTTGTGTCGTGAATTTCCTCat
tgaaatgtttttcttctccCTGTAGAGACTCACTTTGATCACCATCCTCA
AAATGAATATTCTTCCTTTCCATACTTTCTCACGTTCAGCATGAactgtt
tcttttgtttgacaTGTTCAAAAAGTCAGTTTCGTTTTCATCTACCCATT
GATATCCATTAAACTTTATATCTGCTGAAGTTTCAAATGGAAAGCTCAAT
CTTGTTCCACCCTATATCTAACCATAGCAGTTTATGATTGATTTTAACAC
agaaataaaaatgtcaacGTTAAAATATC Run BLAST on NCBI protein sequence of TCONS_00016343-protein >TCONS_00016343-protein ID=TCONS_00016343-protein|Name=TCONS_00016343-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
MLYGKEKTSIKINDITITKAVKISVIHYALLALVITCIIFRAQQSNKKTD
SQQLQNFFFSLQNDTESQQEIKFDNCAYFVDVPATVLPWQPFEINIRYKK
SPKMECTFDDQDGGSVFRVQLYSIYEMSSQTIVYKGNGTYYVNITLTIPT
KYIAMVFVTYVHHQGEETRRHVNPLLRQLRGSPFELLVLNRNQSSPPLGY
SKYCSRNESGVVAGRWVKCGAIFPKVEQCGPWQSAEFDFDKINGFHWLPY
TCQYHSFTNDEMKKCFAKNGWDSIVFAGDSHMRYRAYHWASRLYGGCTSC
VKTHIQMIFEKTPRIEWIFDARGTRLPLSFHNISLPFEKYIHQKVRRSKF
SKPFSQTALKSQLFLLNFGHWVLRESLDREFMEKKLHAYGRAAQKLIAQK
XWKRNCMRTAARLKN Run BLAST on NCBI transcript from alignment at sc0000232:357813..360141 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016343 ID=TCONS_00016343|Name=TCONS_00016343|organism=Clytia hemisphaerica|type=transcript|length=2329bp|location=Sequence derived from alignment at sc0000232:357813..360141 (Clytia hemisphaerica)
GATATTTTAACgttgacatttttatttctGTGTTAAAATCAATCATAAAC
TGCTATGGTTAGATATAGGGTGGAACAAGATTGAGCTTTCCATTTGAAAC
TTCAGCAGATATAAAGTTTAATGGATATCAATGGGTAGATGAAAACGAAA
CTGACTTTTTGAACAtgtcaaacaaaagaaacagtTCATGCTGAACGTGA
GAAAGTATGGAAAGGAAGAATATTCATTTTGAGGATGGTGATCAAAGTGA
GTCTCTACAGggagaagaaaaacatttcaatGAGGAAATTCACGACACAA
GATGTTGTACGGCAAAGAAAAGACATCGATCAAAATCAACGACATTACCA
TCACGAAAGCCGTTAAAATATCGGTCATACATTACGCATTGTTAGCGCTT
GTTATTACGTGTATCATCTTCAGAGCTCAACAATCCAACAAAAAAACCGA
TAGTCAACAATTACAAAACTTCTTCTTTTCACTACAAAATGACACTGAAA
GCCAGCAAGAAATCAAATTTGATAACTGTGCATATTTTGTTGATGTACCG
GCCACTGTATTGCCGTGGCAACCGTTTGAGATCAACATTCGATACAAAAA
GAGCCCAAAGATGGAATGCACGTTCGATGACCAGGACGGAGGCTCCGTTT
TTCGTGTCCAGTTGTACAGCATTTACGAGATGAGCAGCCAGACCATAGTC
TACAAAGGGAACGGTACTTACTATGTAAACATCACTCTGACCATCCCAAC
CAAATATATCGCTATGGTCTTTGTGACGTATGTACATCATCAGGGAGAAG
AGACGCGGCGCCACGTTAACCCGTTGCTAAGGCAACTACGAGGAAGCCCT
TTCGAATTACTAGTTCTGAATAGAAATCAATCAAGTCCTCCGTTAGGATA
TTCAAAGTACTGCAGTCGAAACGAAAGTGGGGTAGTGGCTGGACGTTGGG
TGAAATGCGGCGCTATTTTCCCAAAAGTTGAGCAATGTGGACCTTGGCAA
AGTGCGGAGTTTGACTTTGATAAAATCAACGGTTTCCATTGGTTACCTTA
CACGTGTCAGTATCATTCGTTTACCAACGATGAAATGAAGAAATGTTTTG
CCAAGAACGGTTGGGACAGTATTGTGTTTGCAGGAGATTCGCACATGCGC
TACAGGGCGTATCATTGGGCGTCACGTTTGTACGGAGGGTGTACTTCGTG
CGTGAAAACACATATTCAAATGATTTTTGAGAAGACGCCCCGCATTGAGT
GGATTTTCGATGCACGTGGAACGCGATTACCGTTAAGCTTCCACAATATC
AGTCTCcctttcgaaaaatatattcatCAGAAAGTTCGCcgttcaaaatt
ttcaaaacctttctCTCAGACAGCATTGAAAAGCCAACTATTTTTATTAA
ACTTTGGCCATTGGGTTTTACGTGAAAGCCTTGATCGTGAGTTCATGGAA
AAGAAATTGCACGCGTACGGCCGCGCGGCTCAAAAACTGATCGCTCAAAA
GAANTGGAAAAGAAATTGCATGCGTACGGCCGCGCGGCTCAAAAACTGAT
CGCTCAAAAGAAAGTTGTAATATGGGTCAACACAGTCAGTTTACCTTGGA
GAATGGATCGAGCCGTTAAAAATTGGCGGGAAAACACTTCCCCATATCGG
GTCAGACATTTCAATCAGATAGCCGATCGCATTTTATCGGGTTACGGTAT
