TCONS_00016163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016163
Unique NameTCONS_00016163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2677

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016163 ID=TCONS_00016163|Name=TCONS_00016163|organism=Clytia hemisphaerica|type=transcript|length=2677bp
TGAAGAAAAGAATATGTCTCGTAAAAAGATTGTCAAATACAATAAATCGT
CTTGGATTGGAAATAGTATTTGAGCCGATTAATCAATACTAAAAGCAATT
GATTTTTGGCAGACAATAGCGATTACTCTATTGCGCATGGTAACAGAGAG
AGGAATTTATACTGTGGTAACTACGGGATTGATATGTTTTCAGTTGTATT
TTGCCTTCATAAGGTTGATGGTAATGATCAACGTTACCCAGCCTACGGTT
TTGATGAATCAAATAAATCGAACTATATCGTTATGGAGGATCAAGCACTC
ATCAAATGGTCGAATTCATATCTACAAAAACGAGGTTTGAAAATCAGGAC
TTTGGATCAGTTAGAAGATGGTACATTCTTGTTGAccattttggaagaaa
tttcTGGTGACAAACCGCGTCAAATTACCTCACCTTCTAAAAACTCACAT
CCGCCAAGCTTTGTACGTCGTAActgggctaccattttgaatacCCTTGG
ATTAGATGACCATTTAATCGATAAAGTCCAACAAAACAATGCACGATTCG
TCAAAGAGATCTTGTGGAGAATCATTCTACAAAATCAGATTCCAACGAAC
AAACAGAATGGAAAGCCGTTGCATCAACTAGAAATGAAAGATTTTAACGA
AGAATCAAGTCTGTTGTTAGAGTGGGTTAACCGGCGTTTACCAACAGGTG
TCAGCGCACGTAATTGGACCACAGACTGGACGGATGGTCTACTATTATGC
CACCTGATTAACGCCATTCGCCCGGGCGTAATACCTGCTGACCGAATTAA
TCAAAATGTACAGGAGGTACGCATCCGAGCAGCTTTTGAAGGCGCAGAAA
ATCAACTTGGAGTACCGGATTTGATCCTACCCGATGAGCTCGTTAAAGGG
CAGTTGAAACAAGAAGTCCTTGTTACTTATATAGCTTTCCTACGCGATGT
CGCCGGTACAGAATCACCCGCTCCAAAGATGGCTTCAGATTCAGATCTCA
TTGATGCTCAACAAGATGCTGAGCCAGGTATCCCGTATCAATTTAATACA
GTAGTCGCTTTCGGATCCGGATTACGTTGGGGACAAGTTGGGAAACCGTG
TGAATTCGTGTTACGCGTACAGCCAGGCGCCCAGTTGTCAGATCTCTACG
TTTACATCGATTGTAAACCTTATGATAGGAAGTCGACCCGTTTTCGCCCT
GAATTACAGATTAAACCTCTCGATGCGCGTAGCAACATGGTGCGATACAC
ACCCACACGCCCTGGTATTTACACTGTTAGTATTTTCTATAAGAATGAAC
ATATCTTGAATAGCCCTTTCagagttcgaattaaagagatgATGCTTGTG
GATTATGCGACCTTGATTGAAGAATTTCATATCAATTCTGATTTTGAAGA
AGTTCGAATTGCTGAGAAATTGAATGAATTTAATAATAACTATATTGAAG
AGAGTTTGAATACTTCGGTTGAGGAAAAAGGAGTTTCCCTTCCAATCAAT
GGCTTTAAAAAGGATATCGAAAATTCGTACGATAGTCACCACGATAGCGC
TTTCGTTGACGACGACTCTCTCCGATCCCTTTCAGTGTCGTCTGATGGCG
AATTGTTATCGTCAGTAAACGAGAACGACGATATGATTGTCGTACCACCG
GAAAGTCTTCCCAATAAACAGaccaaaacaaatgtcaagaattttaagat
ttttggcaGAGGATTGCATCATGGCGAAGTGGGCTGCTTATCTAAATTTC
ATGTTCACACACCGACCTATTTTGATGGATCGAACGGTAAAATGCAAGGT
CCTCTTTGTGTCAGTATCACCTGCCCGGCAATGTCAATACCTGTACCGTT
TGTCCGTACGAATTTCTCGCCAGAAATGCTGGAACACCAAGTTGTATACG
TGCCGACCGAGCCAGGAATTTACGAAGTATCCGTTAAGTGGGGTCATTTC
CCGATATGTGGGAGTCCCTTCCGATTATCCGTTTCGGATTGCGTTCAAAG
GTCGACCTTTTTTACGTTACCCGAACAAAATCGATTACCGTTATTTCGAA
ATTCAGAAAAGCTTGACATTTTCTTGTATTATAGTGCAAGTTGTGCTGAA
GTCTCCCAACACCAACGTAAAAACGTTTTAGAGAAACTTTTACGTGTTAA
AAGTCCGAACAATGTTGTATATTGTGTCCCTGTTGATATTGAACTTACAT
GGAGCGAGAGACGAGTATTGCTCGAAAAAGCGAACTTCAAAAAACTTCCG
TTTGCTTTTGTGAATGATGAGTTTCTAGGTTGCTATGACAAACTGGTGAA
