|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016207 ID=TCONS_00016207|Name=TCONS_00016207|organism=Clytia hemisphaerica|type=transcript|length=1503bp
ACATACTGCCCAGAAACGCCCTATCTTTAACAGACTTTGATTAAAAGACA
CAATGTGACCCATCGATCAATACAACAATTTTACCGACAGTTCAGCCGAA
AACCGAGTACGACCCGACATCACACGACATGCATGCGACAAACGAACAAC
TTGTACAACAAATGCACCATCAAACGACGACAAAACCAATTCGAAAGAAA
CCAAGGATTTTATTTTCACAATCTCAAGTTATGGAGTTAGAGAAGAAATT
TAAAGAACAAAAATATCTATCAGCTTCCGAACGTGACCAAATGGCATCAA
AATTAAATCTAACACCAACACAGGTCAAAATTTGGTTCCAAAACAAAAGG
TACAAGTGCAAGAAACAATCACAAGAATCCAGGCGTGGAATCCACCCACC
TCCCTACGAATGGCCTTCACTCTTCAACCACCAACGTAATGTTCCTGTCT
TAGTACAACCACCATCATGCCCGCCCCATTGCTATCGCCCTTCGCCACCA
TCGGTTAATTTAAACTCGCCTATCCCGAGTGAAAGCTATACCGGTTATTT
TCCGGAAAGCTACACTGCTCCACATTACAATAACAATGTTTATTCAACTT
CACCTTATAACCAATGGCCGTGCTACAAGTGATACCatattgaattaaaa
attaCGGTGCTCAGTGGGATCTAATTGGTTGGATCAAGGAGTAAATGATG
CTTTTTCTTCGTACGATGGTCTAAAAGTTCTAACGGGAAAAATGAAGCTA
GGTACATGTCAAGATGGACGGAAATGATGACCTAAACTGAAAATTGAACC
TTTTTCTAGAAGCAAGAAagacttatttatttttttactaaaaGCGACCT
GGCTGTCGCTCTTGCTTTCGAAATAAGAGAAGaacaaaattctttatttt
gaaaaaacggaGGAATGAAACACgctgtaaatattttttcatatacattg
tacatattttttgtttttttgttgttgtttttaagaTAGAAAAGATAGGG
TTTTAGGGAAATTATAATTGCTGTAAAATAGTGTGCGGACGAATTTCTCA
GAGGAAAATATTGTGATGGAGACCAAAGATTGACAATTTTTCCGTGGTCA
CACAGTAAAAAAGGCTTCTACAGCCTGGTTTCCATACAAAGGTTTATTAC
TTTTGGGTACTTTTAAAGGTCATGATTAAAACAAGGATGCTTTTGTTGGG
ATCTATTGTCAATGATCAAGTTTTGACAAGCTTTAGCCTGCTCCTGCAGC
CAGTAGAAAAAATACTTTCACAATCGTCTTTTATGCTGTTTTTGGCTATA
AAAACAATTTATGGGTCTTTTGATACTAAACATATCTCTGAGAATAAACC
TCTTGAAATATCATTTTTGGTGAGGACGCATTTTTAACTTATTTTGTTTT
ATCGCaatatatattttgaaagagatattttttaaaagaaatcttttttt
ttgtacaGAGTTACTGTTTATTAGGAATATTTTGTTGGAATTGATATTAA
AAA Run BLAST on NCBI transcript from alignment at sc0000231:36432..39854- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016207 ID=TCONS_00016207|Name=TCONS_00016207|organism=Clytia hemisphaerica|type=transcript|length=3423bp|location=Sequence derived from alignment at sc0000231:36432..39854- (Clytia hemisphaerica)
ACATACTGCCCAGAAACGCCCTATCTTTAACAGACTTTGATTAAAAGACA
CAATGTGCGTAACCAAGTAAAACTCAAACATCCCTTTTTGCATCGTTTCT
TTTGTAGCGATGGTTTTTCCGAGTGTAATATATCCACCTTACTATAAAAC
GGCAAATATTGGCCATCCATGGATTTAATATAGATGGCTTCTCTATATTA
AATCCATGGGTTATCTAATAGCTTTAGAAGTAATAGACTTTATTCATGTC
TATTTATGTAATTCAACTTTGATTGATTCAGTGTTTAGCTTGCCAAGGGA
AATCGAAACTTACTTAGTAAACCAAGAGTGTTATTGATTTTAACCAAGAA
TTAGAATAACAGGAAACGAGAAATTTTGACGTTCCAAAAAAAAAGGAACA
ACACAAATACTAGGTTACTTGCTGTCTTATAATTTTCAACAAATTACGAA
TTTTAAAAATTGTTTATGTTTTTTTCAAGTTTAGTCAAACTTTAATTATA
ACTGATTTCAAAGGGTTCATATGAACATATCATAAATCGACAGGCATATA
