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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016290 ID=TCONS_00016290|Name=TCONS_00016290|organism=Clytia hemisphaerica|type=transcript|length=1285bp
ttgtaatatCCACCTTACTGTTTTATTTTGACTTGATGAAAGGAGGAATG
ATACACAAACTGAAACGATAAGAAAAAGTGGATTTTATGTttgtttatga
aaatattttgtcttgTTTGGTCTTTTTGATGAAGTATGGATTGGTTAGAT
GAAATTACAAGTTCAAGAGCTTACGACGTATCTAACAGGCTTGTTCGGTC
CGTTGGAAAGCAATTCGGATATTTCGAAGAGAAAATCTACCAAAACGATC
CGTCATTAACAAAGACGTTGAAAGAAACGCGGGATTTTCGCGTCAGCAAA
CTTTCCGCTAAGAAATTTTCATTACTCGACCAAATCAAAATACATTATGA
CGATAATACGGAATGGTCTTATGGTCCGGATTGTGGTGACGATGATCCCC
GGGTACTCGTTATGGCGGAAGGGGAATATTTGATCCGGTGCACTCATGAG
ACCTTAATTGATCACGAATCAGCTGGGGCGGCGGTTGAGTTCGAAACCAA
CAAAGGGAGGATCGCCAAATTTGCGCCCTATGAAGACGAAAGTATTTGTT
TAGGGCGAGACGAAGATAAGAAAACAGTGATTGCTGATGAAGGCTATGAA
ATTGTCAGTTTGAAGATTGATCGCGGTGAATTGAAAGGCTCGGAACAACA
GCCCGTCCCTGAGGAAGAACTGAAGCTGGAACGACCTCAATCGTGGTACG
CTATTGTTTATTATGCCGAAAAAGAAGAGAATgatttggaaaatgaactt
ttgCTTGAAGGAATTGCTCCGTCTTTACCACCaggaaagaaagtgaaagt
tgAAAATCCTGAAGGAGACAAAATTGACGACTTACCGGGCAGTGGCGTAC
CGAGCGATAGCGAATCGGGTGGGGACAGATCAAATGATGAAGCGACTGTT
GAAACCGTATCTGACACTCCATTAAATGCTTCttcaaactcaaatttgga
cgtTGATCGCCAAATATCACAATCTTCCACCAGTCTTCGTCAACGAAAAA
TTAATACTACTTCATCAACCAATGGTGATGAAACATGTGACTCAAATATG
AATATCTCAACTCAAATTGATAAGGAAGAAGACTTACTGAACCAGCCAGT
AGATCAATCTGATGATACATCGCCGCCTGATGAGCATTCTGACGATTCCA
GTCAACTCGACGAAAGCTCTGGTGATTCGGATGATCCTATCGAAGACGAT
GACCTTGATTATTATTTCTTCTCCAACCAACTACAAGCCAAAAAAGCTTG
GATGAATGTCAAAGAACTGACACGCCAAAAACANG Run BLAST on NCBI protein sequence of TCONS_00016290-protein >TCONS_00016290-protein ID=TCONS_00016290-protein|Name=TCONS_00016290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
MDWLDEITSSRAYDVSNRLVRSVGKQFGYFEEKIYQNDPSLTKTLKETRD
FRVSKLSAKKFSLLDQIKIHYDDNTEWSYGPDCGDDDPRVLVMAEGEYLI
RCTHETLIDHESAGAAVEFETNKGRIAKFAPYEDESICLGRDEDKKTVIA
DEGYEIVSLKIDRGELKGSEQQPVPEEELKLERPQSWYAIVYYAEKEEND
LENELLLEGIAPSLPPGKKVKVENPEGDKIDDLPGSGVPSDSESGGDRSN
DEATVETVSDTPLNASSNSNLDVDRQISQSSTSLRQRKINTTSSTNGDET
CDSNMNISTQIDKEEDLLNQPVDQSDDTSPPDEHSDDSSQLDESSGDSDD
PIEDDDLDYYFFSNQLQAKKAWMNVKELTRQKX Run BLAST on NCBI transcript from alignment at sc0000232:57471..58924- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016290 ID=TCONS_00016290|Name=TCONS_00016290|organism=Clytia hemisphaerica|type=transcript|length=1454bp|location=Sequence derived from alignment at sc0000232:57471..58924- (Clytia hemisphaerica)
TTGTAATATCCACCTTACTGTTTTATTTTGACTTGATGAAAGGAGGAATG
ATACACAAACTGAAACGATAAGAAAAAGTGGATTTTATGTTTGTTTATGA
