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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016320 ID=TCONS_00016320|Name=TCONS_00016320|organism=Clytia hemisphaerica|type=transcript|length=780bp
CTGACTTTTGCCAATAGCACTTTCGCTGAGCTGCCCTGACAGATTCGTTC
TTCCTTTttcagataaagaaaatggcaaCCGCAATCAACAACCTCATCTT
CTCGTTAGCTGTGGTGTTattttcgaccaatcaaattgaaGCGAGGCCGT
GGGTTCTACCTTCAGAAGCAGTTAGCAACGACTGTGAAATCGCTGGAGTG
ACCATCTTAGACGGTGACGTGTGGATTTCTGATGGTAACCCATGCTACGG
TTTGAAATGCAAGAAAGGGATATATTCGGCCGTTTATTTGTGTACCGATC
CCGATGGTGATGACCTTCAAACCACAACACCGAAACCAACCCCGACAACA
TCCCGGACAACGAAAACAATCCGAACAACAAAAACTACAAGAACAACAAC
ACATACACCGACTATACCAACCACAAGAAGATCGTCCACAGAAAGGACCT
ACCCGACACCTCCACCGATCAATCACAATGAAGAAGGGTCTGGGTTCCAT
TTAggagaaaacattcacaatgagaaaagaaaaatagtgGTTTTCGACGG
TTAACATATTGTAGTACATGTTGTTCGCATGTCGAAGGAGCTGGTTAGGA
GAGAGCTTCAAAGTAAAGCGCTTCGCTGGACGAAGTCAAATCCGTTAAAG
AGTACCACCACTagacatttttttagttttttatgtTACAGCCtgtagaa
aatatttatttcaacatATTGCAAAGGCTCAAGAATTTAAATATCGCGCT
TGTAAATATATTATTTATCTGAAATATGTT Run BLAST on NCBI protein sequence of TCONS_00016320-protein >TCONS_00016320-protein ID=TCONS_00016320-protein|Name=TCONS_00016320-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MATAINNLIFSLAVVLFSTNQIEARPWVLPSEAVSNDCEIAGVTILDGDV
WISDGNPCYGLKCKKGIYSAVYLCTDPDGDDLQTTTPKPTPTTSRTTKTI
RTTKTTRTTTHTPTIPTTRRSSTERTYPTPPPINHNEEGSGFHLGENIHN
EKRKIVVFDG Run BLAST on NCBI transcript from alignment at sc0000232:353785..354776- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016320 ID=TCONS_00016320|Name=TCONS_00016320|organism=Clytia hemisphaerica|type=transcript|length=992bp|location=Sequence derived from alignment at sc0000232:353785..354776- (Clytia hemisphaerica)
CTGACTTTTGCCAATAGCACTTTCGCTGAGCTGCCCTGACAGATTCGTTC
TTCCTTTTTCAGATAAAGAAAATGGCAACCGCAATCAACAACCTCATCTT
CTCGTTAGCTGTGGTGTTATTTTCGACCAATCAAATTGAAGCGAGGCCGT
GGGTTCTACCTTCAGAAGCAGTTAGCAACGACTGTGAAAGTAAGTACTTT
CATTTTCATATATTACATAAAGATTCTTTGACAACACTATCGTGCTTATA
AAATTTCACAAATGATATCTAAGATGTCATAAGCTACGCAGATTTACAGA
TTGTCTGTTTTCCACCTTTCTTTGAGAGGATATCGATATTCCTCCTCTGT
TCATCAAAACCTTCTTCAATAATTTACACCCTTATTTTCTTTTCCCAACA
GTCGCTGGAGTGACCATCTTAGACGGTGACGTGTGGATTTCTGATGGTAA
CCCATGCTACGGTTTGAAATGCAAGAAAGGGATATATTCGGCCGTTTATT
TGTGTACCGATCCCGATGGTGATGACCTTCAAACCACAACACCGAAACCA
ACCCCGACAACATCCCGGACAACGAAAACAATCCGAACAACAAAAACTAC
AAGAACAACAACACATACACCGACTATACCAACCACAAGAAGATCGTCCA
CAGAAAGGACCTACCCGACACCTCCACCGATCAATCACAATGAAGAAGGG
TCTGGGTTCCATTTAGGAGAAAACATTCACAATGAGAAAAGAAAAATAGT
GGTTTTCGACGGTTAACATATTGTAGTACATGTTGTTCGCATGTCGAAGG
AGCTGGTTAGGAGAGAGCTTCAAAGTAAAGCGCTTCGCTGGACGAAGTCA