TTTGAACAATGCTAATTCATTGGCACGGGCTATCTCTGAAATGATTACAA
AACTTCGTCATAAAATAAGGACAACTTAATTGCTACCAAATTCCTATTTT
GTAATGTTCTAATTGTAAACAATTAACTGGCATCAAATGAATGAACTTTT
TAATTATCTCACTTAGTAACTGTACTTAGGTTAGTTTTTGGGGTCAATTT
ATCAATTTTGTAGATAAGGTAATAATTGTCTATCGAATTTCATAATACTA
ATATTTTTGGATTTCAATCGATCgattttgtgttttatttttaaagagtT
CAGTCAGAATTTAGTAATTGTGTTGTGAGTTGTGTGACCAGTTGTGATAA
AAGTATTATTTCTCAAAAGGATTGAAG
Run BLAST on NCBI

protein sequence of TCONS_00016163-protein

>TCONS_00016163-protein ID=TCONS_00016163-protein|Name=TCONS_00016163-protein|organism=Clytia hemisphaerica|type=polypeptide|length=731bp
MFSVVFCLHKVDGNDQRYPAYGFDESNKSNYIVMEDQALIKWSNSYLQKR
GLKIRTLDQLEDGTFLLTILEEISGDKPRQITSPSKNSHPPSFVRRNWAT
ILNTLGLDDHLIDKVQQNNARFVKEILWRIILQNQIPTNKQNGKPLHQLE
MKDFNEESSLLLEWVNRRLPTGVSARNWTTDWTDGLLLCHLINAIRPGVI
PADRINQNVQEVRIRAAFEGAENQLGVPDLILPDELVKGQLKQEVLVTYI
AFLRDVAGTESPAPKMASDSDLIDAQQDAEPGIPYQFNTVVAFGSGLRWG
QVGKPCEFVLRVQPGAQLSDLYVYIDCKPYDRKSTRFRPELQIKPLDARS
NMVRYTPTRPGIYTVSIFYKNEHILNSPFRVRIKEMMLVDYATLIEEFHI
NSDFEEVRIAEKLNEFNNNYIEESLNTSVEEKGVSLPINGFKKDIENSYD
SHHDSAFVDDDSLRSLSVSSDGELLSSVNENDDMIVVPPESLPNKQTKTN
VKNFKIFGRGLHHGEVGCLSKFHVHTPTYFDGSNGKMQGPLCVSITCPAM
SIPVPFVRTNFSPEMLEHQVVYVPTEPGIYEVSVKWGHFPICGSPFRLSV
SDCVQRSTFFTLPEQNRLPLFRNSEKLDIFLYYSASCAEVSQHQRKNVLE
KLLRVKSPNNVVYCVPVDIELTWSERRVLLEKANFKKLPFAFVNDEFLGC
YDKLVNLNNANSLARAISEMITKLRHKIRTT
Run BLAST on NCBI

transcript from alignment at sc0000226:399962..408317-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016163 ID=TCONS_00016163|Name=TCONS_00016163|organism=Clytia hemisphaerica|type=transcript|length=8356bp|location=Sequence derived from alignment at sc0000226:399962..408317- (Clytia hemisphaerica)
TGAAGAAAAGAATATGTCTCGTAAAAAGGTATGCCAAATTTTTTTTTTCT
TTTCTATTCCTTAAATGCCGAGTTCTATACCCAACAACACGCTAGCGCAT
AGTTTGCAAAGAGGTCGCTACCCCTCTCTTTGATTTAATTTGAACTTCTA
CTTTGGATATTCTTATACTAGCCAAACCCTAATTAGCTTTGGTGAAAATG
TATTTCGAAGAGCCTTCTTTGCCCTAAGCCTTTTTATCAGCCTCTTTAAG
AAATACCCCCATCTACCCACCCCTGTTTTTCATGATGCACCATTGTAATC
TCTTTTAACATCACGGACCCAACAGCTTATTGGTGGAAGTGACTTGCAAC
CAATCAGCTGTTGGGTCTGTGGAAGACATTGCAATGGTGCATACCATGAA
ATAAGTATTTTTCCAACCAACCCAACTTATTCCAATGCCCCTATCAGTTC
AATACACCGTAATAAAAATGAAATTTGAAAAGGCTAGCTACTACTCGTAA
TATGCTTAAGTTGGTATAAAATGCCCTTTAGGTGTTGGTATCAAAGAAAT
ACCCAAAAATCCTTTTGACGCGCCATACTTACTTTAAAGAACGTTAAATG
AAAAGAAACGTGATTGAAGTAAGTAAGTAGTGTTTGAAGGAAGGGATTCG
ACTCCCTATTCTACCATCGTTTTGAATAAGATTCCCATTCATGGGCTAAT
TTTCTCCTGACTTTTCCAGAATTTTCCCACTATTTTATCCCGGGATAGGC
GACATGATATTGGAAAGGGTTTTTTCTAAAGGTGCGGAAAATCTTGTGTT
TAGTTACAAAATCGCCTAACTTTCTGAAGCTCATTTTTCAACTACCCAGA
GTCCTGGTCTTTTTTCCTATGGAAAAGTAGCAGAGGAATCTTAGTGCGGG
AAAGGGGGAATGTTATGCAAAAAGACAGTATTTGCGTCAGGCATGGCCAA
TCATATGCTGAGGTAGAGCGCCCGCCATACATACACTCAGCTCCCAGACA
