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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016255 ID=TCONS_00016255|Name=TCONS_00016255|organism=Clytia hemisphaerica|type=transcript|length=1389bp
atgcattttcgctaaacgatatattttctgactgatttttttctcctcgc
attgctatctaactttcatcatcaggtaggtccattcagcatctagcttg
tttgtGATGCACCTGCTGGATGCCACGTACTGGGTGTTAAACAGGTTTTC
GCTCGAGTAGTTTCACTCGAGGCAAATTTTTAATGGGACTGACCTAAATC
ATCGGGGGTACCATGCTTCCCTAGCGGAACCTAAGAATTGGGCTGAAACC
ATGTGAAAACACCATATCTTGGAAACTGATTTAAATCAAAAAGGTTCATT
CAGCTACTATGTGAACAATTATAGTATGTGTAACaattgaaaatcttaaa
aagaaTTACTCCAAAGTGGAGAAAATAACATAATATCTGGAAATTCTTCC
TCTCAAATAAAaatctcaaataaaaaatttctcatgAAAAAAAATGTGAA
TGCTTCGAGTCATTTAAACAAGTAAATTTATTTAAACTGATGTATAAGTT
ATATCCAGAAAGATGCAAATTACCTTAGAGGGAACTTTTGgggtcgaaaa
aaaaatcaattcccacgaaaattagttttcTTCAGGTACCCATTTTATGG
GACGATATACCCTTTTGAAcactgaaaacagttactccataGTGGGGGTG
GAGATGATAAAGATTTTTCAACTTGGCAGTTACTCATCTTAGTGTCATTG
AGTAACTACGCGATCCCCCTATTTGAATCAATAATTCTTTCTTCTGTTAG
GTATAAACAAGATGGATGTAGTTGTCAACATATTACGTTCCATTCCTTTC
ATCAGAGGACCATATGATTATATAGCAAGCATTGAAACACACATGGATTA
TGAAGGTCAAAGGAAAGCAGAGAAGATTTATCAAGTTATTTTAACAGTGT
TTGGGATCGTTGGATTCATCTGGGGCTTTGCAATTCAACAATTATCTGCG
GCTGTTTATACCGTTCTTGCTGGCTTTGCTCTCTCTTGTTTGATTACATT
ACCACCTTGGTCATTCTTTCGACGAAATCCTTTGGAATGGATGCCTGATC
AAAGTGAAGTCAAAGAAAAGAGCAATAAGAAGACTCAATCGCAAGAATCC
AAGAAAAAGAAGTGATCTTCCTTTAAGCTCTTATCAATTTTATCATTATt
atgtaattttcatttttttatttatcattGATAAGATAAACTGGTAACGG
ACTTGATCTcgtatactttttattgctctACTTCcaagattcaaaataaa
ataaacattcTCAGTACTGCGTGCACCACAATCAATTTTCTCAAgttcta
ccgggtgcgccacaaaaaagtttctctctttaaaactgattttctagaaa
tctaagaattttaaaagagccattcctatttcattggaa Run BLAST on NCBI transcript from alignment at sc0000232:308181..312787+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016255 ID=TCONS_00016255|Name=TCONS_00016255|organism=Clytia hemisphaerica|type=transcript|length=4607bp|location=Sequence derived from alignment at sc0000232:308181..312787+ (Clytia hemisphaerica)
atgcattttcgctaaacgatatattttctgactgatttttttctcctcgc
attgctatctaactttcatcatcaggtaggtccattcagcatctagcttg
tttgtGATGCACCTGCTGGATGCCACGTACTGGGTGTTAAACAGGTTTTC
GCTCGAGTAGTTTCACTCGAGGCAAATTTTTAATGGGACTGACCTAAATC
ATCGGGGGTACCATGCTTCCCTAGCGGAACCTAAGAATTGGGCTGAAACC
ATGTGAAAACACCATATCTTGGAAACTGATTTAAATCAAAAAGGTTCATT
CAGCTACTATGTGAACAATTATAGTATGTGTAACaattgaaaatcttaaa
