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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016141 ID=TCONS_00016141|Name=TCONS_00016141|organism=Clytia hemisphaerica|type=transcript|length=1681bp ATTATGGGTACAGTCATTATTTCCACCCTGTACACCACTACCGGCACCAT TTACATCGTATCGGACATCACCATGACTACGATGGTGATTTTGACGACGA TGAGGATGATGACGAAGAATTTTTCCGTCCTTACATTTCTCACGTCGAGC CTATTGATGATGAAATTGACCCAATAAAACGTATTGGACCTATTGACCCA ATCGACCCTATGGAGCCAATTGAAAGAATCGACGAGATTGAACCGATCGA ACCGATCCAGAACATTGAATCGATGGAACCGATCGAACGAGCCGAACAAA TGGAAGGATTAGTTCCCATGAGGTCTATCGAAGAAGAAGATGGTGCaagg aaaaatcatattccaCTCAAATATAACAAAACTGGTGCTGATAGAAAGAT GAAATTAAGTATGAATCACCGAAGACATTTATCAAAACACAATTTGACAC GCCATCTTTACCATCTCGCACCACACGTGGAAGAAGCACCTTTAATACGA AATCCAAACGATCATCCCAACGTGACCAGTGACCGAGTCTTAATGTTACC AAGTGGTACCGCTGTCGTTAATCTAGATGGTTATCAACATCACAGGGCAA TAGTGGGAGCACGTGGGGCCATGGGCGTGGACCATCCCGCGACAGGGGCA ACTGGTGCAGAATATGCAGCCCTCGGGGCCATCGATAGCCGTATAGGGGT TGGTGATCCAGCTAAAGGGGTCATAGACCCAGCAACAGGTGTTACAGATC CTGCACAAGGTGTGACCAAGGAAGCCGTAAAAGCTGAAGGTGCAGGCCCT AACACCAAATTGGAACCAGGCGTAAAGTTGCCACTCAATGAAGGATTTAA GAAAGATCATGTCTGTAAAACGAATGATACTAAAAAAGGGGTGATGAAAA GTTTGAATGAGACTCTATGTCATTCAAACATGACTTTCAAGAAAAGCATT GAAAATAATAATGTGAATTTAAGTAATTCAACTTTGGGTGCGAAGGTCCA GAATTTCAAAAGTAAAGGAAATTTCACACACAAGAATGAACTCAAATCAC TCGAGAGCGATGACATTCCAAACCACCAAGGAAAAACAACAGTACTGGAT AGAGACTTTGGTAACAAAACAGTGAATGTTATGAGTGGAAATATGACCGA TGTGAACAAGAATCAAACAATGAAACATCCTGTGACCTCGGAGAACATTT CAAAATCGAAAGCGTccatcaaaataacaaaaacgaAACAATTGAACAAC GATAAGAACCAGACTTCAAGTTTAAAAGTCGAATTCCCCggtaaaattga aattgataaaaatacagCTTCAAACCAGACAGCTAAAGGAAGTGTTACTC TCCACGAGACTTCACAACCTGCAGATCATCTTAGCAATGTTGAAAATGTA GAGAATCAATACGTTTCGAGCCAGTCAACTAAAGAAAATGCAACCCTTGA GGTGACATCAAACCATACAAACCTCATCCCTTCAAACGTTACCACAAGCA GTGTAGATTCAAACCATACAAACCCCATCCCTTCAAACGTTACCACAAGC AGTGTAGATTCAAAGCTTTCTTCCTCGAATTTCAATACAACTAtaacaaa caaaaagaaaacttcaaattaCTCTGCAAATGTAAATCACCACAACATAT CGAAGATTGTGTCATCTAAAAACCATAACTC Run BLAST on NCBI protein sequence of TCONS_00016141-protein >TCONS_00016141-protein ID=TCONS_00016141-protein|Name=TCONS_00016141-protein|organism=Clytia hemisphaerica|type=polypeptide|length=559bp