GTTACTTGTAATATAACCTAGACAATGCTATCGACTGTTCATAAATTTTT
CCCGCCTCCTAAACTATTCCCTTTTTTAGTGATCTTGTGTAGACGATAGG
ATCGATTCTAAAATGAACACTAGGATGAATGTAAAGCAAAGCAAGGAAGT
ATTAAGTCCCTGAATAATTTTAATATTTCCTTCGTATATCCTTAAAACTT
TTTCAAGAAAAAAAACATTTTTTTGATATGTATTTGCAAATTAATTTGTC
TACATTCGAAGTGGTTTTATCTAATGTGGTGAGAGCAAGATAAACTGTAT
TCTCGTGAGTACATCGTTTGAAATTATATGTCAAATTCTTGTGTTTTAGA
CGTGAAAAAATATTTTATCGTTCTCTCTCTCCCTCTTTTTCTAAATTCTC
ATGTGTATCTTGATTGTATGCATTTGGTGATATGATGCATTTTTGTACTA
CTATATATTTAGTGACTGTCATTTTTTGTTTAGTAACATTTTGGACGGTT
GTCGGTATGAATAAAATCTCTTCATTTTACGTCTATTTCGACCTACTTCA
AAAGTTTTATATATTGAAAATGTTTTTCGCTTGTTTACTAGTTTTAAAGT
TGGTTGATATGGCATGACAATTTTCTTTGCAAGTAATCTAAAATTTTGCT
CAGCGCATAGTGACTGGAATATTCTTTTTTGCGTCTCTTTTATGTCGTCT
TAACAATCATTTTAATTTATGTTTGTATTATTTTTTCTTCCATAAGATTT
TTCAAAAATATGGTTGTCTATTGCAAAGGGTGTGAGCGAAATTTTCTTTT
TATCTGTAAGCTGTTAAATGATATAAGGGTCGTTACGATTCTGCATTTGT
TGCATCGTGGAGCTTTGTATAATCTACACTTTGTTATAAGAACTCGCCAG
ACTCAATTCTTATGCCAAAACCTGAGACCAAATCAGGATTAATCTCAGCC
TCAAATTTCAGAAATGGCTGATTCCCTTTTCAACCAATCAGAATAGAGTA
AGAACGTGCAGAATACTTTAAGAGCATACAGCGTAAACCTGGAAATCAAG
GGAAATAAAAACAGTCGAAATTCTTATTAAAGTTGTTATAAAAAAGCGTG
TTCCACCCTCTATATCAGTTACATCTTTCCCCGCTGGTAATTGGTCGGGG
AATCGTCCAGTACTTTGCAGGGATCGATGAGCTGTACTTCATTCTTACTG
TTAAGTCTCTCACTTTCAAAGTGGAAAGACAAATACTCCGATCCAATGAA
AGCTTCTTTCACGGGGAATACTTTGTCTTGTCAGGGCCCCAATGAATTTC
AATGATTTTTGAGGACATGTATGTATACAAAATTTAATTTACTTGACCTC
AAAATGTTGATCCAGATTCTTAAAATGAAAGAATTCCATTGTGAATGCTC
ATTAAGGACCCCCTAATGAGTTTTGGGGTACTTTTTGATAATTTATTTTC
CTAGTCTAAATTTAACTTCGATTTTCTTTTACTTCCGTTTGGATGTTTAA
GTGTTATGCTTTCCGCTTCCTATCTATCCACTTGATTCTGAGTTCATTAT
ATTGAAAGCTCTTCAATTTAAATGGACCAGATTAATTAGTTTCATAAGAA
ATCACAGCAAGGTACAATTATCAAAGTTTTGATAGTCAACCAGCCCATTT
ATATCAAATAGTCCCTCAAGGAATGAAATTTAATTACATTCAAAATACAT
CTGATTCAAAATTGTACAAAAATCGCCTTTGAAGCGGATTAACATTCTTT
TGTTTTTGATATTTCTCTCAGTTTATTGTATATTATATATACCTCAATCC
ATCCTATTCGCAGATTGTCAAATACAATAAATCGTCTTGGATTGGAAATA
GTATTTGAGCCGATTAATCAATACTAAAAGCAATTGATTTTTGGCAGACA
ATAGCGATTACTCTATTGCGCATGGTAACAGAGAGAGGAATTTATACTGT
GGTAACTACGGGATTGATATGTTTTCAGTTGTATTTTGCCTTCATAAGGT
TGATGGTAATGATCAACGTTACCCAGCCTACGGTTTTGATGAATCAAATA
AATCGAACTATATCGTTATGGAGGATCAAGCACTCATCAAATGGTCGAAT
TCATATCTACAAAAACGAGGTTTGAAAATCAGGACTTTGGATCAGTTAGA
AGATGGTACATTCTTGTTGACCATTTTGGAAGAAATTTCTGGTGACAAAC
CGCGTCAAATTACCTCACCTTCTAAAAACTCACATCCGCCAAGCTTTGTA
CGTCGTAACTGGGCTACCATTTTGAATACCCTTGGATTAGATGACCATTT
AATCGGTAAGGTTTTATGAATCTTAAAATTCCATTTTTATTTTCATTGGT
TTTTTTATTATGAGATCTTATCCTTGATCCTACATTAAAAGATTGTTGAT
CAATTATATAAAAAATTTAAAGTTAATACCATTTAACATCAGGGTTCAAA
ATGTAGGTATGTAAAACCAATGTTTTTCTTATGTGGGTTTGAATTAGTGT
CTCTCGTGCGTAGATCTAAATATTTTCATGCATGGTCATATATTTTCCTT
TGGTTCTCCTTTATCATCTTAGTGGCTTGGTTAGATCCATTAGATATAGA