ATCATAACGAGCGCAAGTCTGATTTGCAATTGATTTGCAATGCAATCTTT
TTCACCATTTAGGCGAAAATTATTACGTCATCATTCCTTTTAAGATAAAA
ATCATGGGCTCAAAATCAGACTTACGCATATAAATCAACCTTGTGAAAAT
TTCCCTGTACATTCCCAACATTATTATAAAGAATTAGATCTAAAAGTCAA
GTTGCCATGAGTAGTGTTTCTTTCGTAGTAGAAAGACTTTATAGCAGCCC
TCCATTACAAGGTTGAAAGTCGATGAAAATGGATACACTAGAGTGCCCTT
CAACATTGTCAAGTTTTGTAAAGAGAAATCTTACGACCCTCGACTTGTTT
TACATCTAACGTTCTTGTATTCTTCTGTTTAAATTAAAAAGCCCTTTTTG
TTATAAAACACAAAAATAGCATCACAGTCTTCTAAACCCCCCCCCCCCCA
AGGAGCAGTGCATAAACAAAGCTTACGGACAGTTCTTGCGAAATTGGCCT
AAAAAGTGAAATCAAATTCCTACAAAATTTTTATGAATGAATAAACAAAG
AGTATAGTTTTCTGACAAGTAGAAAATTCGTAAAAGTTAAATTCTACAAA
AAAATGTTTGCGCAAAAATTTGTTTCCATAAGGTTTGTAAATGGTAGGTG
GTGCGAACATGACCTAGAGTGAATGCTGAGTAAAATTGAAAGCATTCCTC
TTCGGATAAAATGGGAGTAATCCTGCTAATACTATAGTGATGAACAATAC
CCGCTTTATCAATGTAACTATTTTTAGTGAAAACGCATAATAGGTCGCGA
TGCGATAATATAAACAAAAGCTGGCGTTGGATAAACAAGAATTTCTATTC
TTCTCAAATACGCCATGACATTGATGCTTTGAAGGATTTGTTGTTTTTTG
TGGTTTGGGAAGGGTACCACTTGTATATAAAAGCTAGAAACATGTACCTA
CTTCATATCACACTTCTACTTCAAAACACAACAAAATTTGTGAGGTACTT
TTGACTCTCTCACACTTATAACAAATACGATTTTCTAAATTGGTACTCTT
TGATACTCACAGGTGACCCATCGATCAATACAACAATTTTACCGACAGTT
CAGCCGAAAACCGAGTACGACCCGACATCACACGACATGCATGCGACAAA
CGAACAACTTGTACAACAAATGCACCATCAAACGACGACAAAACCAATTC
GAAAGAAACCAAGGATTTTATTTTCACAATCTCAAGTTATGGAGTTAGAG
AAGAAATTTAAAGAACAAAAATATCTATCAGCTTCCGAACGTGACCAAAT
GGCATCAAAATTAAATCTAACACCAACACAGGTAAACTATAAATGACTTG
CTCTTCTTTCCAATGTGCATGTACATATATACGTATATCATTAGCCTTTG
CTCATACTCGAGCCAAACCAACAAATTTAAAGGTCGTGCAAGTTGATCTC
GGTAGGAGATTGGTCTTAGCTATATCTCATGCGACTATATTGTTAAGGAC
TTCTATCTGGTTATTCAGTTAATTGATTCAAACCTATAGTTGCCAAACTT
CCAGAATAAATTGAAATGTAACCAAACAAATAGTTCAAAATCCTCAATAC
AATTCGTAATTTATTGTGTGATCGAAAGATTCCCGAAAAATCTTACAGAA
ATTTAGATCATTCATTCATTGTGTATTCATTTTTTCTTTCCAGGTCAAAA
TTTGGTTCCAAAACAAAAGGTACAAGTGCAAGAAACAATCACAAGAATCC
AGGCGTGGAATCCACCCACCTCCCTACGAATGGCCTTCACTCTTCAACCA
CCAACGTAATGTTCCTGTCTTAGTACAACCACCATCATGCCCGCCCCATT
GCTATCGCCCTTCGCCACCATCGGTTAATTTAAACTCGCCTATCCCGAGT
GAAAGCTATACCGGTTATTTTCCGGAAAGCTACACTGCTCCACATTACAA
TAACAATGTTTATTCAACTTCACCTTATAACCAATGGCCGTGCTACAAGT
GATACCATATTGAATTAAAAATTACGGTGCTCAGTGGGATCTAATTGGTT
GGATCAAGGAGTAAATGATGCTTTTTCTTCGTACGATGGTCTAAAAGTTC
TAACGGGAAAAATGAAGCTAGGTACATGTCAAGATGGACGGAAATGATGA
CCTAAACTGAAAATTGAACCTTTTTCTAGAAGCAAGAAAGACTTATTTAT
TTTTTTACTAAAAGCGACCTGGCTGTCGCTCTTGCTTTCGAAATAAGAGA
AGAACAAAATTCTTTATTTTGAAAAAACGGAGGAATGAAACACGCTGTAA
ATATTTTTTCATATACATTGTACATATTTTTTGTTTTTTTGTTGTTGTTT
TTAAGATAGAAAAGATAGGGTTTTAGGGAAATTATAATTGCTGTAAAATA
GTGTGCGGACGAATTTCTCAGAGGAAAATATTGTGATGGAGACCAAAGAT
TGACAATTTTTCCGTGGTCACACAGTAAAAAAGGCTTCTACAGCCTGGTT