YGYSHYFHPVHHYRHHLHRIGHHHDYDGDFDDDEDDDEEFFRPYISHVEP IDDEIDPIKRIGPIDPIDPMEPIERIDEIEPIEPIQNIESMEPIERAEQM EGLVPMRSIEEEDGARKNHIPLKYNKTGADRKMKLSMNHRRHLSKHNLTR HLYHLAPHVEEAPLIRNPNDHPNVTSDRVLMLPSGTAVVNLDGYQHHRAI VGARGAMGVDHPATGATGAEYAALGAIDSRIGVGDPAKGVIDPATGVTDP AQGVTKEAVKAEGAGPNTKLEPGVKLPLNEGFKKDHVCKTNDTKKGVMKS LNETLCHSNMTFKKSIENNNVNLSNSTLGAKVQNFKSKGNFTHKNELKSL ESDDIPNHQGKTTVLDRDFGNKTVNVMSGNMTDVNKNQTMKHPVTSENIS KSKASIKITKTKQLNNDKNQTSSLKVEFPGKIEIDKNTASNQTAKGSVTL HETSQPADHLSNVENVENQYVSSQSTKENATLEVTSNHTNLIPSNVTTSS VDSNHTNPIPSNVTTSSVDSKLSSSNFNTTITNKKKTSNYSANVNHHNIS KIVSSKNHN Run BLAST on NCBI transcript from alignment at sc0000226:236525..239167- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016141 ID=TCONS_00016141|Name=TCONS_00016141|organism=Clytia hemisphaerica|type=transcript|length=2643bp|location=Sequence derived from alignment at sc0000226:236525..239167- (Clytia hemisphaerica) ATTATGGGTACAGTCATTATTTCCACCCTGTACACCACTACCGGCACCAT
TTACATCGTATCGGACATCACCATGACTACGATGGTGATTTTGACGACGA
TGAGGATGATGACGAAGAATTTTTCCGTCCTTACATTTCTCACGTCGAGC
CTATTGATGATGAAATTGACCCAATAAAACGTATTGGACCTATTGACCCA
ATCGACCCTATGGAGCCAATTGAAAGGTATTATAATTCAGACCACATTGC
TTTCTGAGTCAATAAACAGGTCCTAATTGATCCAGAGATTTTCTTAGAAT
AGCACAGACATTCTTGATTCCTTATTATGATGCGAGTGTAAACTTCCGTT
TCATTGTTACAAACTTTGCCCCTATTTTGACTATTTTGTTTGTTTTTGTG
TCAATCCTTAAAGTGACAGGAACCACGTGTAAAACGAAACAATAAAAAAA
TATATCAAAACAAAATTCTAATAATCGGAATTTTTATTTCAACATTTCGA
TATTTCATTTATTTCGATTCGTGTCACGTTGCATACGCAGGTTGTTTTCA
AAATTTGTAACTACGCAGTGAGCTCTCTCTAATTCGATCATCTTTCATTC
AAATCTTTTTATAATTTGAACTACTTTTAGTCCTTGTAAAGGATAAAACA
GTACAAAAACTTTCTATAATTCGAATCTCTCTATCCATAATTCGAACAAA
TAAGACTTCCCGTCGAGTTCGAATTCTTGATATACGTTAGTCAAGATTAC
GTCATTTGTCCCTATCGAAAATAGCAACACATGGGTCAAATTCCGGTTTT
TCCGGGTGTTTCCGATATGAAAAAGACGTAATCTTGACTAACGCATTTCA
AGAATTAGCGAAAGTTAACTACCGTATTTCTATGGCCCTTTAACCTTGAA
ACTTCCTTTTCAACCAGAATCGACGAGATTGAACCGATCGAACCGATCCA
GAACATTGAATCGATGGAACCGATCGAACGAGCCGAACAAATGGAAGGAT
TAGTTCCCATGAGGTCTATCGAAGAAGAAGATGGTGCAAGGAAAAATCAT
ATTCCACTCAAATATAACAAAACTGGTGCTGATAGAAAGATGAAATTAAG
GTACCAATATTTCTCAAGACGTGAAATTGAATCAGGGCTCTATCTGCTAT
TCAAATTAACCCACATAGTTTAAACTTCAAGGCAATACTATGCAGGCGTT
