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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016233 ID=TCONS_00016233|Name=TCONS_00016233|organism=Clytia hemisphaerica|type=transcript|length=1892bp
tttaggtcatactaagaaaaataaaaatattaaaaaaattgaaaaatata
taaataatgtGCATTGAACAAACAATTGGATTGTCTTGACTGgactaata
aaaaaaacaaccctgatatggttttgattttttggcgGCAATGGGTTGTT
GTCGATTTTTCAgaagaaggagaaggagaagacCAAACTCATCCTCATCT
GTCGAAGAAACGGAACTGAATGGCGTCACACAATCACACAACCCACCAAG
AACTGCCGAAAATGAAGATCCTAGACTTGTCGACTTTCAAAAAGAAACTG
AACCCTGGAAATTGAGTTTAAATCAAATTGACAGGATATGTGACCCACTC
AACAGAGAAAGCAGAATTCCGAATTGGAGGCGCTTAGCAGAAAAGCTTTG
TAACGACGACCCTAAAAAATCTACAAGCCTGAAAGCTCATTTGGACCTTA
AAGGTGGCCCGAATCGGGGTCTACTTCTATTAAAAAAACTCAATACTAAA
GATCCCAGTATTAGAATAGATCAGATTAAACAAGTTGCCGACGAGCTTAA
ACGAAATGATATCGTATTGCGGCTTTCTGAAGATCAATTTCAAGATAACC
CTTTCTTAAGTAACTTAACAATCATATCAAACATCTACATCGCCGAACTA
TTAAACAGTGGCCCTCAAAATGGAAGATGGGatctttttgctgaaaaatt
ccATCTTCGTAAGACggaaataatgaaaatacaaaatgaGCCGCGTAACC
CTGATTATAAAGGACCCGCACAACAATTATTCATGAATACAATGCGTGAA
GCTGGACGGACACTTTATGAATTGAAACAAATCATGAGGGAAATAAAACG
AAATGATCTCGTTATAGAAATTAATAACATCTCAAAAGAAGAACTCGATG
GAACATTAAGAGAAAATTCAGCTGAAGAAACTAGTAATGTTGATACAGAT
TCGGTTTAAAACGCGGACTGCCAATCACAGTAGAGTAACAATAACTCGAG
CCCGTATGATCAACACAAATTGTTCGAGCTATGAAGCAAGGTTATAAGGT
AttgtcgagttatagaggttccatTTATAGAGGGACTCTACGGTATCTAC
AAATACTATGCGTGGAACTATTGACCCGAAACTTCTGGACGGgaaatgaa
gctacttatttcccatgtGTGACCCGCttgttttttacacaaacgcttga
ttgaaagtaaaacctaTCGCcaggatttcgaaaaatatgccgcTTTAAAC
GTCACAATGAAGATCCAATCCGTCATTCTAAATGCGCggcgcaaatctta
aggcttcactttttcttgccggttgaagattcatctctagcccattcggg
gctttaaactcaatatgCGTGGAACGCAACCTGGACcttgaagaaatgaa
aaaaaggttGAGCTcttccgcgaaattttaagattttgaaatttcgctGA
TGACACTATcgggagacaatattttcatgatTCTGTGTCTTTTTATGCCA
AATCACGCATGTTGGTTGTCGAAATACGTGtctctttgatgccagtaaac
attacAAAAGTAGTTACATTTTCGAGTTTATCtcaaatatttcgcggata
aggcctttcgaaatttccattgggacctaatttcgcggatgacacccgaa
tccgcgaaatttaatccctgggAAAATTCATTCCATTAAAGTAGCTAGCT
ATACTAATAACATACTAATTTATAAGACCCAGCACACAACCTTTTGTAGT
AAAATTTGTCCAAGTTTTGATACATTTCTATTTTATAGACATATACAagt
attgtaaatatttttaatttttaattttaattttttaatcaatagaaaat
gACATTAGATGCGGGTAAGGGCCCTCCTTAATTAGTGGCAGG Run BLAST on NCBI protein sequence of TCONS_00016233-protein >TCONS_00016233-protein ID=TCONS_00016233-protein|Name=TCONS_00016233-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MGCCRFFRRRRRRRPNSSSSVEETELNGVTQSHNPPRTAENEDPRLVDFQ
KETEPWKLSLNQIDRICDPLNRESRIPNWRRLAEKLCNDDPKKSTSLKAH
LDLKGGPNRGLLLLKKLNTKDPSIRIDQIKQVADELKRNDIVLRLSEDQF
QDNPFLSNLTIISNIYIAELLNSGPQNGRWDLFAEKFHLRKTEIMKIQNE
PRNPDYKGPAQQLFMNTMREAGRTLYELKQIMREIKRNDLVIEINNISKE