TCCATACAAAGGTTTATTACTTTTGGGTACTTTTAAAGGTCATGATTAAA
ACAAGGATGCTTTTGTTGGGATCTATTGTCAATGATCAAGTTTTGACAAG
CTTTAGCCTGCTCCTGCAGCCAGTAGAAAAAATACTTTCACAATCGTCTT
TTATGCTGTTTTTGGCTATAAAAACAATTTATGGGTCTTTTGATACTAAA
CATATCTCTGAGAATAAACCTCTTGAAATATCATTTTTGGTGAGGACGCA
TTTTTAACTTATTTTGTTTTATCGCAATATATATTTTGAAAGAGATATTT
TTTAAAAGAAATCTTTTTTTTTGTACAGAGTTACTGTTTATTAGGAATAT
TTTGTTGGAATTGATATTAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016207-exon-sc0000231-1575043694:39801..39854 | TCONS_00016207-exon-sc0000231-1575043694:39801..39854 | Clytia hemisphaerica | exon |
| TCONS_00016207-exon-sc0000231-1575043694:37974..38242 | TCONS_00016207-exon-sc0000231-1575043694:37974..38242 | Clytia hemisphaerica | exon |
| TCONS_00016207-exon-sc0000231-1575043694:36432..37611 | TCONS_00016207-exon-sc0000231-1575043694:36432..37611 | Clytia hemisphaerica | exon |
| TCONS_00016207-exon-sc0000231-1510915933:39801..39854 | TCONS_00016207-exon-sc0000231-1510915933:39801..39854 | Clytia hemisphaerica | exon |
| TCONS_00016207-exon-sc0000231-1510915933:37974..38242 | TCONS_00016207-exon-sc0000231-1510915933:37974..38242 | Clytia hemisphaerica | exon |
| TCONS_00016207-exon-sc0000231-1510915933:36432..37611 | TCONS_00016207-exon-sc0000231-1510915933:36432..37611 | Clytia hemisphaerica | exon |
| TCONS_00016207-exon-sc0000231-1491911889:39801..39854 | TCONS_00016207-exon-sc0000231-1491911889:39801..39854 | Clytia hemisphaerica | exon |
| TCONS_00016207-exon-sc0000231-1491911889:37974..38242 | TCONS_00016207-exon-sc0000231-1491911889:37974..38242 | Clytia hemisphaerica | exon |
| TCONS_00016207-exon-sc0000231-1491911889:36432..37611 | TCONS_00016207-exon-sc0000231-1491911889:36432..37611 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000231 | supercontig | sc0000231:36432..39854 - |
Blast
BLAST of TCONS_00016207 vs. Swiss-Prot (Human)
Match: NKX26 (Homeobox protein Nkx-2.6 OS=Homo sapiens GN=NKX2-6 PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 8.846e-25 Identity = 63/145 (43.45%), Postives = 84/145 (57.93%), Query Frame = 3
Query: 192 RKKPRILFSQSQVMELEKKFKEQKYLSASERDQMASKLNLTPTQVKIWFQNKRYKCKKQSQESRRGIHPPPYEWPSLFNHQRNVPVLVQP--PSCPPHCYRPSPPSVNLNSPIPSESYTGYFPESYTAPHYNNNVYSTSPYNQWP 620
R+KPR+LFSQ+QV+ LE++FK+Q+YLSA ER+ +AS L LT TQVKIWFQN+RYKCK+Q Q+ + P L + VPVLV+ P P P+ PS + P Y GY Y A + Y+ +P P
Sbjct: 132 RRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQRQDKSLELAGHP-----LTPRRVAVPVLVRDGKPCLGPGPGAPAFPSPYSAAVSPYSCYGGYSGAPYGAGY--GTCYAGAPSGPAP 269
The following BLAST results are available for this feature:
|
