TCONS_00016140 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016140
Unique NameTCONS_00016140
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016140 ID=TCONS_00016140|Name=TCONS_00016140|organism=Clytia hemisphaerica|type=transcript|length=1293bp
AGCGAAAacaaacttctcgtgtccccaatcCTTAAGTGTGAATTGTATTT
TGCTACTAATCATGTGGAACCACTCTCAAGAGAATTAGACGAACTTCGCT
GACATGGTTTCTATATTGTGGTAAAAAAGAGTGCAGAGAatggatttaaa
aattttttaaatcgatattcctgaaaagttttttttattttgcaataTAA
TCATCTAACACGACAAAATGTCTTACAAATTATAGCAAGAACGATTacac
aaattcaaaaaaaatgtcttgcTTTCGAGCAGTACGATACTCGGTGGCTG
TTCTGGTTGTACTGACACTTGGCTTGTTCGTGGCAGCTGGTGTGCTAGAT
TATTGGTGGGTCAAAAAAATATTCAGTTCAGAATATAGAAATGGTTTATG
GCGTAATTGTAATCCATTAACTGGATGTAAAGTCCGAAAGAATTTGATGA
AACTGAAAGATGGAATTGATTTGAATTTGGACATCATCATTCTAGCGTTA
GCTGGAGGTGCTCTTGGTGCCTTGATTCATCTTATTCTCATCTTGAGGAC
CATGTGTCAAGGAAAACCATCAAAGAAATCGATATTGGTTGGGTCTATCT
TCCTTTTTATCGGAGTTGGATCAGGAATTTTCGGATTGGTTTGGGCTTTA
CTAAAAGTAAGCGACAAAGATCAAAGTTATGCAATGTTTTGTTTGTATGG
TGCTAATGGTTTAGGATTGATTACCTTCGTCCTATCATGTGTTCTCTTAT
GCACACGCGTCACCCGCTCAAGTTATAACGATGACGAGATTGCAATGCTA
CAACGCTGATCACAACTAAATTTCCAGTAATTTAAAATGATTGTAGTAGT
AGATATGTGTATTATAAATCATCTTTGGATATACATGGTGATACAATTCA
GCTCATCTGCCATCCACCCCGGCCCACGATCAATGTTGCTATTATATGAA
ACGCTCGTAGGTTGTTCTTATTCAACCAACACTGCCTTTTAGGAGGATGG
GATGGGAAAAACCTCACGAAGTCTTTCAGATGATTGTAAGTTCAAAATCA
ATCaaactaaaaaagttttcaaCGTTTTTAAGGCCAACAGAACCTGATCT
ATTAGCTATGAATGAGGAGGGACATATTATTCGTTATGCATGATTATTGA
CTGAGGATGCTCATAATTTtatctatttctattttataTAATCAAAATTA
TGAAGAAGTACTTTTCCCAGCAATTAAGGCTACAATTACATGTCGCTTtg
ttaattgaaacattcttctctTCTCGAGGTATATTTAGACACC
Run BLAST on NCBI

protein sequence of TCONS_00016140-protein

>TCONS_00016140-protein ID=TCONS_00016140-protein|Name=TCONS_00016140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MSCFRAVRYSVAVLVVLTLGLFVAAGVLDYWWVKKIFSSEYRNGLWRNCN
PLTGCKVRKNLMKLKDGIDLNLDIIILALAGGALGALIHLILILRTMCQG
KPSKKSILVGSIFLFIGVGSGIFGLVWALLKVSDKDQSYAMFCLYGANGL
GLITFVLSCVLLCTRVTRSSYNDDEIAMLQR
Run BLAST on NCBI

