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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016274 ID=TCONS_00016274|Name=TCONS_00016274|organism=Clytia hemisphaerica|type=transcript|length=3730bpRun BLAST on NCBI protein sequence of Ahr-b >TCONS_00016274-protein ID=TCONS_00016274-protein|Name=Ahr-b|organism=Clytia hemisphaerica|type=polypeptide|length=762bp MSNMTKLHESLVEECMNLSIENGSSIVKDFNVAKGKKKKTKTSNKKEKKPRun BLAST on NCBI transcript from alignment at sc0000232:383857..402163+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016274 ID=TCONS_00016274|Name=TCONS_00016274|organism=Clytia hemisphaerica|type=transcript|length=18307bp|location=Sequence derived from alignment at sc0000232:383857..402163+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000232:383857..402163+ >TCONS_00016274 ID=TCONS_00016274|Name=TCONS_00016274|organism=Clytia hemisphaerica|type=CDS|length=32046bp|location=Sequence derived from alignment at sc0000232:383857..402163+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016274 vs. Swiss-Prot (Human)
Match: AHR (Aryl hydrocarbon receptor OS=Homo sapiens GN=AHR PE=1 SV=2) HSP 1 Score: 249.595 bits (636), Expect = 7.603e-69 Identity = 136/369 (36.86%), Postives = 216/369 (58.54%), Query Frame = 3
Query: 468 NPSKRHRDRLNSELDNLAKLLPFPEDVIARLDKLSILRLSVSFLRNKNFFKGAVNDKKDSTANGKTEVTASKNDNRFN----HFLNKALDGFILVVTVDGEIFFASESVKDYLGYSQSSVLHQSLETFVHNDDKDELLLYIK-SISSKKIVELDENNQD---------LMDDDMFKKEHE------FIVRLKSVLNNGTSDMYKPFKITGRIRKLNMQQ------DIVNLKYALFATCTPARTSVSVLEIRMKSTLFCSKNRIDLSFLDLDARGKEYFGYSKKDIFGR-SSYVMVHRLDVQHVRCKHTEIVTCGKTSIGTFRLKNKNNEWNWLSGYGRVLYKNGKPDYMVTTNRVLSEEEGRAMMKLRD 1493
NPSKRHRDRLN+ELD LA LLPFP+DVI +LDKLS+LRLSVS+LR K+FF A+ G+ A+ N FL +AL+GF+LVVT D +F+AS +++DYLG+ QS V+HQS+ +H +D+ E + +++ + E + ++ + D E+ FI RL+ +L+N + + F+ G+++ L+ Q+ I+ + ALFA TP + S+LEIR K+ +F +K+++D + + DA+G+ GY++ ++ R S Y +H D+ + H ++ G++ + FRL KNN W W+ R+LYKNG+PDY++ T R L++EEG ++ R+
Sbjct: 34 NPSKRHRDRLNTELDRLASLLPFPQDVINKLDKLSVLRLSVSYLRAKSFFDVALKSSPTERNGGQDNCRAANFREGLNLQEGEFLLQALNGFVLVVTTDALVFYASSTIQDYLGFQQSDVIHQSVYELIHTEDRAEFQRQLHWALNPSQCTESGQGIEEATGLPQTVVCYNPDQIPPENSPLMERCFICRLRCLLDNSSGFLAMNFQ--GKLKYLHGQKKKGKDGSILPPQLALFAIATPLQPP-SILEIRTKNFIFRTKHKLDFTPIGCDAKGRIVLGYTEAELCTRGSGYQFIHAADMLYCAESHIRMIKTGESGMIVFRLLTKNNRWTWVQSNARLLYKNGRPDYIIVTQRPLTDEEGTEHLRKRN 399 The following BLAST results are available for this feature:
BLAST of TCONS_00016274 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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