AAATATTTTGTCTTGTTTGGTCTTTTTGATGAAGTATGGATTGGTTAGAT
GAAATTACAAGTTCAAGAGCTTACGACGTATCTAACAGGTAAGGAAAAAT
ATGTTGTGTTAATCTCTTTGTACTTTCTCGGATACTCTAGCATATATCTA
TACTTAAGTCAACACTTTAACTTCGCCTTAGTAGTATTAAGTTATCATAA
AATTTGGCTTTGATCCAGTGAGAATCTTATTGTCTTAACTTATATCTCTA
TTTATAGGCTTGTTCGGTCCGTTGGAAAGCAATTCGGATATTTCGAAGAG
AAAATCTACCAAAACGATCCGTCATTAACAAAGACGTTGAAAGAAACGCG
GGATTTTCGCGTCAGCAAACTTTCCGCTAAGAAATTTTCATTACTCGACC
AAATCAAAATACATTATGACGATAATACGGAATGGTCTTATGGTCCGGAT
TGTGGTGACGATGATCCCCGGGTACTCGTTATGGCGGAAGGGGAATATTT
GATCCGGTGCACTCATGAGACCTTAATTGATCACGAATCAGCTGGGGCGG
CGGTTGAGTTCGAAACCAACAAAGGGAGGATCGCCAAATTTGCGCCCTAT
GAAGACGAAAGTATTTGTTTAGGGCGAGACGAAGATAAGAAAACAGTGAT
TGCTGATGAAGGCTATGAAATTGTCAGTTTGAAGATTGATCGCGGTGAAT
TGAAAGGCTCGGAACAACAGCCCGTCCCTGAGGAAGAACTGAAGCTGGAA
CGACCTCAATCGTGGTACGCTATTGTTTATTATGCCGAAAAAGAAGAGAA
TGATTTGGAAAATGAACTTTTGCTTGAAGGAATTGCTCCGTCTTTACCAC
CAGGAAAGAAAGTGAAAGTTGAAAATCCTGAAGGAGACAAAATTGACGAC
TTACCGGGCAGTGGCGTACCGAGCGATAGCGAATCGGGTGGGGACAGATC
AAATGATGAAGCGACTGTTGAAACCGTATCTGACACTCCATTAAATGCTT
CTTCAAACTCAAATTTGGACGTTGATCGCCAAATATCACAATCTTCCACC
AGTCTTCGTCAACGAAAAATTAATACTACTTCATCAACCAATGGTGATGA
AACATGTGACTCAAATATGAATATCTCAACTCAAATTGATAAGGAAGAAG
ACTTACTGAACCAGCCAGTAGATCAATCTGATGATACATCGCCGCCTGAT
GAGCATTCTGACGATTCCAGTCAACTCGACGAAAGCTCTGGTGATTCGGA
TGATCCTATCGAAGACGATGACCTTGATTATTATTTCTTCTCCAACCAAC
TACAAGCCAAAAAAGCTTGGATGAATGTCAAAGAACTGACACGCCAAAAA
CANG Coding sequence (CDS) from alignment at sc0000232:57471..58924- >TCONS_00016290 ID=TCONS_00016290|Name=TCONS_00016290|organism=Clytia hemisphaerica|type=CDS|length=2298bp|location=Sequence derived from alignment at sc0000232:57471..58924- (Clytia hemisphaerica)
GCTTGTTCGGTCCGTTGGAAAGCAATTCGGATATTTCGAAGAGAAAATCT
ACCAAAACGATCCGTCATTAACAAAGACGTTGAAAGAAACGCGGGATTTT
CGCGTCAGCAAACTTTCCGCTAAGAAATTTTCATTACTCGACCAAATCAA
AATACATTATGACGATAATACGGAATGGTCTTATGGTCCGGATTGTGGTG
ACGATGATCCCCGGGTACTCGTTATGGCGGAAGGGGAATATTTGATCCGG
TGCACTCATGAGACCTTAATTGATCACGAATCAGCTGGGGCGGCGGTTGA
GTTCGAAACCAACAAAGGGAGGATCGCCAAATTTGCGCCCTATGAAGACG
AAAGTATTTGTTTAGGGCGAGACGAAGATAAGAAAACAGTGATTGCTGAT
GAAGGCTATGAAATTGTCAGTTTGAAGATTGATCGCGGTGAATTGAAAGG
CTCGGAACAACAGCCCGTCCCTGAGGAAGAACTGAAGCTGGAACGACCTC
AATCGTGGTACGCTATTGTTTATTATGCCGAAAAAGAAGAGAATGATTTG
GAAAATGAACTTTTGCTTGAAGGAATTGCTCCGTCTTTACCACCAGGAAA
GAAAGTGAAAGTTGAAAATCCTGAAGGAGACAAAATTGACGACTTACCGG
GCAGTGGCGTACCGAGCGATAGCGAATCGGGTGGGGACAGATCAAATGAT
GAAGCGACTGTTGAAACCGTATCTGACACTCCATTAAATGCTTCTTCAAA
CTCAAATTTGGACGTTGATCGCCAAATATCACAATCTTCCACCAGTCTTC
GTCAACGAAAAATTAATACTACTTCATCAACCAATGGTGATGAAACATGT
GACTCAAATATGAATATCTCAACTCAAATTGATAAGGAAGAAGACTTACT