TGTGGAGTAGGTTCACAGATATTTCAAGCTTTAGCCTAGGTACTTCAATT
AGGAGTCGAGATAGTATAAAGGAGCCAGTTTTATTATAACATAGGATGGA
GTTGAACAGGTTTTGACTACTGTTTTTTAACATCTTCATCTTTTGACAAA
GGTTTTCACTCATTTTTCTCTTCTAGTAAAGTTAGACTTTCAATTTTTCT
ATCTTCTCGTTTTCACTATAATATTTTTTCAGTAACAAGTAGGGTAGAAA
ATAAGACCATCCATTCACCTTTGCTTTTATATCATATTTTATGGTACATC
TTGGATAAACACTAGCTTCTGTTCATGTCTTCAACATTTTTCTCATTTCT
TGAATAATTCTGATGATATGCTCTGCTCTGTTGTGGTGATTCATGGAGAA
AATTGAAAAAATTATCTGTAGCAAATAGTTTATTGATTTCAGCGTTTTTA
TTCTCTTATAGATTTAGGTAAGTCTTGATTCTTAGCGTGTATTGGCGAGT
AAGATGTCTTAAAAATACCTTAAAACCATGAAATTGGCAGAGGTTTCTTT
TAGCAACGTAAAGTTACAGTTGAATTTGAAAGCTTGATGAAATAGTTTGT
CAAAATGTAATGAAATCACTTATGACTTTTAAAATGGTCTAGTCTGTCAG
GGTTGGTTTGAGAACTTTGGTCAGATAAGATATCGCCTCTGAAACGGCAT
CAAACGAGGTCCCCCATGCGGTTTGCGTGATGGCATGATAGGGACTTCTT
TTTTGTGATTTCGTGATCAGGGGTCAAAACGTGATCGTAATTTCAAACAT
TTTTGAGCCGTGATACGTGATTCAGACTTCAAAGGGCGGTGCGTGATTAT
CCATTTTTTTGCTGATTTGCGTGATCGTGATTGAAGACAAAAATTTATAG
CGTGATATCGTGATCAGAGTTACTCCTGGGGGCCTTTCAAACTATCCTTG
TCTTTTTGTGGGAAGAGTATTCTCCTAGTATGTAAAGAATAAAGATAGGA
GAACTTTTTCATTCAAAGTGACACAAGTAATCCGACCCCCTATGTTTCGT
AAATGAGGTGACGGGCCGTCTTTCGAACATAGAAATCCTCACCATTTCTC
ACAAAAAGGTTTTTTGAACAGAGAGGAGATCAAGAGAAAGAAATATGAAA
TCGAAAATAATAGAGATTACAATGTAAATTATTTATAAACACACAGAGAT
TTGAATCGGGGCCCAAGGTTGTACAACTTCTTTTCTCTACTCTACTAAAA
TCCTGTGTTCAGTTTCCCTCATAATCATAACAACGAATTTATAAGATTTC
TTTTCAAAATAATGTTCGACAAAAAAATTCAAAACATATTGTGAAAATAG
AAAAAAAGAGGAAAGCAATTTTGATTTTGTTTCTTCAGTCAGTTCTATTG
AGTTTGGTCAAGATACCGGCAGCACGTCACCGCGTTTTGATACACTGGTA
CAAAGTGTGACAGATTTCAAGTCGATATATACCTATTTTTATACTTTTTT
TAGGGGAGAAATCCCTTATTTATCCTCGATTAGGGTTAGCTTCGGAGAGG
CTGATACCTCTCTTGACTGGTAAGTACATCTGCGTGAATCTAAATTTAAG
TTGATGGGCGGTCGAAGACGTAAGTTTCTGAGACTTTTCCATGAAAATGG
GATTTTTGTTTCGTAAAAGTTCTGTTTTCAGAATCTCAAGCCAATCTGTA
CGCTTGTAACACAGATTGTTTTTGTTGAGAATAAAGTATTTTTGATAATA
GCTTATCTTTCAACTTTACAACGTGTAAAGGCTACCTGGAGTTACCATAG
TTATTGTAGTTCTTCAATCCAATGTGATAGTGCCCTTGTCCATTTTCTTA
TTCGGAGAAAGCTCAGGAGAAAAAAGTCAGATAAGACGCTGATCTTGATT
CTTTTTTGTGGTACTTTTTTAAGCCCCTTATCTGGGAAGGATCAAATCTT
TCTTACTTTACTCCTTTATAAGTTTGGTAATCTCTGTGAGAATGTCTGTG
TATAAAAGGCTACAGTATTTTAAAGACTACAGTATATGACTTTTATTTTG
TGGTCAATGAGTGGTAGATAATATGTTCTCAATTTTCGGAATGCAATCCA
TTTGTCAGTACTTTACACCACTTTTTCGATATGCATTCTTAACGCTGAAA
AAGTATAGCTGCAAACATATGTTTCTATAATGTATTGATTATCGAAATTT
GTCTCTTAAAAAAAATCAGGGGACGTCTTTAAAAACAAGACGAAATCTAA
GAAGTACCTCACAATTTGCTAAAAATCCATGGGGCTTTCCAAAATTCGAC
AAAAATCCAAAATGATTGACCTTCCAAAAGTGACCGCCTCGACTTGTATA
GAAAATGTTCCTGGAATAGTGAATTGTCTAAACTAAATAGAAAGTACCTA
GGAGTGAGTACGAGCTGGATTTTTTCCATTATTAAACATTTAGGAAAAAT
AGTATCATTAAGTTTATGTTTTTTACGTACATTGATACTTTTGAATTTAC
AGCATATGTATCTCAACGTTTAACAGGGAAATCCAGTTAGGTAACTTTAT
AGCATTCAGTATTTAGTTTTACAATTTCATTCTATTTTTTCATTCACAGA