TGAAACGTCGAAACGATAACACGTGTCAGCTGAAATTTTCTTTTAAATGG
AGATTGAAGCAATGAATTCTATAGTTCAAAGAGGGATTTAGTGGGACCAT
ATATTTGAAAAACTATAAATAGGTACCTTAAGATTTTATCATCGATGTAA
AGTCATTCTCCACTTTTTCAGTATGAATCACCGAAGACATTTATCAAAAC
ACAATTTGACACGCCATCTTTACCATCTCGCACCACACGTGGAAGAAGCA
CCTTTAATACGAAATCCAAACGATCATCCCAACGTGACCAGTGACCGAGT
CTTAATGTTACCAAGTGGTACCGCTGTCGTTAATCTAGATGGTTATCAAC
ATCACAGGGCAATAGTGGGAGCACGTGGGGCCATGGGCGTGGACCATCCC
GCGACAGGGGCAACTGGTGCAGAATATGCAGCCCTCGGGGCCATCGATAG
CCGTATAGGGGTTGGTGATCCAGCTAAAGGGGTCATAGACCCAGCAACAG
GTGTTACAGATCCTGCACAAGGTGTGACCAAGGAAGCCGTAAAAGCTGAA
GGTGCAGGCCCTAACACCAAATTGGAACCAGGCGTAAAGTTGCCACTCAA
TGAAGGATTTAAGAAAGATCATGTCTGTAAAACGAATGATACTAAAAAAG
GGGTGATGAAAAGTTTGAATGAGACTCTATGTCATTCAAACATGACTTTC
AAGAAAAGCATTGAAAATAATAATGTGAATTTAAGTAATTCAACTTTGGG
TGCGAAGGTCCAGAATTTCAAAAGTAAAGGAAATTTCACACACAAGAATG
AACTCAAATCACTCGAGAGCGATGACATTCCAAACCACCAAGGAAAAACA
ACAGTACTGGATAGAGACTTTGGTAACAAAACAGTGAATGTTATGAGTGG
AAATATGACCGATGTGAACAAGAATCAAACAATGAAACATCCTGTGACCT
CGGAGAACATTTCAAAATCGAAAGCGTCCATCAAAATAACAAAAACGAAA
CAATTGAACAACGATAAGAACCAGACTTCAAGTTTAAAAGTCGAATTCCC
CGGTAAAATTGAAATTGATAAAAATACAGCTTCAAACCAGACAGCTAAAG
GAAGTGTTACTCTCCACGAGACTTCACAACCTGCAGATCATCTTAGCAAT
GTTGAAAATGTAGAGAATCAATACGTTTCGAGCCAGTCAACTAAAGAAAA
TGCAACCCTTGAGGTGACATCAAACCATACAAACCTCATCCCTTCAAACG
TTACCACAAGCAGTGTAGATTCAAACCATACAAACCCCATCCCTTCAAAC
GTTACCACAAGCAGTGTAGATTCAAAGCTTTCTTCCTCGAATTTCAATAC
AACTATAACAAACAAAAAGAAAACTTCAAATTACTCTGCAAATGTAAATC
ACCACAACATATCGAAGATTGTGTCATCTAAAAACCATAACTC Coding sequence (CDS) from alignment at sc0000226:236525..239167- >TCONS_00016141 ID=TCONS_00016141|Name=TCONS_00016141|organism=Clytia hemisphaerica|type=CDS|length=5031bp|location=Sequence derived from alignment at sc0000226:236525..239167- (Clytia hemisphaerica) TATGAATCACCGAAGACATTTATCAAAACACAATTTGACACGCCATCTTT ACCATCTCGCACCACACGTGGAAGAAGCACCTTTAATACGAAATCCAAAC GATCATCCCAACGTGACCAGTGACCGAGTCTTAATGTTACCAAGTGGTAC CGCTGTCGTTAATCTAGATGGTTATCAACATCACAGGGCAATAGTGGGAG CACGTGGGGCCATGGGCGTGGACCATCCCGCGACAGGGGCAACTGGTGCA GAATATGCAGCCCTCGGGGCCATCGATAGCCGTATAGGGGTTGGTGATCC AGCTAAAGGGGTCATAGACCCAGCAACAGGTGTTACAGATCCTGCACAAG