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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016201 ID=TCONS_00016201|Name=TCONS_00016201|organism=Clytia hemisphaerica|type=transcript|length=4563bpRun BLAST on NCBI protein sequence of TCONS_00016201-protein >TCONS_00016201-protein ID=TCONS_00016201-protein|Name=TCONS_00016201-protein|organism=Clytia hemisphaerica|type=polypeptide|length=615bp MNEENFKLAEKYVSTGYVNQGKEARRVLEKNLRTLLEQGKIPTEGWNDLSRun BLAST on NCBI transcript from alignment at sc0000231:253933..268844+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016201 ID=TCONS_00016201|Name=TCONS_00016201|organism=Clytia hemisphaerica|type=transcript|length=14912bp|location=Sequence derived from alignment at sc0000231:253933..268844+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000231:253933..268844+ >TCONS_00016201 ID=TCONS_00016201|Name=TCONS_00016201|organism=Clytia hemisphaerica|type=CDS|length=20328bp|location=Sequence derived from alignment at sc0000231:253933..268844+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016201 vs. Swiss-Prot (Human)
Match: SPCS (O-phosphoseryl-tRNA(Sec) selenium transferase OS=Homo sapiens GN=SEPSECS PE=1 SV=2) HSP 1 Score: 561.607 bits (1446), Expect = 0.000e+0 Identity = 265/463 (57.24%), Postives = 353/463 (76.24%), Query Frame = 1
Query: 61 FKLAEKYVSTGYVNQGKEARRVLEKNLRTLLEQGKIPTEGWNDLSIRQVLNEIALMDSNNFPNNCGVGEREARIASRLVAERHFHLGHGMGRSGDIAEIQPKAAGSSLVAKLANSFALDVIKMAGVSSIKSCLVCPVATGMALVLSMITLKEKRPEAKYVIWSRIDQKSCFKSILTAGXXXXXXXXXXXXGDYLSTDVDSIRTTIERIGSQHIACVLTTTSCFAPRVPDRLEEIALVCKDLDVPHVVNNAYGIQASKCMHLLQQANRVGRVDVFVQSTDKNFMVPVGGSIIAGFDKQLIQDIGKMYPGRASASPIIDFFITMLSLGANGYKKLLQERKELYQYLHDGMKRIAKQFNETVIPAKENTISIALSLRSLDERCDGQKKSITEFGSHLFKRSVSGTRVVTPNDEKTIGRYQFIGWGAHYSNYPCSYLTAAAAIGATRQDIDLFLKRLEKNFKDFLKE 1449
F E+ VS YV QG EARR E +R LLE+GK P GW++ ++ L+E+A+MDSNNF NCGVGERE R+AS LVA RH+ HG+GRSGDI+ +QPKAAGSSL+ K+ NS LD+IK+AGV ++ +C V P+ATGM+L L +TL+ KRP+AKY+IW RIDQKSCFKS++TAG EP++IEN+L GD L TD+ ++ ++ +G I C+ +TTSCFAPRVPDRLEE+A++C + D+PH+VNNAYG+Q+SKCMHL+QQ RVGR+D FVQS DKNFMVPVGG+IIAGF+ IQ+I KMYPGRASASP +D IT+LSLG+NGYKKLL+ERKE++ YL + +K++++ +NE ++ N IS+A++L++LDE D K++T+ GS LF R VSG RVV +T+ Y F G+ +H +NYPC+YL AA+AIG QD+DLF+KRL++ K KE
Sbjct: 6 FAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLE-GDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRD---KAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKE 464 The following BLAST results are available for this feature:
BLAST of TCONS_00016201 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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