TAAAGTCCAACAAAACAATGCACGATTCGTCAAAGAGATCTTGTGGAGAA
TCATTCTACAAAATCAGATTCCAACGAACAAACAGAATGGAAAGCCGTTG
CATCAACTAGAAATGAAAGATTTTAACGAAGAATCAAGTCTGTTGTTAGA
GTGGGTTAACCGGCGTTTACCAACAGGTGTCAGCGCACGTAATTGGACCA
CAGACTGGACGGATGGTCTACTATTATGCCACCTGATTAACGCCATTCGC
CCGGGCGTAATACCTGCTGACCGAATTAATCAAAATGTACAGGAGGTACG
CATCCGAGCAGCTTTTGAAGGCGCAGAAAATCAACTTGGAGTACCGGATT
TGATCCTACCCGATGAGCTCGTTAAAGGGCAGTTGAAACAAGAAGTCCTT
GTTACTTATATAGCTTTCCTACGCGATGTCGCCGGTACAGAATCACCCGC
TCCAAAGATGGCTTCAGATTCAGATCTCATTGATGCTCAACAAGATGCTG
AGCCAGGTATCCCGTATCAATTTAATACAGTAGTCGCTTTCGGATCCGGA
TTACGTTGGGGACAAGTTGGGAAACCGTGTGAATTCGTGTTACGCGTACA
GCCAGGCGCCCAGTTGTCAGATCTCTACGTTTACATCGATTGTAAACCTT
ATGATAGGAAGTCGACCCGTTTTCGCCCTGAATTACAGATTAAACCTCTC
GATGCGCGTAGCAACATGGTGCGATACACACCCACACGCCCTGGTATTTA
CACTGTTAGTATTTTCTATAAGAATGAACATATCTTGAATAGCCCTTTCA
GAGTTCGAATTAAAGAGATGATGCTTGTGGATTATGCGACCTTGATTGAA
GAATTTCATATCAATTCTGATTTTGAAGAAGTTCGAATTGCTGAGAAATT
GAATGAATTTAATAATAACTATATTGAAGAGAGTTTGAATACTTCGGTTG
AGGAAAAAGGAGTTTCCCTTCCAATCAATGGCTTTAAAAAGGATATCGAA
AATTCGTACGATAGTCACCACGATAGCGCTTTCGTTGACGACGACTCTCT
CCGATCCCTTTCAGTGTCGTCTGATGGCGAATTGTTATCGTCAGTAAACG
AGAACGACGATATGATTGTCGTACCACCGGAAAGTCTTCCCAATAAACAG
ACCAAAACAAATGTCAAGAATTTTAAGATTTTTGGCAGAGGATTGCATCA
TGGCGAAGTGGGCTGCTTATCTAAATTTCATGTTCACACACCGACCTATT
TTGATGGATCGAACGGTAAAATGCAAGGTCCTCTTTGTGTCAGTATCACC
TGCCCGGCAATGTCAATACCTGTACCGTTTGTCCGTACGAATTTCTCGCC
AGAAATGCTGGAACACCAAGTTGTATACGTGCCGACCGAGCCAGGAATTT
ACGAAGTATCCGTTAAGTGGGGTCATTTCCCGATATGTGGGAGTCCCTTC
CGATTATCCGTTTCGGATTGCGTTCAAAGGTCGACCTTTTTTACGTTACC
CGAACAAAATCGATTACCGTTATTTCGAAATTCAGAAAAGCTTGACATTT
TCTTGTATTATAGTGCAAGTTGTGCTGAAGTCTCCCAACACCAACGTAAA
AACGTTTTAGAGAAACTTTTACGTGTTAAAAGTCCGAACAATGTTGTATA
TTGTGTCCCTGTTGATATTGAACTTACATGGAGCGAGAGACGAGTATTGC
TCGAAAAAGCGAACTTCAAAAAACTTCCGTTTGCTTTTGTGAATGATGAG
TTTCTAGGTTGCTATGACAAACTGGTGAATTTGAACAATGCTAATTCATT
GGCACGGGCTATCTCTGAAATGATTACAAAACTTCGTCATAAAATAAGGA
CAACTTAATTGCTACCAAATTCCTATTTTGTAATGTTCTAATTGTAAACA
ATTAACTGGCATCAAATGAATGAACTTTTTAATTATCTCACTTAGTAACT
GTACTTAGGTTAGTTTTTGGGGTCAATTTATCAATTTTGTAGATAAGGTA
ATAATTGTCTATCGAATTTCATAATACTAATATTTTTGGATTTCAATCGA
TCGATTTTGTGTTTTATTTTTAAAGAGTTCAGTCAGAATTTAGTAATTGT
GTTGTGAGTTGTGTGACCAGTTGTGATAAAAGTATTATTTCTCAAAAGGA
TTGAAG

Coding sequence (CDS) from alignment at sc0000226:399962..408317-

>TCONS_00016163 ID=TCONS_00016163|Name=TCONS_00016163|organism=Clytia hemisphaerica|type=CDS|length=4392bp|location=Sequence derived from alignment at sc0000226:399962..408317- (Clytia hemisphaerica)
ATAAAGTCCAACAAAACAATGCACGATTCGTCAAAGAGATCTTGTGGAGA
ATCATTCTACAAAATCAGATTCCAACGAACAAACAGAATGGAAAGCCGTT
GCATCAACTAGAAATGAAAGATTTTAACGAAGAATCAAGTCTGTTGTTAG
AGTGGGTTAACCGGCGTTTACCAACAGGTGTCAGCGCACGTAATTGGACC