GTGTGACCAAGGAAGCCGTAAAAGCTGAAGGTGCAGGCCCTAACACCAAA TTGGAACCAGGCGTAAAGTTGCCACTCAATGAAGGATTTAAGAAAGATCA TGTCTGTAAAACGAATGATACTAAAAAAGGGGTGATGAAAAGTTTGAATG AGACTCTATGTCATTCAAACATGACTTTCAAGAAAAGCATTGAAAATAAT AATGTGAATTTAAGTAATTCAACTTTGGGTGCGAAGGTCCAGAATTTCAA AAGTAAAGGAAATTTCACACACAAGAATGAACTCAAATCACTCGAGAGCG ATGACATTCCAAACCACCAAGGAAAAACAACAGTACTGGATAGAGACTTT GGTAACAAAACAGTGAATGTTATGAGTGGAAATATGACCGATGTGAACAA GAATCAAACAATGAAACATCCTGTGACCTCGGAGAACATTTCAAAATCGA AAGCGTCCATCAAAATAACAAAAACGAAACAATTGAACAACGATAAGAAC CAGACTTCAAGTTTAAAAGTCGAATTCCCCGGTAAAATTGAAATTGATAA AAATACAGCTTCAAACCAGACAGCTAAAGGAAGTGTTACTCTCCACGAGA CTTCACAACCTGCAGATCATCTTAGCAATGTTGAAAATGTAGAGAATCAA TACGTTTCGAGCCAGTCAACTAAAGAAAATGCAACCCTTGAGGTGACATC AAACCATACAAACCTCATCCCTTCAAACGTTACCACAAGCAGTGTAGATT CAAACCATACAAACCCCATCCCTTCAAACGTTACCACAAGCAGTGTAGAT TCAAAGCTTTCTTCCTCGAATTTCAATACAACTATAACAAACAAAAAGAA AACTTCAAATTACTCTGCAAATGTAAATCACCACAACATATCGAAGATTG TGTCATCTAAAAACCATAACAATCGACGAGATTGAACCGATCGAACCGAT CCAGAACATTGAATCGATGGAACCGATCGAACGAGCCGAACAAATGGAAG GATTAGTTCCCATGAGGTCTATCGAAGAAGAAGATGGTGCAAGGAAAAAT CATATTCCACTCAAATATAACAAAACTGGTGCTGATAGAAAGATGAAATT AAGTATGGGTACAGTCATTATTTCCACCCTGTACACCACTACCGGCACCA TTTACATCGTATCGGACATCACCATGACTACGATGGTGATTTTGACGACG ATGAGGATGATGACGAAGAATTTTTCCGTCCTTACATTTCTCACGTCGAG CCTATTGATGATGAAATTGACCCAATAAAACGTATTGGACCTATTGACCC AATCGACCCTATGGAGCCAATTGAAAGTATGAATCACCGAAGACATTTAT CAAAACACAATTTGACACGCCATCTTTACCATCTCGCACCACACGTGGAA GAAGCACCTTTAATACGAAATCCAAACGATCATCCCAACGTGACCAGTGA CCGAGTCTTAATGTTACCAAGTGGTACCGCTGTCGTTAATCTAGATGGTT ATCAACATCACAGGGCAATAGTGGGAGCACGTGGGGCCATGGGCGTGGAC CATCCCGCGACAGGGGCAACTGGTGCAGAATATGCAGCCCTCGGGGCCAT CGATAGCCGTATAGGGGTTGGTGATCCAGCTAAAGGGGTCATAGACCCAG CAACAGGTGTTACAGATCCTGCACAAGGTGTGACCAAGGAAGCCGTAAAA GCTGAAGGTGCAGGCCCTAACACCAAATTGGAACCAGGCGTAAAGTTGCC ACTCAATGAAGGATTTAAGAAAGATCATGTCTGTAAAACGAATGATACTA AAAAAGGGGTGATGAAAAGTTTGAATGAGACTCTATGTCATTCAAACATG ACTTTCAAGAAAAGCATTGAAAATAATAATGTGAATTTAAGTAATTCAAC TTTGGGTGCGAAGGTCCAGAATTTCAAAAGTAAAGGAAATTTCACACACA AGAATGAACTCAAATCACTCGAGAGCGATGACATTCCAAACCACCAAGGA AAAACAACAGTACTGGATAGAGACTTTGGTAACAAAACAGTGAATGTTAT