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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016338 ID=TCONS_00016338|Name=TCONS_00016338|organism=Clytia hemisphaerica|type=transcript|length=1182bp
GTTTAATGTAAGGACAAAATAAATAACTATTTATGTGTTCAATTATGACT
TTAAAAGGAAAgtcagttttattaaaaaattgcaattatttATTTAGATA
GAAACTTATTGTAAGTCAATATGGACTAAGTAAATAACTATTTTATGTTA
AAGgaagaaagataaaagagaagataaaagaagataaaagaagataaaaa
aaagagaataaaaaaggAGGTATGTGTTTCAGAAGGTTAGCAGAAGTTCA
TATAAAGTAGGTTTGTCAGGATTATTTCTATTTATGTATTGAGTATGGTT
TATAGGATGGTGAGGAGTAGCTAAAGCTTTAGTAAACCAACTCTTTGAGA
GATTTCTCAGTCTATCTGTTATggaacaaatttttgcttcTGCATACATG
TCAGTTATTCTAGTCCATCTTGGTTTATTCAGGATGATTCTTAAagcttt
gttttgaattaaCTCTAGTCTGTTaagttgaaagtttgaaatggAGAAAG
AAGACATATGTGAGAGTATTCAAGTCGTGATCTTAAGAGACTTTTGTAAA
ACATAAGAAGTTTTTTCTTATCCATAGAATATTGATTTTTAAGAGTAGAT
AAAAAGTTAAGGATATGGTAGGATTTATTGATTTTATCTGTGATATGAGG
AATAAGATTTAACTTTTTGTCAATGGAAAGGCctagaaattttatttcat
ttgccTTTTTTAGTCTGGTGTTCCTAACCCAGATGGAGATCTTGCTTTGA
CCAAAATTAATgtgttttgttttatcaaaattcacTACCAGACCCCATTT
TTCGAACCATTCAAACAGTATTTCCACATATTCATCAAGGTGAGAATCAC
AAACTCTTTTGTATCTTTCCCATGACCCTAGATCGTCAGCAAACTGAGAT
ACTTTAATTTTACTATTAGGAGGTTTTTGTACATCAGACACAAAGATGGA
AAAAAGAATAGGAGAGAGACAGGAGCCTTGGGGGACTCCTGCTTTCAAAA
CAAAGGTGGAAGATTTGAAGTCATGATGTTGAATAAAAGCTTTTCGTTCA
GATAAATAACTATGTAAAATGTAGAGTAGATATTTAGGTAAACCAAAAGA
GTTTAATTTATATAGTAAAAGACTATGGTTGACTTTATCAAAAGCTTtct
caaaatcaacaaaaacagcaTGCATCCTTTCN Run BLAST on NCBI protein sequence of TCONS_00016338-protein >TCONS_00016338-protein ID=TCONS_00016338-protein|Name=TCONS_00016338-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
ERMHAVFVDFEKAFDKVNHSLLLYKLNSFGLPKYLLYILHSYLSERKAFI
QHHDFKSSTFVLKAGVPQGSCLSPILFSIFVSDVQKPPNSKIKVSQFADD
LGSWERYKRVCDSHLDEYVEILFEWFEKWGLVVNFDKTKHINFGQSKISI
WVRNTRLKKANEIKFLGLSIDKKLNLIPHITDKINKSYHILNFLSTLKNQ
YSMDKKKLLMFYKSLLRSRLEYSHICLLSPFQTFNLTD Run BLAST on NCBI transcript from alignment at sc0000232:197449..198630 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016338 ID=TCONS_00016338|Name=TCONS_00016338|organism=Clytia hemisphaerica|type=transcript|length=1182bp|location=Sequence derived from alignment at sc0000232:197449..198630 (Clytia hemisphaerica)
NGAAAGGATGCAtgctgtttttgttgattttgagaAAGCTTTTGATAAAG
TCAACCATAGTCTTTTACTATATAAATTAAACTCTTTTGGTTTACCTAAA
TATCTACTCTACATTTTACATAGTTATTTATCTGAACGAAAAGCTTTTAT
TCAACATCATGACTTCAAATCTTCCACCTTTGTTTTGAAAGCAGGAGTCC
CCCAAGGCTCCTGTCTCTCTCCTATTCTTTTTTCCATCTTTGTGTCTGAT
GTACAAAAACCTCCTAATAGTAAAATTAAAGTATCTCAGTTTGCTGACGA
TCTAGGGTCATGGGAAAGATACAAAAGAGTTTGTGATTCTCACCTTGATG