ELDGTLRENSAEETSNVDTDSV Run BLAST on NCBI transcript from alignment at sc0000231:389816..392651- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016233 ID=TCONS_00016233|Name=TCONS_00016233|organism=Clytia hemisphaerica|type=transcript|length=2836bp|location=Sequence derived from alignment at sc0000231:389816..392651- (Clytia hemisphaerica)
TTTAGGTCATACTAAGAAAAATAAAAATATTAAAAAAATTGAAAAATATA
TAAATAATGTGCATTGAACAAACAATTGGATTGTCTTGACTGGACTAATA
AAAAAAACAACCCTGATATGGTTTTGATTTTTTGGCGGCAATGGGTTGTT
GTCGATTTTTCAGGTAAAATTAAAGTCAATTTTCAAATTTGAGACCTCAG
ATGTTCTTAACTTTTTGAGTTTGAAGCCTTGAAATGTTCTTAAAATGTTC
TTACTTTTACAGTTTTGTGAGCACTTTTGTCCCTTTTCCTAAGAAATTGG
TTCAGCAAAGCCTTGAAATGTTCTTAGCTTGTTCTTAATATTTTGGCCAT
CGAAACCCTATATTCTTATATATTTTGTTTTTGTTCATGTATTCAACTGT
TTGCCTAGTGTTCTAGTTTTTTTTGGGGTCAAAAAAGAATCTTTGTGAAT
AAAAGTCATTATTTATAAGCACACAATTATTAGTACATTGTATAAGCACA
CAATTACTAATATTTTGAGAATTTGTCTGAAATTGCTTCATGAACTTTGA
TCATGCCAATTTATATCCATGCAGGGGGTTGGACGAACATTTTACCCTCA
AAAACGTGTACTGTAGTGTCTCCATAACTCGAACACGTACGGGGAGTGCA
GATTTGGTCGAGTTATAGAGTAAGGTTTATAAGGTATTGTTAACTGAAAG
GACCATAAAACTTTTTCGAGTTAAGATGACATTCGAGTTGTAGAGGTTCG
AGTTAAAGAGATTCTGCTGTATTATCACAACACCTTAATCTCTTTTTTTC
TCATTATCTTGTAGAAGAAGGAGAAGGAGAAGACCAAACTCATCCTCATC
TGTCGAAGAAACGGAACTGAATGGCGTCACACAATCACACAACCCACCAA
GAACTGCCGAAAATGAAGATCCTAGACTTGTCGACTTTCAAAAAGAAACT
GGTATTTTTCTCAGTTCTTTCTTAGTTTTTTTGTTATCTGGTAATTTGTG
CAGATACAAACAAGGCCGTTGATTTCCATTATTAATAGGTAGCTGTCGAT
TTTACCGGTTTTTAAGGGTCTCCTAAACGGGAATTATAGCCGAACAAGTC
TTCTTTTAAATCCTTGACCTTTGATTAGTTAGGAAACCGTAATTTTATAG
AGTGAGAGTGGTCAAAATTTCAAAATATATGAATTTAAGAATCAGGCAAT
TACAAGAATTGATGTAGGAAATTAAAGAATTGTTTATATTTCAGAACCCT
GGAAATTGAGTTTAAATCAAATTGACAGGATATGTGACCCACTCAACAGA
GAAAGCAGAATTCCGAATTGGAGGCGCTTAGCAGAAAAGCTTTGTAACGA
CGACCCTAAAAAATCTACAAGCCTGAAAGCTCATTTGGACCTTAAAGGTG
GCCCGAATCGGGGTCTACTTCTATTAAAAAAACTCAATACTAAAGATCCC
AGTATTAGAATAGATCAGATTAAACAAGTTGCCGACGAGCTTAAACGAAA
TGATATCGTATTGCGGCTTTCTGAAGATCAATTTCAAGATAACCCTTTCT
TAAGTAACTTAACAATCATATCAAACATCTACATCGCCGAACTATTAAAC
AGTGGCCCTCAAAATGGAAGATGGGATCTTTTTGCTGAAAAATTCCATCT
TCGTAAGACGGAAATAATGAAAATACAAAATGAGCCGCGTAACCCTGATT
ATAAAGGACCCGCACAACAATTATTCATGAATACAATGCGTGAAGCTGGA
CGGACACTTTATGAATTGAAACAAATCATGAGGGAAATAAAACGAAATGA
TCTCGTTATAGAAATTAATAACATCTCAAAAGAAGAACTCGATGGAACAT
TAAGAGAAAATTCAGCTGAAGAAACTAGTAATGTTGATACAGATTCGGTT
TAAAACGCGGACTGCCAATCACAGTAGAGTAACAATAACTCGAGCCCGTA
TGATCAACACAAATTGTTCGAGCTATGAAGCAAGGTTATAAGGTATTGTC
GAGTTATAGAGGTTCCATTTATAGAGGGACTCTACGGTATCTACAAATAC
TATGCGTGGAACTATTGACCCGAAACTTCTGGACGGGAAATGAAGCTACT
TATTTCCCATGTGTGACCCGCTTGTTTTTTACACAAACGCTTGATTGAAA
GTAAAACCTATCGCCAGGATTTCGAAAAATATGCCGCTTTAAACGTCACA