CCCGATTGTTGACGCTTATTCCGTTTCGGATTCAAGAATCGGAGCTACTC
ACGATCAGACACATTTTACGAAAAGGATGCCGGGAAATGAATATGGCGGA
GTTGTCGAAAATGCgatttcaaatattattttcaacaaaCTATGTAATAA
ATGAAGCAAAACAATTCTCATTAGGTATcattaattttgtaaaaatcttt
gtaaataaTTTCTTAGattcaaaaacatttgaaaatattcttccatACAC
ACGAGGAGCTTGCTTATTGTTTTACACAACGAAAATAACAAAGAAATTCG
TGAAAATTTGGTATCGTGGACTCTCGACGcaaatttattcgagttaagga
aattttgagttatggagtaaggttggTAAGGtttataaaacattttcaaa
tgagGGTACTAGAAAACTTGTTATAGTTAAtgagacattcgagttacaAT
AGAGATTCCATTCCATGATATATTTTTCTCTATATAATTTTCTTTGGTGC
AAAACCTTCCTGCTTAAGTAAAAAAATCTGACaatatgatgacgtcataa
tcttATAAACTTCTGATAAAGTCTTATACGAAATGATATGATATGAGAGA
GACCGCAAACTTTGTATATATGCTGGTTT Coding sequence (CDS) from alignment at sc0000232:357813..360141 >TCONS_00016343 ID=TCONS_00016343|Name=TCONS_00016343|organism=Clytia hemisphaerica|type=CDS|length=1248bp|location=Sequence derived from alignment at sc0000232:357813..360141 (Clytia hemisphaerica)
ATGTTGTACGGCAAAGAAAAGACATCGATCAAAATCAACGACATTACCAT
CACGAAAGCCGTTAAAATATCGGTCATACATTACGCATTGTTAGCGCTTG
TTATTACGTGTATCATCTTCAGAGCTCAACAATCCAACAAAAAAACCGAT
AGTCAACAATTACAAAACTTCTTCTTTTCACTACAAAATGACACTGAAAG
CCAGCAAGAAATCAAATTTGATAACTGTGCATATTTTGTTGATGTACCGG
CCACTGTATTGCCGTGGCAACCGTTTGAGATCAACATTCGATACAAAAAG
AGCCCAAAGATGGAATGCACGTTCGATGACCAGGACGGAGGCTCCGTTTT
TCGTGTCCAGTTGTACAGCATTTACGAGATGAGCAGCCAGACCATAGTCT
ACAAAGGGAACGGTACTTACTATGTAAACATCACTCTGACCATCCCAACC
AAATATATCGCTATGGTCTTTGTGACGTATGTACATCATCAGGGAGAAGA
GACGCGGCGCCACGTTAACCCGTTGCTAAGGCAACTACGAGGAAGCCCTT
TCGAATTACTAGTTCTGAATAGAAATCAATCAAGTCCTCCGTTAGGATAT
TCAAAGTACTGCAGTCGAAACGAAAGTGGGGTAGTGGCTGGACGTTGGGT
GAAATGCGGCGCTATTTTCCCAAAAGTTGAGCAATGTGGACCTTGGCAAA
GTGCGGAGTTTGACTTTGATAAAATCAACGGTTTCCATTGGTTACCTTAC
ACGTGTCAGTATCATTCGTTTACCAACGATGAAATGAAGAAATGTTTTGC
CAAGAACGGTTGGGACAGTATTGTGTTTGCAGGAGATTCGCACATGCGCT
ACAGGGCGTATCATTGGGCGTCACGTTTGTACGGAGGGTGTACTTCGTGC
GTGAAAACACATATTCAAATGATTTTTGAGAAGACGCCCCGCATTGAGTG
GATTTTCGATGCACGTGGAACGCGATTACCGTTAAGCTTCCACAATATCA
GTCTCcctttcgaaaaatatattcatCAGAAAGTTCGCcgttcaaaattt
tcaaaacctttctCTCAGACAGCATTGAAAAGCCAACTATTTTTATTAAA
CTTTGGCCATTGGGTTTTACGTGAAAGCCTTGATCGTGAGTTCATGGAAA
AGAAATTGCACGCGTACGGCCGCGCGGCTCAAAAACTGATCGCTCAAAAG
AANTGGAAAAGAAATTGCATGCGTACGGCCGCGCGGCTCAAAAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016343-exon-sc0000232-1491911889:357813..360141 | TCONS_00016343-exon-sc0000232-1491911889:357813..360141 | Clytia hemisphaerica | exon |
| TCONS_00016343-exon-sc0000232-1510915933:357813..360141 | TCONS_00016343-exon-sc0000232-1510915933:357813..360141 | Clytia hemisphaerica | exon |
| TCONS_00016343-exon-sc0000232-1575043694:357813..360141 | TCONS_00016343-exon-sc0000232-1575043694:357813..360141 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000232 | supercontig | sc0000232:357813..360141 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR013783 | Ig-like_fold |
Blast
The following BLAST results are available for this feature:
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