ACAGACTGGACGGATGGTCTACTATTATGCCACCTGATTAACGCCATTCG
CCCGGGCGTAATACCTGCTGACCGAATTAATCAAAATGTACAGGAGGTAC
GCATCCGAGCAGCTTTTGAAGGCGCAGAAAATCAACTTGGAGTACCGGAT
TTGATCCTACCCGATGAGCTCGTTAAAGGGCAGTTGAAACAAGAAGTCCT
TGTTACTTATATAGCTTTCCTACGCGATGTCGCCGGTACAGAATCACCCG
CTCCAAAGATGGCTTCAGATTCAGATCTCATTGATGCTCAACAAGATGCT
GAGCCAGGTATCCCGTATCAATTTAATACAGTAGTCGCTTTCGGATCCGG
ATTACGTTGGGGACAAGTTGGGAAACCGTGTGAATTCGTGTTACGCGTAC
AGCCAGGCGCCCAGTTGTCAGATCTCTACGTTTACATCGATTGTAAACCT
TATGATAGGAAGTCGACCCGTTTTCGCCCTGAATTACAGATTAAACCTCT
CGATGCGCGTAGCAACATGGTGCGATACACACCCACACGCCCTGGTATTT
ACACTGTTAGTATTTTCTATAAGAATGAACATATCTTGAATAGCCCTTTC
AGAGTTCGAATTAAAGAGATGATGCTTGTGGATTATGCGACCTTGATTGA
AGAATTTCATATCAATTCTGATTTTGAAGAAGTTCGAATTGCTGAGAAAT
TGAATGAATTTAATAATAACTATATTGAAGAGAGTTTGAATACTTCGGTT
GAGGAAAAAGGAGTTTCCCTTCCAATCAATGGCTTTAAAAAGGATATCGA
AAATTCGTACGATAGTCACCACGATAGCGCTTTCGTTGACGACGACTCTC
TCCGATCCCTTTCAGTGTCGTCTGATGGCGAATTGTTATCGTCAGTAAAC
GAGAACGACGATATGATTGTCGTACCACCGGAAAGTCTTCCCAATAAACA
GACCAAAACAAATGTCAAGAATTTTAAGATTTTTGGCAGAGGATTGCATC
ATGGCGAAGTGGGCTGCTTATCTAAATTTCATGTTCACACACCGACCTAT
TTTGATGGATCGAACGGTAAAATGCAAGGTCCTCTTTGTGTCAGTATCAC
CTGCCCGGCAATGTCAATACCTGTACCGTTTGTCCGTACGAATTTCTCGC
CAGAAATGCTGGAACACCAAGTTGTATACGTGCCGACCGAGCCAGGAATT
TACGAAGTATCCGTTAAGTGGGGTCATTTCCCGATATGTGGGAGTCCCTT
CCGATTATCCGTTTCGGATTGCGTTCAAAGGTCGACCTTTTTTACGTTAC
CCGAACAAAATCGATTACCGTTATTTCGAAATTCAGAAAAGCTTGACATT
TTCTTGTATTATAGTGCAAGTTGTGCTGAAGTCTCCCAACACCAACGTAA
AAACGTTTTAGAGAAACTTTTACGTGTTAAAAGTCCGAACAATGTTGTAT
ATTGTGTCCCTGTTGATATTGAACTTACATGGAGCGAGAGACGAGTATTG
CTCGAAAAAGCGAACTTCAAAAAACTTCCGTTTGCTTTTGTGAATGATGA
GTTTCTAGGTTGCTATGACAAACTGGTGAATTTGAACAATGCTAATTCAT
TGGCACGGGCTATCTCTGAAATGATTACAAAACTTCGTCATAAAATAAGG
ACAACTTAAATGTTTTCAGTTGTATTTTGCCTTCATAAGGTTGATGGTAA
TGATCAACGTTACCCAGCCTACGGTTTTGATGAATCAAATAAATCGAACT
ATATCGTTATGGAGGATCAAGCACTCATCAAATGGTCGAATTCATATCTA
CAAAAACGAGGTTTGAAAATCAGGACTTTGGATCAGTTAGAAGATGGTAC
ATTCTTGTTGACCATTTTGGAAGAAATTTCTGGTGACAAACCGCGTCAAA
TTACCTCACCTTCTAAAAACTCACATCCGCCAAGCTTTGTACGTCGTAAC
TGGGCTACCATTTTGAATACCCTTGGATTAGATGACCATTTAATCGATAA
AGTCCAACAAAACAATGCACGATTCGTCAAAGAGATCTTGTGGAGAATCA
TTCTACAAAATCAGATTCCAACGAACAAACAGAATGGAAAGCCGTTGCAT
CAACTAGAAATGAAAGATTTTAACGAAGAATCAAGTCTGTTGTTAGAGTG
GGTTAACCGGCGTTTACCAACAGGTGTCAGCGCACGTAATTGGACCACAG
ACTGGACGGATGGTCTACTATTATGCCACCTGATTAACGCCATTCGCCCG
GGCGTAATACCTGCTGACCGAATTAATCAAAATGTACAGGAGGTACGCAT
CCGAGCAGCTTTTGAAGGCGCAGAAAATCAACTTGGAGTACCGGATTTGA
TCCTACCCGATGAGCTCGTTAAAGGGCAGTTGAAACAAGAAGTCCTTGTT
ACTTATATAGCTTTCCTACGCGATGTCGCCGGTACAGAATCACCCGCTCC
AAAGATGGCTTCAGATTCAGATCTCATTGATGCTCAACAAGATGCTGAGC
CAGGTATCCCGTATCAATTTAATACAGTAGTCGCTTTCGGATCCGGATTA
CGTTGGGGACAAGTTGGGAAACCGTGTGAATTCGTGTTACGCGTACAGCC