transcript from alignment at sc0000226:226834..230434-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016140 ID=TCONS_00016140|Name=TCONS_00016140|organism=Clytia hemisphaerica|type=transcript|length=3601bp|location=Sequence derived from alignment at sc0000226:226834..230434- (Clytia hemisphaerica)
AGCGAAAACAAACTTCTCGTGTCCCCAATCCTTAAGTGTGAATTGTATTT
TGCTACTAATCATGTGGAACCACTCTCAAGAGAATTAGACGAACTTCGCT
GACATGGTTTCTATATTGTGGTAAAAAAGAGTGCAGAGAATGGATTTAAA
AATTTTTTAAATCGATATTCCTGAAAAGTTTTTTTTATTTTGCAATATAA
TCATCTAACACGACAAAATGTCTTACAAATTATAGCAAGAACGATTACAC
AAATTCAAAAAAAATGTCTTGCTTTCGAGCAGTACGATACTCGGTGGCTG
TTCTGGTTGTACTGACACTTGGCTTGTTCGTGGCAGCTGGTGTGCTAGAT
TATTGGTGGGTCAAAAAAATATTCAGTTCAGAATATAGAAATGGTATGAG
CTTTCTTTATTTTTTTTTCATATTTTGTAAGTAATCTTGTCTTGTGACCG
CGTTTGACGGCCGCCACCCAAAGACTCAGAGAGGCATGAATTACCAGGAG
TCTTTGATATGGTCCAGGGATTGTACTCACAACCTTGTGCACCCAGGGAG
GGTCAGTAATAAAATCTAGGACATCATGATGTTTAGTGACGTGGTGGTAT
ACCCAAAAAAACATAAAAATCCTTTTCGTACCATAGGATACTAAAATACC
AAAAAGGTGGTATCCAAAATTTGAGAATTTCTTTGGTAAATTGGTACTAA
ATTAGTGATTTTCATCATTTTTCATCAACCTTTTTCAGAATTTTTCGTGA
TTTTCCAAAAAATTTAAATAAATTTTTCTCACGTTCATTTCCCAAGTTCA
ATTATCTTTGCATTCAGTCAAGTGTTTAATGTTTGCCTAATTCTTAAAGC
AGCATTATTTAAAAGTATCAATTTTTGTTAAAAATGAATATTATGTTGCA
AAAATCAACACTCTTGAGAAAAATGATCCGGAGAAGACAAAATTTGTCCT
GAAAGGACCAAAATTGGGTGATCTCTGTGTGTTAAAAATGTCCCCAAAAA
TTTTAGTACTAAAATAGGTACTAAAATACTGCATTTCTAAAAAAGGGTGG
TGGTATGCAATAAGTTCTCAAAAATCCTTTTAGTATTCATATATGTCTGA
GATTTTAGTACCAACCCTCCCCCCTGGCGCACCATAGCCGAATGTTCTGC
TTTTACGCTACGGATAATATTTTCTTAATACTACTTCAGTGACACTTTCT
TGTCTGATTCCTAAGCAGTTGCGAACGAAATACCATTGCTATTGAGCTCA
AAATCCCGAATGTCCTGGATGATAGGAAATGAAGCCACTTATTTCCCATC
TGAAACGCGTGACCCACGTGATTTTTACACAAACGCCGGGTTGAAGGTGA
AATCCATTACCCGATGGATGCATGATATCGTCTAGCATGAAAACAAAGAA
AACCCTAGATTAAAACCATCCTTTTGAAAGCGGCGCTATTCTCAAGGCTT
CATTCATTTTTGCTTGAGAAAGATTTCTCTCTAGGCCTTCGGGCTTCGAA
CTAAATAAATCAAAATCTAGGCTCTTTGTATAAGATTGTATTAGGGTTTG
TTTCACAAATATTCTCTAAAACAATAATATAAGTGTAATTTTGATTTACT
TTAAGGTTTATGGCGTAATTGTAATCCATTAACTGGATGTAAAGTCCGAA
AGAATTTGATGAAACTGAAAGATGGAATTGATTTGAGTAAGTGCTTCACT
AGGAAGTGTTTTTTGTTTTGATTTGGAATTCCTCCAAGCCAACCTGCAAG
TTTTTGGTACCCTCCTTGGTAAGGGGACTTTTGAGCTCTTGAACCTTCCA
GATACCTGGAAAAGTTCATCTATAATGATTGTCTCACTTTTTACACCCGA
GGTCTTCATCTTTAAAGATCAAGGGGGTCCAGATTTTAAGTATAAAGTTC
CAGATGATAAGGTTGTGTACGACAGAGGTGGGTTTTCAGATGGGTTCCCA
GGTTCTTGGTAGAGAAGGAACCTTTTTTGCTAGGGGGAAATACCGGGGTA
ATAAGCCAAATAGGATGATATCCTGTATCTCTGTATCCAATAGTCAAAAA
TCTTTAGGGTCAAGTCCCACAAAAATGACTTTATCAATGACCCCATATTT
TTTGAAGACATTGAATTGTAGAGTTTTATAGAGAACGTTTTTCAATCATT
GAGATTGCTATCCTGGATGCATGAGTCTTTGAGTATGAGATTATTTCAAA
ACTCGTTTTCTTTACTCAAACCAGTAACGCCATACAAAATTTCCTCTGAA
ATAGTCCATTTATCAAAAGTGGAAAAACATATATTAGTCAAGCTTTGCCC
TCTATCTCTAGTTGTGCATGTATTTTCTCAAAACGATTGTGTCATCTTTC
TAGATTTGGACATCATCATTCTAGCGTTAGCTGGAGGTGCTCTTGGTGCC
TTGATTCATCTTATTCTCATCTTGAGGACCATGTGTCAAGGAAAACCATC
AAAGAAATCGATATTGGTTGGGTCTATCTTCCTTTTTATCGGAGGTAAGG
CTTACACAAAAAAAAGAAAATTCGTGGTCGGCTTTTGTCTTGAGACAAAA
CAAAATGTCCCAATGCGCTTGTAAAGTTTTGATTTATTTCTGACTTCTTT
TTTAATACAAACTTCAATGTTGCACCAAAGCTTGTAGCATGGGAACCTAA
TTTCGTACCCTTTTTAAAAATATTAGGTTTTTGCCCATCTTAAAGCAGTC
AGGAGCTATGGCCATTAGTTTGGGACTTGGCACTATGATCACTGAGAAGC
ATATATTTTTCAAATTCAGAAAATAGATGTCCTGATTAAAATTTGAACTT
AACATCACTTCTTAAAACTCTCTCAGCATTTCACTTTTTGTAAAGATAAA
TACCCTCTTTTTCAGTTGGATCAGGAATTTTCGGATTGGTTTGGGCTTTA
CTAAAAGTAAGCGACAAAGATCAAAGTTATGCAATGTTTTGTTTGTATGG
TGCTAATGGTTTAGGATTGATTACCTTCGTCCTATCATGTGTTCTCTTAT
GCACACGCGTCACCCGCTCAAGTTATAACGATGACGAGATTGCAATGCTA
CAACGCTGATCACAACTAAATTTCCAGTAATTTAAAATGATTGTAGTAGT
AGATATGTGTATTATAAATCATCTTTGGATATACATTATTATTGTGTTGT
ATACAAGCTCACAGGCCCGAGGTGGACCTCTACACCGTATACATGGTGAT
ACAATTCAGCTCATCTGCCATCCACCCCGGCCCACGATCAATGTTGCTAT
TATATGAAACGCTCGTAGGTTGTTCTTATTCAACCAACACTGCCTTTTAG
GAGGATGGGATGGGAAAAACCTCACGAAGTCTTTCAGATGATTGTAAGTT
CAAAATCAATCAAACTAAAAAAGTTTTCAACGTTTTTAAGGCCAACAGAA
CCTGATCTATTAGCTATGAATGAGGAGGGACATATTATTCGTTATGCATG
ATTATTGACTGAGGATGCTCATAATTTTATCTATTTCTATTTTATATAAT
CAAAATTATGAAGAAGTACTTTTCCCAGCAATTAAGGCTACAATTACATG
TCGCTTTGTTAATTGAAACATTCTTCTCTTCTCGAGGTATATTTAGACAC
C

