TCONS_00016319 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016319
Unique NameTCONS_00016319
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length995

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016319 ID=TCONS_00016319|Name=TCONS_00016319|organism=Clytia hemisphaerica|type=transcript|length=995bp
GATGAAATTGACAAAACTTTTGCTATTTTGTGGCTTCTTCGGGACAATCT
TAAGCGATCATTATTATTTTGTGCTACCAACCCTCCAAGCATCCCAGGAC
TGTGATGTCATGGGTACAATCATCAAAAATGGTAGCATGCTACCTTCAAG
AGACAATCCTTGTTTCGCTTTGAAATGTAAAGATGGTTCTGCCACCGCAA
TCTTCCTCTGTAAAGACGACCACTATGTAGGCCACACCGATGCCAATAAA
ACAGGTACTGGGGATAATAAACGAAGCATGAAGATTTTCTAAAAGAGACT
TCATTGGAAGTTTTCCTTTGTTTGGTGTATTGATTGATGTGGTACAATTT
CCTGATTTTATTTTATggtcattttcttttcttttctttttcaaaataat
aatatgtacaaattttgtcaaaagtctTTTAACAAAAgctgaaataaaac
aaaaacgaagTGTTCAAATGGGAGATGCTCCACatcttttcttaaaaatg
tTCATTGAGTCTTTTAGAAGGTGTctcttttatcaaaaataatcgTCCAA
CATAACGACTCTGTCACTGCATTTCGGGGTAATATATGTACAAAAATACC
CCTTCAAAATCGCTTGCCAGCGTTCTTTGAGTGGCGCCTCACCAGTTGTG
TACCCTGGTTTCCGCCTAAAGGTCATTGGTCAAATCAGGAGGCACCGGTG
CTTCGTGATTCCACAGATCGACATGTAACgccgaagaaaattttcttttt
acaaaaTAGTACACCATGATTTACCGGCTGGTATTCGCTCTGTACTTGAT
TCCGATTTTCCCGTTTGTTCGCCGCTGGATTCCAATTCGGTTTCGTTGTC
ATCCGTTTCGGGTTCGGAGTCACGTGGGTCGGTGAAATTGCAGATGTACT
TGCAAGGGACGTACGCAACATCTCCGTTCGGCGAACTGGTAAGAAAGAAA
GCAATATTTTGAAGCAAGTGATTGGGATCTTACTGGAAATTACTC
Run BLAST on NCBI

transcript from alignment at sc0000232:351258..352870-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016319 ID=TCONS_00016319|Name=TCONS_00016319|organism=Clytia hemisphaerica|type=transcript|length=1613bp|location=Sequence derived from alignment at sc0000232:351258..352870- (Clytia hemisphaerica)
GATGAAATTGACAAAACTTTTGCTATTTTGTGGCTTCTTCGGGACAATCT
TAAGCGATCATTATTATTTTGTGCTACCAACCCTCCAAGCATCCCAGGAC
TGTGATGGTAAGAATCCTTCCCTACGCTTTTTTAACACACATTTCCTAAG
ATATATGACTAAAAATTCATTTCAAACAAAAATTGCCATTTCAAGCAATA
CTTATTATGAAATGAGAATTTTCGACAAAAAATGTCCAATGTAGTAGTCT
TTTGACAGTTAGCTGATTTTGAAAATATTGAAAGTATCGCCCTCGATTAG
TGGGCTATCTACATAAAACTTGTAATTTATCGAATAAGGTTTCCCAGAAA
ATTGGGTACTCACTACTCTCTCAATTTCAGTCATGGGTACAATCATCAAA
AATGGTAGCATGCTACCTTCAAGAGACAATCCTTGTTTCGCTTTGAAATG
TAAAGATGGTTCTGCCACCGCAATCTTCCTCTGTAAAGACGACCACTATG
TAGGCCACACCGATGCCAATAAAACAGGTCAGTCGATATACTAATCTGAT
ATTCCGATGGTAGGTTGACGACGCTAAAGCTCTGAAGGAGCTGACTAATT
TGGTGAGGAAAGATAGTCCGCTTGGACCCGACAATCACCAAAAACGAGGG
CTGGGGTTGAGGCCTTCCACAACAAAATACTTGAAATCAAAATTCATGAT
CTAAACCTCCCTTATAAGAGAATTTGGATAATTTAAGAATTTTCAAAGTT
GAGAATCGATTTTATTAATCTTTTAAAGGATGCTAACGCTTACAGGGCCT
ATCAAATTTTCAATTCCAGGGGAAAATCGATACAAATCATGATGTTATTG
AAATTTTGTCTTCATTTTTCAGGTACTGGGGATAATAAACGAAGCATGAA