AGGCGCCCAGTTGTCAGATCTCTACGTTTACATCGATTGTAAACCTTATG
ATAGGAAGTCGACCCGTTTTCGCCCTGAATTACAGATTAAACCTCTCGAT
GCGCGTAGCAACATGGTGCGATACACACCCACACGCCCTGGTATTTACAC
TGTTAGTATTTTCTATAAGAATGAACATATCTTGAATAGCCCTTTCAGAG
TTCGAATTAAAGAGATGATGCTTGTGGATTATGCGACCTTGATTGAAGAA
TTTCATATCAATTCTGATTTTGAAGAAGTTCGAATTGCTGAGAAATTGAA
TGAATTTAATAATAACTATATTGAAGAGAGTTTGAATACTTCGGTTGAGG
AAAAAGGAGTTTCCCTTCCAATCAATGGCTTTAAAAAGGATATCGAAAAT
TCGTACGATAGTCACCACGATAGCGCTTTCGTTGACGACGACTCTCTCCG
ATCCCTTTCAGTGTCGTCTGATGGCGAATTGTTATCGTCAGTAAACGAGA
ACGACGATATGATTGTCGTACCACCGGAAAGTCTTCCCAATAAACAGACC
AAAACAAATGTCAAGAATTTTAAGATTTTTGGCAGAGGATTGCATCATGG
CGAAGTGGGCTGCTTATCTAAATTTCATGTTCACACACCGACCTATTTTG
ATGGATCGAACGGTAAAATGCAAGGTCCTCTTTGTGTCAGTATCACCTGC
CCGGCAATGTCAATACCTGTACCGTTTGTCCGTACGAATTTCTCGCCAGA
AATGCTGGAACACCAAGTTGTATACGTGCCGACCGAGCCAGGAATTTACG
AAGTATCCGTTAAGTGGGGTCATTTCCCGATATGTGGGAGTCCCTTCCGA
TTATCCGTTTCGGATTGCGTTCAAAGGTCGACCTTTTTTACGTTACCCGA
ACAAAATCGATTACCGTTATTTCGAAATTCAGAAAAGCTTGACATTTTCT
TGTATTATAGTGCAAGTTGTGCTGAAGTCTCCCAACACCAACGTAAAAAC
GTTTTAGAGAAACTTTTACGTGTTAAAAGTCCGAACAATGTTGTATATTG
TGTCCCTGTTGATATTGAACTTACATGGAGCGAGAGACGAGTATTGCTCG
AAAAAGCGAACTTCAAAAAACTTCCGTTTGCTTTTGTGAATGATGAGTTT
CTAGGTTGCTATGACAAACTGGTGAATTTGAACAATGCTAATTCATTGGC
ACGGGCTATCTCTGAAATGATTACAAAACTTCGTCATAAAATAAGGACAA
CTTAAATGTTTTCAGTTGTATTTTGCCTTCATAAGGTTGATGGTAATGAT
CAACGTTACCCAGCCTACGGTTTTGATGAATCAAATAAATCGAACTATAT
CGTTATGGAGGATCAAGCACTCATCAAATGGTCGAATTCATATCTACAAA
AACGAGGTTTGAAAATCAGGACTTTGGATCAGTTAGAAGATGGTACATTC
TTGTTGACCATTTTGGAAGAAATTTCTGGTGACAAACCGCGTCAAATTAC
CTCACCTTCTAAAAACTCACATCCGCCAAGCTTTGTACGTCGTAACTGGG
CTACCATTTTGAATACCCTTGGATTAGATGACCATTTAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009023XLOC_009023Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016163-proteinTCONS_00016163-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016163-exon-sc0000226-1575043694:408290..408317TCONS_00016163-exon-sc0000226-1575043694:408290..408317Clytia hemisphaericaexon
TCONS_00016163-exon-sc0000226-1575043694:405013..405504TCONS_00016163-exon-sc0000226-1575043694:405013..405504Clytia hemisphaericaexon
TCONS_00016163-exon-sc0000226-1575043694:399962..402118TCONS_00016163-exon-sc0000226-1575043694:399962..402118Clytia hemisphaericaexon
TCONS_00016163-exon-sc0000226-1510915933:408290..408317TCONS_00016163-exon-sc0000226-1510915933:408290..408317Clytia hemisphaericaexon
TCONS_00016163-exon-sc0000226-1510915933:405013..405504TCONS_00016163-exon-sc0000226-1510915933:405013..405504Clytia hemisphaericaexon
TCONS_00016163-exon-sc0000226-1510915933:399962..402118TCONS_00016163-exon-sc0000226-1510915933:399962..402118Clytia hemisphaericaexon