aagaaTTACTCCAAAGTGGAGAAAATAACATAATATCTGGAAATTCTTCC
TCTCAAATAAAaatctcaaataaaaaatttctcatgAAAAAAAATGTGAA
TGCTTCGAGTCATTTAAACAAGTAAATTTATTTAAACTGATGTATAAGTT
ATATCCAGAAAGATGCAAATTACCTTAGAGGGAACTTTTGgggtcgaaaa
aaaaatcaattcccacgaaaattagttttcTTCAGGTACCCATTTTATGG
GACGATATACCCTTTTGAAcactgaaaacagttactccataGTGGGGGTG
GAGATGATAAAGATTTTTCAACTTGGCAGTTACTCATCTTAGTGTCATTG
AGTAACTACGCGATCCCCCTATTTGAATCAATAATTCTTTCTTCTGTTAG
GTATAAACAAGATGGATGTAGTTGTCAACATATTACGTTCCATTCCTTTC
ATCAGAGGACCATATGATTATATAGCAAGCATTGAAACACACATGGTAAA
CCTTCGTTTTATTTCCTTCTTTCCTTTcgatgggcttttccagaaaaaat
tttacgtatcgaaccccctggatatcctactttattagtaaaaaccccct
ggatatccactcttaaaaacaTGCTCAACCTCTTGGATATCCTCTCTTtc
aaagatgcttacccctggatatcgtattttttacttgaaaagacacttta
cccccctggatatccgctcccttgtagatatttaaccccctggatatcca
cttttgaacaaaaatcgttaaccccctcgatatccgatatcctcaacagg
ggggcacggactatttctggaaaagcccaatcgtATTCAGTACTCATTAG
ATTAtgcatttgtttttcttttccagttttTAAGTTGTATCTTTCTCATC
TCTTTCCAGGATTATGAAGGTCAAAGGAAAGCAGAGAAGATTTATCAAGT
TATTTTAACAGTGTTTGGGGTGAGTTTGATCAGCTTTTAATACTGACATA
ATAATTATGCTAATTTGTAGGAGAGTTGgtatttattgatttttccaATT
AACTCGGacaatattcgattgtgttttcCATTTCCTCTAATATCCTCAAA
TAAGTTGCGAGTAAAATTACAAATGAGAAAAAGTTTTGATATAAATCGAA
TTAGATTGACGATCTTGTGTTCTTTGAAAAGATTATTGTGACGGAAATAT
TATCATANATCTTTCTCATCTCTTTCCAGGATTATGAAGGTCAAAGGAAA
GCAGAGAAGATTTATCAAGTTATTTTAACAGTGTTTGGGGTGAGTTTGAT
TAGCTTTTAATACTGACATAATAATTATGCTAATTTGTAGGGGAGTTGgt
atttattgatttttccaACAGAATTGGTGCTTCTTTAACTCGGacaatat
tcgattgtgttttcCATTTCCTCTAATATCCTCAAATAAGTTGCgagtaa
aattaaaaatgcgATTAACTTTTGATATAAATCGAATTAGATTGACGATC
TTGTGTTCTTTGAAAAGATTATTGTGACGGGAATATTATCATATTTAAaa
atcatagtgtcctccagggtttgttccctcaccaaattctagattttttt
aaattcccccccccctctttttttccccctattacttttcagtttttcag
ttttccccctcttttttgctttccccccagaaaattctgaaaatatcagt
tccccccatatacccatataaatttctcaaatttcaacctacATTACGGT
TTTTATGCCTAGtgaatttttcaatcatgatctaatcacatgatatcata
GAAGAACCTTTTTTAAAATCTGTAAAGTCGACCCGGGTCTGACATCTAGA
ACCAtctcttttgattgaatgaatattgaaaacattttcacaaTGCTGAA
TTGTGAGATTGAAAATTTACTGAAGTAAATTCATAGGATAATTCAAacag
aagttgattttttatctATTCTTCATTGCcaccttttttcaaaagttttt
cacagCATAACATCCCTCTCCGGATTATCTTTTCAAGAAACAAACACAAA
ATGGCTTAAAAACTTGCTCTAATGTTCCTTGGAATATACAAAAAACCAAG
TTATCCTTGAGAAATTAAAAAACAGGTGATTTTCCTggagaaataaaaaa
agcaattgcctttctttaagaaattttccttgagaaatacaagaAACAAG
CGATTTTTTTCTCGAGAATCAACAAAAGACAAGAATTTAGATATAAGACA