AATATGTGGAAATACTGTTTGAATGGTTCGAAAAATGGGGTCTGGTAgtg
aattttgataaaacaaaacacATTAATTTTGGTCAAAGCAAGATCTCCAT
CTGGGTTAGGAACACCAGACTAAAAAAggcaaatgaaataaaatttctag
GCCTTTCCATTGACAAAAAGTTAAATCTTATTCCTCATATCACAGATAAA
ATCAATAAATCCTACCATATCCTTAACTTTTTATCTACTCTTAAAAATCA
ATATTCTATGGATAAGAAAAAACTTCTTATGTTTTACAAAAGTCTCTTAA
GATCACGACTTGAATACTCTCACATATGTCTTCTTTCTccatttcaaact
ttcaacttAACAGACTAGAGttaattcaaaacaaagctTTAAGAATCATC
CTGAATAAACCAAGATGGACTAGAATAACTGACATGTATGCAgaagcaaa
aatttgttccATAACAGATAGACTGAGAAATCTCTCAAAGAGTTGGTTTA
CTAAAGCTTTAGCTACTCCTCACCATCCTATAAACCATACTCAATACATA
AATAGAAATAATCCTGACAAACCTACTTTATATGAACTTCTGCTAACCTT
CTGAAACACATACCTccttttttattctcttttttttatcttcttttatc
ttcttttatcttctcttttatctttcttcCTTTAACATAAAATAGTTATT
TACTTAGTCCATATTGACTTACAATAAGTTTCTATCTAAATaaataattg
caattttttaataaaactgacTTTCCTTTTAAAGTCATAATTGAACACAT
AAATAGTTATTTATTTTGTCCTTACATTAAAC Coding sequence (CDS) from alignment at sc0000232:197449..198630 >TCONS_00016338 ID=TCONS_00016338|Name=TCONS_00016338|organism=Clytia hemisphaerica|type=CDS|length=717bp|location=Sequence derived from alignment at sc0000232:197449..198630 (Clytia hemisphaerica)
GAAAGGATGCAtgctgtttttgttgattttgagaAAGCTTTTGATAAAGT
CAACCATAGTCTTTTACTATATAAATTAAACTCTTTTGGTTTACCTAAAT
ATCTACTCTACATTTTACATAGTTATTTATCTGAACGAAAAGCTTTTATT
CAACATCATGACTTCAAATCTTCCACCTTTGTTTTGAAAGCAGGAGTCCC
CCAAGGCTCCTGTCTCTCTCCTATTCTTTTTTCCATCTTTGTGTCTGATG
TACAAAAACCTCCTAATAGTAAAATTAAAGTATCTCAGTTTGCTGACGAT
CTAGGGTCATGGGAAAGATACAAAAGAGTTTGTGATTCTCACCTTGATGA
ATATGTGGAAATACTGTTTGAATGGTTCGAAAAATGGGGTCTGGTAgtga
attttgataaaacaaaacacATTAATTTTGGTCAAAGCAAGATCTCCATC
TGGGTTAGGAACACCAGACTAAAAAAggcaaatgaaataaaatttctagG
CCTTTCCATTGACAAAAAGTTAAATCTTATTCCTCATATCACAGATAAAA
TCAATAAATCCTACCATATCCTTAACTTTTTATCTACTCTTAAAAATCAA
TATTCTATGGATAAGAAAAAACTTCTTATGTTTTACAAAAGTCTCTTAAG
ATCACGACTTGAATACTCTCACATATGTCTTCTTTCTccatttcaaactt
tcaacttAACAGACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016338-exon-sc0000232-1491911889:197449..198630 | TCONS_00016338-exon-sc0000232-1491911889:197449..198630 | Clytia hemisphaerica | exon |
| TCONS_00016338-exon-sc0000232-1510915933:197449..198630 | TCONS_00016338-exon-sc0000232-1510915933:197449..198630 | Clytia hemisphaerica | exon |
| TCONS_00016338-exon-sc0000232-1575043694:197449..198630 | TCONS_00016338-exon-sc0000232-1575043694:197449..198630 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000232 | supercontig | sc0000232:197449..198630 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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