TCONS_00016163-exon-sc0000226-1491911889:408290..408317TCONS_00016163-exon-sc0000226-1491911889:408290..408317Clytia hemisphaericaexon
TCONS_00016163-exon-sc0000226-1491911889:405013..405504TCONS_00016163-exon-sc0000226-1491911889:405013..405504Clytia hemisphaericaexon
TCONS_00016163-exon-sc0000226-1491911889:399962..402118TCONS_00016163-exon-sc0000226-1491911889:399962..402118Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000226supercontigsc0000226:399962..408317 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.445628	0.616791	0.423182	0.302551	99.235	69.0571	55.4629	60.7996	34.8509	53.2066	18.2631	25.3704	7.16076	5.85787	1.11828	1.02489	8.35249	6.08342	12.286	12.6325	7.2968	8.07412	5.3732	5.88899	9.15231	7.9065	4.9672	5.55357	1.57957	1.5118
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001715CH-domain
IPR001298Filamin/ABP280_rpt
IPR017868Filamin/ABP280_repeat-like
IPR013783Ig-like_fold
IPR014756Ig_E-set
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00016163 vs. Swiss-Prot (Human)
Match: FLNA (Filamin-A OS=Homo sapiens GN=FLNA PE=1 SV=4)

HSP 1 Score: 82.8037 bits (203), Expect = 7.855e-16
Identity = 89/392 (22.70%), Postives = 163/392 (41.58%), Query Frame = 1 
Query:  214 VDGNDQRYPAYGFDESNKSNYIVMEDQALIKWSNSYLQKRGLKIRTLD-QLEDGTFLLTILEEISGDKPRQITSPSKNSHPPSFVRRNWATILNTLG-LDDHLIDKVQ-------QNNARFVKEILWRIILQNQIPTNKQNGKPLHQLEMKDFNEESS---LLLEWVNRRLPTGVSARNWTTDWTDGLLLCHLINAIRPGVIPA-DRINQNVQEVRIRAAFEGAENQLGVPDLILPDELVKGQLKQEVLVTYIAFLRDVAGTESPAPKMASDSDLIDAQQDAEPGIPYQ----FNTVVAFGSGLR--WGQVGKPCEFVLRVQPGAQLSDLYVYIDCKPYDRKSTRFRPELQIKPLDARSNMVRYTPTRPGIYTVSIFYKNEHILNSPFRVRI 1332
            VD  D   PA   D +  + +  ++     +W N +L+    +I  L   L DG  L+ +LE +S  K  +     K++  P+F +     +   L  LD   I  V          N + +  ++W +IL   I        P+   E  +  ++ +    LL W+  +LP  +   N++ DW  G  L  L+++  PG+ P  D  + +      R A + A++ LG+P +I P+E+V   + +  ++TY+        ++ P  K+             +PG P +         A+G G+      V K  EF +  +   Q  ++ VY++    D    +   ++       R+  V Y P   G + V++ +  +HI  SPF V +
Sbjct:   21 VDTRDAEMPATEKDLAEDAPWKKIQQNTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHR-----KHNQRPTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYSI------SMPMWDEEEDEEAKKQTPKQRLLGWIQNKLPQ-LPITNFSRDWQSGRALGALVDSCAPGLCPDWDSWDASKPVTNAREAMQQADDWLGIPQVITPEEIVDPNVDEHSVMTYL--------SQFPKAKL-------------KPGAPLRPKLNPKKARAYGPGIEPTGNMVKKRAEFTVETRSAGQ-GEVLVYVE----DPAGHQEEAKVTANNDKNRTFSVWYVPEVTGTHKVTVLFAGQHIAKSPFEVYV 374
The following BLAST results are available for this feature:
BLAST of TCONS_00016163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FLNA7.855e-1622.70Filamin-A OS=Homo sapiens GN=FLNA PE=1 SV=4[more]
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