ATAAGTAagtgattttccttgaagaatacaAACAACCATAAATGAATTTC
CTTAGGAAATACAAAAAACGTTTCCCTTGAGAAATAAAGGAGCAAGCGAT
TTTCCTCGAAGGAGACAAGAAAACACAagtgattttccttgagttTATGG
TACTCATAAAAAGCtatctttctttaaaaatacaataaatcTGAAACGAA
TAACTAGTTTCCTTTAGCAAATTTGCCATCTTTCttgtcttgaaaaaaaa
atatataagtgAATTTCCTTTCTGTCTACTGGCTTTCTTGAGACACAAAA
AATGTAGTCATTTTGCCTGAGCAAGAAATACGTGATTTTCCCTAAGaaat
tcattttccttgagaattTATACAAAAAACAAGCGATTTTAATTTAGAAA
CAAGAAGTCATTAGTCAGTCATTAGTAAATTTGTTTtgggaaatacaaaa
aaagtaGTCATTTCTATTGAGTCAATCAATAATAATCTTATGatatcaac
ttgaaaaatacaagCAAACTTTTGACTTGTCTTAGGTAAAGCAAATAAAG
caaattattttgtaaatttcttcgggaaaattataaaaaccAACTAACTT
CTCTCGGAAAacgcaaaaaataaataaataattgcattagaaatattcaa
atcaaACGATCAATCGATTACTAGACTCGCCCAATTTCCATGTATAATAA
TTAGTGGTTTTCCTCAAAAAGGAAGGAAAAGTTGAGCAATTTTTTTGGGT
TGAAAATTTTCGGGTGTGGTTTTGTTTGTTGACATTTTTCTAATGCTCTT
ACTTTTTACAGGTGTAACGAATTTACAAGAAACTTTCACTAAAGATTAAT
TCTTAAATCTCGCACGAGtacaaaataatttattataTAGTCTTTTTTTT
ATTGCGTTTAGATCGTTGGATTCATCTGGGGCTTTGCAATTCAACAATTA
TCTGCGGCTGTTTATACCGTTCTTGCTGGCTTTGCTCTCTCTTGTTTGGT
AAGTTTCTACAATAGCTCATTCGTCTCCTCTTCTTCCcctttcatcaaaa
tttaaaacaccCCAGTGCCACAGACCCTTTAGACCTGCCCCACTGGAAGA
TTTGACCAAAATCTCGTCcttggtgggaaaaataccctacaatttcatcc
ccactgtgggagaaagttccaccggggctgtgagacaggagcgtatttta
aagaaaatacaaaCGAATTCAGTGTATGTAATTTGTGTGTGGAGGttatt
acacccccttctcacagacacaCTGGGAACTCTTctcactgaaaaaattg
gcaaaaatatcgtccccagtggaaaattatactctaatatttgtccccgc
tgaaaataaccagataagcaaaccctcactgcaaaatattgtgctaattc
ttccatccccactgaaagtccccagccataaaaaatatgggaatatcaat
cacgagttttggtccgttatttttacccccattggctacgaaatcccacc
gggtctgtgagaagggggtgtgttaTTGAACATAGAACCCATATAGAATT
TTGACGTAAGACTGTCTTCAATTACACGGGTTGTGGTGATGAAGTATATT
TCTCTTGTAGATTACATTACCACCTTGGTCATTCTTTCGACGAAATCCTT
TGGAATGGATGCCTGATCAAAGTGAAGTCAAAGAAAAGAGCAATAAGAAG
ACTCAATCGCAAGAATCCAAGAAAAAGAAGTGATCTTCCTTTAAGCTCTT
ATCAATTTTATCATTATtatgtaattttcatttttttatttatcattGAT
AAGATAAACTGGTAACGGACTTGATCTcgtatactttttattgctctACT
TCcaagattcaaaataaaataaacattcTCAGTACTGCGTGCACCACAAT
CAATTTTCTCAAgttctaccgggtgcgccacaaaaaagtttctctcttta
aaactgattttctagaaatctaagaattttaaaagagccattcctatttc
attggaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016255-exon-sc0000232-1491911889:308181..309025 | TCONS_00016255-exon-sc0000232-1491911889:308181..309025 | Clytia hemisphaerica | exon |