GAGTGGAAATATGACCGATGTGAACAAGAATCAAACAATGAAACATCCTG TGACCTCGGAGAACATTTCAAAATCGAAAGCGTCCATCAAAATAACAAAA ACGAAACAATTGAACAACGATAAGAACCAGACTTCAAGTTTAAAAGTCGA ATTCCCCGGTAAAATTGAAATTGATAAAAATACAGCTTCAAACCAGACAG CTAAAGGAAGTGTTACTCTCCACGAGACTTCACAACCTGCAGATCATCTT AGCAATGTTGAAAATGTAGAGAATCAATACGTTTCGAGCCAGTCAACTAA AGAAAATGCAACCCTTGAGGTGACATCAAACCATACAAACCTCATCCCTT CAAACGTTACCACAAGCAGTGTAGATTCAAACCATACAAACCCCATCCCT TCAAACGTTACCACAAGCAGTGTAGATTCAAAGCTTTCTTCCTCGAATTT CAATACAACTATAACAAACAAAAAGAAAACTTCAAATTACTCTGCAAATG TAAATCACCACAACATATCGAAGATTGTGTCATCTAAAAACCATAACAAT CGACGAGATTGAACCGATCGAACCGATCCAGAACATTGAATCGATGGAAC CGATCGAACGAGCCGAACAAATGGAAGGATTAGTTCCCATGAGGTCTATC GAAGAAGAAGATGGTGCAAGGAAAAATCATATTCCACTCAAATATAACAA AACTGGTGCTGATAGAAAGATGAAATTAAGTATGGGTACAGTCATTATTT CCACCCTGTACACCACTACCGGCACCATTTACATCGTATCGGACATCACC ATGACTACGATGGTGATTTTGACGACGATGAGGATGATGACGAAGAATTT TTCCGTCCTTACATTTCTCACGTCGAGCCTATTGATGATGAAATTGACCC AATAAAACGTATTGGACCTATTGACCCAATCGACCCTATGGAGCCAATTG AAAGTATGAATCACCGAAGACATTTATCAAAACACAATTTGACACGCCAT CTTTACCATCTCGCACCACACGTGGAAGAAGCACCTTTAATACGAAATCC AAACGATCATCCCAACGTGACCAGTGACCGAGTCTTAATGTTACCAAGTG GTACCGCTGTCGTTAATCTAGATGGTTATCAACATCACAGGGCAATAGTG GGAGCACGTGGGGCCATGGGCGTGGACCATCCCGCGACAGGGGCAACTGG TGCAGAATATGCAGCCCTCGGGGCCATCGATAGCCGTATAGGGGTTGGTG ATCCAGCTAAAGGGGTCATAGACCCAGCAACAGGTGTTACAGATCCTGCA CAAGGTGTGACCAAGGAAGCCGTAAAAGCTGAAGGTGCAGGCCCTAACAC CAAATTGGAACCAGGCGTAAAGTTGCCACTCAATGAAGGATTTAAGAAAG ATCATGTCTGTAAAACGAATGATACTAAAAAAGGGGTGATGAAAAGTTTG AATGAGACTCTATGTCATTCAAACATGACTTTCAAGAAAAGCATTGAAAA TAATAATGTGAATTTAAGTAATTCAACTTTGGGTGCGAAGGTCCAGAATT TCAAAAGTAAAGGAAATTTCACACACAAGAATGAACTCAAATCACTCGAG AGCGATGACATTCCAAACCACCAAGGAAAAACAACAGTACTGGATAGAGA CTTTGGTAACAAAACAGTGAATGTTATGAGTGGAAATATGACCGATGTGA ACAAGAATCAAACAATGAAACATCCTGTGACCTCGGAGAACATTTCAAAA TCGAAAGCGTCCATCAAAATAACAAAAACGAAACAATTGAACAACGATAA GAACCAGACTTCAAGTTTAAAAGTCGAATTCCCCGGTAAAATTGAAATTG ATAAAAATACAGCTTCAAACCAGACAGCTAAAGGAAGTGTTACTCTCCAC GAGACTTCACAACCTGCAGATCATCTTAGCAATGTTGAAAATGTAGAGAA TCAATACGTTTCGAGCCAGTCAACTAAAGAAAATGCAACCCTTGAGGTGA CATCAAACCATACAAACCTCATCCCTTCAAACGTTACCACAAGCAGTGTA GATTCAAACCATACAAACCCCATCCCTTCAAACGTTACCACAAGCAGTGT