ATGAAGATCCAATCCGTCATTCTAAATGCGCGGCGCAAATCTTAAGGCTT
CACTTTTTCTTGCCGGTTGAAGATTCATCTCTAGCCCATTCGGGGCTTTA
AACTCAATATGCGTGGAACGCAACCTGGACCTTGAAGAAATGAAAAAAAG
GTTGAGCTCTTCCGCGAAATTTTAAGATTTTGAAATTTCGCTGATGACAC
TATCGGGAGACAATATTTTCATGATTCTGTGTCTTTTTATGCCAAATCAC
GCATGTTGGTTGTCGAAATACGTGTCTCTTTGATGCCAGTAAACATTACA
AAAGTAGTTACATTTTCGAGTTTATCTCAAATATTTCGCGGATAAGGCCT
TTCGAAATTTCCATTGGGACCTAATTTCGCGGATGACACCCGAATCCGCG
AAATTTAATCCCTGGGAAAATTCATTCCATTAAAGTAGCTAGCTATACTA
ATAACATACTAATTTATAAGACCCAGCACACAACCTTTTGTAGTAAAATT
TGTCCAAGTTTTGATACATTTCTATTTTATAGACATATACAAGTATTGTA
AATATTTTTAATTTTTAATTTTAATTTTTTAATCAATAGAAAATGACATT
AGATGCGGGTAAGGGCCCTCCTTAATTAGTGGCAGG Coding sequence (CDS) from alignment at sc0000231:389816..392651- >TCONS_00016233 ID=TCONS_00016233|Name=TCONS_00016233|organism=Clytia hemisphaerica|type=CDS|length=2457bp|location=Sequence derived from alignment at sc0000231:389816..392651- (Clytia hemisphaerica)
AACCCTGGAAATTGAGTTTAAATCAAATTGACAGGATATGTGACCCACTC
AACAGAGAAAGCAGAATTCCGAATTGGAGGCGCTTAGCAGAAAAGCTTTG
TAACGACGACCCTAAAAAATCTACAAGCCTGAAAGCTCATTTGGACCTTA
AAGGTGGCCCGAATCGGGGTCTACTTCTATTAAAAAAACTCAATACTAAA
GATCCCAGTATTAGAATAGATCAGATTAAACAAGTTGCCGACGAGCTTAA
ACGAAATGATATCGTATTGCGGCTTTCTGAAGATCAATTTCAAGATAACC
CTTTCTTAAGTAACTTAACAATCATATCAAACATCTACATCGCCGAACTA
TTAAACAGTGGCCCTCAAAATGGAAGATGGGATCTTTTTGCTGAAAAATT
CCATCTTCGTAAGACGGAAATAATGAAAATACAAAATGAGCCGCGTAACC
CTGATTATAAAGGACCCGCACAACAATTATTCATGAATACAATGCGTGAA
GCTGGACGGACACTTTATGAATTGAAACAAATCATGAGGGAAATAAAACG
AAATGATCTCGTTATAGAAATTAATAACATCTCAAAAGAAGAACTCGATG
GAACATTAAGAGAAAATTCAGCTGAAGAAACTAGTAATGTTGATACAGAT
TCGGTTTAAAAGAAGGAGAAGGAGAAGACCAAACTCATCCTCATCTGTCG
AAGAAACGGAACTGAATGGCGTCACACAATCACACAACCCACCAAGAACT
GCCGAAAATGAAGATCCTAGACTTGTCGACTTTCAAAAAGAAACTGATGG
GTTGTTGTCGATTTTTCAGAACCCTGGAAATTGAGTTTAAATCAAATTGA
CAGGATATGTGACCCACTCAACAGAGAAAGCAGAATTCCGAATTGGAGGC
GCTTAGCAGAAAAGCTTTGTAACGACGACCCTAAAAAATCTACAAGCCTG
AAAGCTCATTTGGACCTTAAAGGTGGCCCGAATCGGGGTCTACTTCTATT
AAAAAAACTCAATACTAAAGATCCCAGTATTAGAATAGATCAGATTAAAC
AAGTTGCCGACGAGCTTAAACGAAATGATATCGTATTGCGGCTTTCTGAA
GATCAATTTCAAGATAACCCTTTCTTAAGTAACTTAACAATCATATCAAA
CATCTACATCGCCGAACTATTAAACAGTGGCCCTCAAAATGGAAGATGGG
ATCTTTTTGCTGAAAAATTCCATCTTCGTAAGACGGAAATAATGAAAATA
CAAAATGAGCCGCGTAACCCTGATTATAAAGGACCCGCACAACAATTATT
CATGAATACAATGCGTGAAGCTGGACGGACACTTTATGAATTGAAACAAA
TCATGAGGGAAATAAAACGAAATGATCTCGTTATAGAAATTAATAACATC
TCAAAAGAAGAACTCGATGGAACATTAAGAGAAAATTCAGCTGAAGAAAC
TAGTAATGTTGATACAGATTCGGTTTAAAAGAAGGAGAAGGAGAAGACCA
AACTCATCCTCATCTGTCGAAGAAACGGAACTGAATGGCGTCACACAATC
ACACAACCCACCAAGAACTGCCGAAAATGAAGATCCTAGACTTGTCGACT