GATTTTCTAAAAGAGACTTCATTGGAAGTTTTCCTTTGTTTGGTGTATTG
ATTGATGTGGTACAATTTCCTGATTTTATTTTATGGTCATTTTCTTTTCT
TTTCTTTTTCAAAATAATAATATGTACAAATTTTGTCAAAAGTCTTTTAA
CAAAAGCTGAAATAAAACAAAAACGAAGTGTTCAAATGGGAGATGCTCCA
CATCTTTTCTTAAAAATGTTCATTGAGTCTTTTAGAAGGTGTCTCTTTTA
TCAAAAATAATCGTCCAACATAACGACTCTGTCACTGCATTTCGGGGTAA
TATATGTACAAAAATACCCCTTCAAAATCGCTTGCCAGCGTTCTTTGAGT
GGCGCCTCACCAGTTGTGTACCCTGGTTTCCGCCTAAAGGTCATTGGTCA
AATCAGGAGGCACCGGTGCTTCGTGATTCCACAGATCGACATGTAACGCC
GAAGAAAATTTTCTTTTTACAAAATAGTACACCATGATTTACCGGCTGGT
ATTCGCTCTGTACTTGATTCCGATTTTCCCGTTTGTTCGCCGCTGGATTC
CAATTCGGTTTCGTTGTCATCCGTTTCGGGTTCGGAGTCACGTGGGTCGG
TGAAATTGCAGATGTACTTGCAAGGGACGTACGCAACATCTCCGTTCGGC
GAACTGGTAAGAAAGAAAGCAATATTTTGAAGCAAGTGATTGGGATCTTA
CTGGAAATTACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009101XLOC_009101Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016319-exon-sc0000232-1575043694:352764..352870TCONS_00016319-exon-sc0000232-1575043694:352764..352870Clytia hemisphaericaexon
TCONS_00016319-exon-sc0000232-1575043694:352344..352490TCONS_00016319-exon-sc0000232-1575043694:352344..352490Clytia hemisphaericaexon
TCONS_00016319-exon-sc0000232-1575043694:351258..351998TCONS_00016319-exon-sc0000232-1575043694:351258..351998Clytia hemisphaericaexon
TCONS_00016319-exon-sc0000232-1510915933:352764..352870TCONS_00016319-exon-sc0000232-1510915933:352764..352870Clytia hemisphaericaexon
TCONS_00016319-exon-sc0000232-1510915933:352344..352490TCONS_00016319-exon-sc0000232-1510915933:352344..352490Clytia hemisphaericaexon
TCONS_00016319-exon-sc0000232-1510915933:351258..351998TCONS_00016319-exon-sc0000232-1510915933:351258..351998Clytia hemisphaericaexon
TCONS_00016319-exon-sc0000232-1491911889:352764..352870TCONS_00016319-exon-sc0000232-1491911889:352764..352870Clytia hemisphaericaexon
TCONS_00016319-exon-sc0000232-1491911889:352344..352490TCONS_00016319-exon-sc0000232-1491911889:352344..352490Clytia hemisphaericaexon
TCONS_00016319-exon-sc0000232-1491911889:351258..351998TCONS_00016319-exon-sc0000232-1491911889:351258..351998Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000232supercontigsc0000232:351258..352870 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.12772	0	0.152783	0	0.244696	0.0898923	0.0768933	0.171225	3.89736	4.60677	0.04882	0.100114	3.65596	3.50667	11.4827	13.7226	16.883	15.4502	6.3933	9.18156	10.0131	9.33436	0.115767	0	0.118105	0.32744
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016319 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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