GAACCAGCCAGTAGATCAATCTGATGATACATCGCCGCCTGATGAGCATT
CTGACGATTCCAGTCAACTCGACGAAAGCTCTGGTGATTCGGATGATCCT
ATCGAAGACGATGACCTTGATTATTATTTCTTCTCCAACCAACTACAAGC
CAAAAAAGCTTGGATGAATGTCAAAGAACTGACACGCCAAAAACANATGG
ATTGGTTAGATGAAATTACAAGTTCAAGAGCTTACGACGTATCTAACAGG
CTTGTTCGGTCCGTTGGAAAGCAATTCGGATATTTCGAAGAGAAAATCTA
CCAAAACGATCCGTCATTAACAAAGACGTTGAAAGAAACGCGGGATTTTC
GCGTCAGCAAACTTTCCGCTAAGAAATTTTCATTACTCGACCAAATCAAA
ATACATTATGACGATAATACGGAATGGTCTTATGGTCCGGATTGTGGTGA
CGATGATCCCCGGGTACTCGTTATGGCGGAAGGGGAATATTTGATCCGGT
GCACTCATGAGACCTTAATTGATCACGAATCAGCTGGGGCGGCGGTTGAG
TTCGAAACCAACAAAGGGAGGATCGCCAAATTTGCGCCCTATGAAGACGA
AAGTATTTGTTTAGGGCGAGACGAAGATAAGAAAACAGTGATTGCTGATG
AAGGCTATGAAATTGTCAGTTTGAAGATTGATCGCGGTGAATTGAAAGGC
TCGGAACAACAGCCCGTCCCTGAGGAAGAACTGAAGCTGGAACGACCTCA
ATCGTGGTACGCTATTGTTTATTATGCCGAAAAAGAAGAGAATGATTTGG
AAAATGAACTTTTGCTTGAAGGAATTGCTCCGTCTTTACCACCAGGAAAG
AAAGTGAAAGTTGAAAATCCTGAAGGAGACAAAATTGACGACTTACCGGG
CAGTGGCGTACCGAGCGATAGCGAATCGGGTGGGGACAGATCAAATGATG
AAGCGACTGTTGAAACCGTATCTGACACTCCATTAAATGCTTCTTCAAAC
TCAAATTTGGACGTTGATCGCCAAATATCACAATCTTCCACCAGTCTTCG
TCAACGAAAAATTAATACTACTTCATCAACCAATGGTGATGAAACATGTG
ACTCAAATATGAATATCTCAACTCAAATTGATAAGGAAGAAGACTTACTG
AACCAGCCAGTAGATCAATCTGATGATACATCGCCGCCTGATGAGCATTC
TGACGATTCCAGTCAACTCGACGAAAGCTCTGGTGATTCGGATGATCCTA
TCGAAGACGATGACCTTGATTATTATTTCTTCTCCAACCAACTACAAGCC
AAAAAAGCTTGGATGAATGTCAAAGAACTGACACGCCAAAAACANATGGA
TTGGTTAGATGAAATTACAAGTTCAAGAGCTTACGACGTATCTAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016290-exon-sc0000232-1575043694:58737..58924 | TCONS_00016290-exon-sc0000232-1575043694:58737..58924 | Clytia hemisphaerica | exon |
| TCONS_00016290-exon-sc0000232-1575043694:57471..58567 | TCONS_00016290-exon-sc0000232-1575043694:57471..58567 | Clytia hemisphaerica | exon |
| TCONS_00016290-exon-sc0000232-1510915933:58737..58924 | TCONS_00016290-exon-sc0000232-1510915933:58737..58924 | Clytia hemisphaerica | exon |
| TCONS_00016290-exon-sc0000232-1510915933:57471..58567 | TCONS_00016290-exon-sc0000232-1510915933:57471..58567 | Clytia hemisphaerica | exon |
| TCONS_00016290-exon-sc0000232-1491911889:58737..58924 | TCONS_00016290-exon-sc0000232-1491911889:58737..58924 | Clytia hemisphaerica | exon |
| TCONS_00016290-exon-sc0000232-1491911889:57471..58567 | TCONS_00016290-exon-sc0000232-1491911889:57471..58567 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000232 | supercontig | sc0000232:57471..58924 - |
Blast
The following BLAST results are available for this feature:
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