TTCAAAAAGAAACTGATGGGTTGTTGTCGATTTTTCAGAACCCTGGAAAT
TGAGTTTAAATCAAATTGACAGGATATGTGACCCACTCAACAGAGAAAGC
AGAATTCCGAATTGGAGGCGCTTAGCAGAAAAGCTTTGTAACGACGACCC
TAAAAAATCTACAAGCCTGAAAGCTCATTTGGACCTTAAAGGTGGCCCGA
ATCGGGGTCTACTTCTATTAAAAAAACTCAATACTAAAGATCCCAGTATT
AGAATAGATCAGATTAAACAAGTTGCCGACGAGCTTAAACGAAATGATAT
CGTATTGCGGCTTTCTGAAGATCAATTTCAAGATAACCCTTTCTTAAGTA
ACTTAACAATCATATCAAACATCTACATCGCCGAACTATTAAACAGTGGC
CCTCAAAATGGAAGATGGGATCTTTTTGCTGAAAAATTCCATCTTCGTAA
GACGGAAATAATGAAAATACAAAATGAGCCGCGTAACCCTGATTATAAAG
GACCCGCACAACAATTATTCATGAATACAATGCGTGAAGCTGGACGGACA
CTTTATGAATTGAAACAAATCATGAGGGAAATAAAACGAAATGATCTCGT
TATAGAAATTAATAACATCTCAAAAGAAGAACTCGATGGAACATTAAGAG
AAAATTCAGCTGAAGAAACTAGTAATGTTGATACAGATTCGGTTTAAAAG
AAGGAGAAGGAGAAGACCAAACTCATCCTCATCTGTCGAAGAAACGGAAC
TGAATGGCGTCACACAATCACACAACCCACCAAGAACTGCCGAAAATGAA
GATCCTAGACTTGTCGACTTTCAAAAAGAAACTGATGGGTTGTTGTCGAT
TTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016233-exon-sc0000231-1575043694:392489..392651 | TCONS_00016233-exon-sc0000231-1575043694:392489..392651 | Clytia hemisphaerica | exon |
| TCONS_00016233-exon-sc0000231-1575043694:391701..391837 | TCONS_00016233-exon-sc0000231-1575043694:391701..391837 | Clytia hemisphaerica | exon |
| TCONS_00016233-exon-sc0000231-1575043694:389816..391407 | TCONS_00016233-exon-sc0000231-1575043694:389816..391407 | Clytia hemisphaerica | exon |
| TCONS_00016233-exon-sc0000231-1510915933:392489..392651 | TCONS_00016233-exon-sc0000231-1510915933:392489..392651 | Clytia hemisphaerica | exon |
| TCONS_00016233-exon-sc0000231-1510915933:391701..391837 | TCONS_00016233-exon-sc0000231-1510915933:391701..391837 | Clytia hemisphaerica | exon |
| TCONS_00016233-exon-sc0000231-1510915933:389816..391407 | TCONS_00016233-exon-sc0000231-1510915933:389816..391407 | Clytia hemisphaerica | exon |
| TCONS_00016233-exon-sc0000231-1491911889:392489..392651 | TCONS_00016233-exon-sc0000231-1491911889:392489..392651 | Clytia hemisphaerica | exon |
| TCONS_00016233-exon-sc0000231-1491911889:391701..391837 | TCONS_00016233-exon-sc0000231-1491911889:391701..391837 | Clytia hemisphaerica | exon |
| TCONS_00016233-exon-sc0000231-1491911889:389816..391407 | TCONS_00016233-exon-sc0000231-1491911889:389816..391407 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000231 | supercontig | sc0000231:389816..392651 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007165 | signal transduction |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007165 |
signal transduction |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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