AATCCGTTAAAGAGTACCACCACTAGACATTTTTTTAGTTTTTTATGTTA
CAGCCTGTAGAAAATATTTATTTCAACATATTGCAAAGGCTCAAGAATTT
AAATATCGCGCTTGTAAATATATTATTTATCTGAAATATGTT Coding sequence (CDS) from alignment at sc0000232:353785..354776- >TCONS_00016320 ID=TCONS_00016320|Name=TCONS_00016320|organism=Clytia hemisphaerica|type=CDS|length=966bp|location=Sequence derived from alignment at sc0000232:353785..354776- (Clytia hemisphaerica)
TCGCTGGAGTGACCATCTTAGACGGTGACGTGTGGATTTCTGATGGTAAC
CCATGCTACGGTTTGAAATGCAAGAAAGGGATATATTCGGCCGTTTATTT
GTGTACCGATCCCGATGGTGATGACCTTCAAACCACAACACCGAAACCAA
CCCCGACAACATCCCGGACAACGAAAACAATCCGAACAACAAAAACTACA
AGAACAACAACACATACACCGACTATACCAACCACAAGAAGATCGTCCAC
AGAAAGGACCTACCCGACACCTCCACCGATCAATCACAATGAAGAAGGGT
CTGGGTTCCATTTAGGAGAAAACATTCACAATGAGAAAAGAAAAATAGTG
GTTTTCGACGGTTAAATGGCAACCGCAATCAACAACCTCATCTTCTCGTT
AGCTGTGGTGTTATTTTCGACCAATCAAATTGAAGCGAGGCCGTGGGTTC
TACCTTCAGAAGCAGTTAGCAACGACTGTGAAATCGCTGGAGTGACCATC
TTAGACGGTGACGTGTGGATTTCTGATGGTAACCCATGCTACGGTTTGAA
ATGCAAGAAAGGGATATATTCGGCCGTTTATTTGTGTACCGATCCCGATG
GTGATGACCTTCAAACCACAACACCGAAACCAACCCCGACAACATCCCGG
ACAACGAAAACAATCCGAACAACAAAAACTACAAGAACAACAACACATAC
ACCGACTATACCAACCACAAGAAGATCGTCCACAGAAAGGACCTACCCGA
CACCTCCACCGATCAATCACAATGAAGAAGGGTCTGGGTTCCATTTAGGA
GAAAACATTCACAATGAGAAAAGAAAAATAGTGGTTTTCGACGGTTAAAT
GGCAACCGCAATCAACAACCTCATCTTCTCGTTAGCTGTGGTGTTATTTT
CGACCAATCAAATTGAAGCGAGGCCGTGGGTTCTACCTTCAGAAGCAGTT
AGCAACGACTGTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016320-exon-sc0000232-1575043694:354588..354776 | TCONS_00016320-exon-sc0000232-1575043694:354588..354776 | Clytia hemisphaerica | exon |
| TCONS_00016320-exon-sc0000232-1575043694:353785..354375 | TCONS_00016320-exon-sc0000232-1575043694:353785..354375 | Clytia hemisphaerica | exon |
| TCONS_00016320-exon-sc0000232-1510915933:354588..354776 | TCONS_00016320-exon-sc0000232-1510915933:354588..354776 | Clytia hemisphaerica | exon |
| TCONS_00016320-exon-sc0000232-1510915933:353785..354375 | TCONS_00016320-exon-sc0000232-1510915933:353785..354375 | Clytia hemisphaerica | exon |
| TCONS_00016320-exon-sc0000232-1491911889:354588..354776 | TCONS_00016320-exon-sc0000232-1491911889:354588..354776 | Clytia hemisphaerica | exon |
| TCONS_00016320-exon-sc0000232-1491911889:353785..354375 | TCONS_00016320-exon-sc0000232-1491911889:353785..354375 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000232 | supercontig | sc0000232:353785..354776 - |
Blast
The following BLAST results are available for this feature:
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