AGATTCAAAGCTTTCTTCCTCGAATTTCAATACAACTATAACAAACAAAA AGAAAACTTCAAATTACTCTGCAAATGTAAATCACCACAACATATCGAAG ATTGTGTCATCTAAAAACCATAACAATCGACGAGATTGAACCGATCGAAC CGATCCAGAACATTGAATCGATGGAACCGATCGAACGAGCCGAACAAATG GAAGGATTAGTTCCCATGAGGTCTATCGAAGAAGAAGATGGTGCAAGGAA AAATCATATTCCACTCAAATATAACAAAACTGGTGCTGATAGAAAGATGA AATTAAGTATGGGTACAGTCATTATTTCCACCCTGTACACCACTACCGGC ACCATTTACATCGTATCGGACATCACCATGACTACGATGGTGATTTTGAC GACGATGAGGATGATGACGAAGAATTTTTCCGTCCTTACATTTCTCACGT CGAGCCTATTGATGATGAAATTGACCCAATAAAACGTATTGGACCTATTG ACCCAATCGACCCTATGGAGCCAATTGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00016141-exon-sc0000226-1575043694:238942..239167 | TCONS_00016141-exon-sc0000226-1575043694:238942..239167 | Clytia hemisphaerica | exon |
| TCONS_00016141-exon-sc0000226-1575043694:238068..238250 | TCONS_00016141-exon-sc0000226-1575043694:238068..238250 | Clytia hemisphaerica | exon |
| TCONS_00016141-exon-sc0000226-1575043694:236525..237796 | TCONS_00016141-exon-sc0000226-1575043694:236525..237796 | Clytia hemisphaerica | exon |
| TCONS_00016141-exon-sc0000226-1510915933:238942..239167 | TCONS_00016141-exon-sc0000226-1510915933:238942..239167 | Clytia hemisphaerica | exon |
| TCONS_00016141-exon-sc0000226-1510915933:238068..238250 | TCONS_00016141-exon-sc0000226-1510915933:238068..238250 | Clytia hemisphaerica | exon |
| TCONS_00016141-exon-sc0000226-1510915933:236525..237796 | TCONS_00016141-exon-sc0000226-1510915933:236525..237796 | Clytia hemisphaerica | exon |
| TCONS_00016141-exon-sc0000226-1491911889:238942..239167 | TCONS_00016141-exon-sc0000226-1491911889:238942..239167 | Clytia hemisphaerica | exon |
| TCONS_00016141-exon-sc0000226-1491911889:238068..238250 | TCONS_00016141-exon-sc0000226-1491911889:238068..238250 | Clytia hemisphaerica | exon |
| TCONS_00016141-exon-sc0000226-1491911889:236525..237796 | TCONS_00016141-exon-sc0000226-1491911889:236525..237796 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000226 | supercontig | sc0000226:236525..239167 - |
Blast
The following BLAST results are available for this feature:
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