| TCONS_00016255-exon-sc0000232-1510915933:308181..309025 | TCONS_00016255-exon-sc0000232-1510915933:308181..309025 | Clytia hemisphaerica | exon |
| TCONS_00016255-exon-sc0000232-1575043694:308181..309025 | TCONS_00016255-exon-sc0000232-1575043694:308181..309025 | Clytia hemisphaerica | exon |
| TCONS_00016255-exon-sc0000232-1491911889:309760..309819 | TCONS_00016255-exon-sc0000232-1491911889:309760..309819 | Clytia hemisphaerica | exon |
| TCONS_00016255-exon-sc0000232-1510915933:309760..309819 | TCONS_00016255-exon-sc0000232-1510915933:309760..309819 | Clytia hemisphaerica | exon |
| TCONS_00016255-exon-sc0000232-1575043694:309760..309819 | TCONS_00016255-exon-sc0000232-1575043694:309760..309819 | Clytia hemisphaerica | exon |
| TCONS_00016255-exon-sc0000232-1491911889:311692..311778 | TCONS_00016255-exon-sc0000232-1491911889:311692..311778 | Clytia hemisphaerica | exon |
| TCONS_00016255-exon-sc0000232-1510915933:311692..311778 | TCONS_00016255-exon-sc0000232-1510915933:311692..311778 | Clytia hemisphaerica | exon |
| TCONS_00016255-exon-sc0000232-1575043694:311692..311778 | TCONS_00016255-exon-sc0000232-1575043694:311692..311778 | Clytia hemisphaerica | exon |
| TCONS_00016255-exon-sc0000232-1491911889:312391..312787 | TCONS_00016255-exon-sc0000232-1491911889:312391..312787 | Clytia hemisphaerica | exon |
| TCONS_00016255-exon-sc0000232-1510915933:312391..312787 | TCONS_00016255-exon-sc0000232-1510915933:312391..312787 | Clytia hemisphaerica | exon |
| TCONS_00016255-exon-sc0000232-1575043694:312391..312787 | TCONS_00016255-exon-sc0000232-1575043694:312391..312787 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000232 | supercontig | sc0000232:308181..312787 + |
Blast
BLAST of TCONS_00016255 vs. Swiss-Prot (Human)
Match: SPCS1 (Signal peptidase complex subunit 1 OS=Homo sapiens GN=SPCS1 PE=1 SV=4) HSP 1 Score: 95.1301 bits (235), Expect = 2.368e-23 Identity = 40/80 (50.00%), Postives = 60/80 (75.00%), Query Frame = 3
Query: 816 DYIASIETHMDYEGQRKAEKIYQVILTVFGIVGFIWGFAIQQLSAAVYTVLAGFALSCLITLPPWSFFRRNPLEWMPDQS 1055
++++S+ T MDY+GQ+ AE+++Q I+ IVGFI+G+ +Q VY V+AGFA SCL+TLPPW +RR+PL+W+P Q
Sbjct: 3 EHLSSLPTQMDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIYRRHPLKWLPVQE 82
The following BLAST results are available for this feature:
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