Coding sequence (CDS) from alignment at sc0000226:226834..230434-

>TCONS_00016140 ID=TCONS_00016140|Name=TCONS_00016140|organism=Clytia hemisphaerica|type=CDS|length=2184bp|location=Sequence derived from alignment at sc0000226:226834..230434- (Clytia hemisphaerica)
TTGGATCAGGAATTTTCGGATTGGTTTGGGCTTTACTAAAAGTAAGCGAC
AAAGATCAAAGTTATGCAATGTTTTGTTTGTATGGTGCTAATGGTTTAGG
ATTGATTACCTTCGTCCTATCATGTGTTCTCTTATGCACACGCGTCACCC
GCTCAAGTTATAACGATGACGAGATTGCAATGCTACAACGCTGAATTTGG
ACATCATCATTCTAGCGTTAGCTGGAGGTGCTCTTGGTGCCTTGATTCAT
CTTATTCTCATCTTGAGGACCATGTGTCAAGGAAAACCATCAAAGAAATC
GATATTGGTTGGGTCTATCTTCCTTTTTATCGGAGGTTTATGGCGTAATT
GTAATCCATTAACTGGATGTAAAGTCCGAAAGAATTTGATGAAACTGAAA
GATGGAATTGATTTGAATGTCTTGCTTTCGAGCAGTACGATACTCGGTGG
CTGTTCTGGTTGTACTGACACTTGGCTTGTTCGTGGCAGCTGGTGTGCTA
GATTATTGGTGGGTCAAAAAAATATTCAGTTCAGAATATAGAAATGTTGG
ATCAGGAATTTTCGGATTGGTTTGGGCTTTACTAAAAGTAAGCGACAAAG
ATCAAAGTTATGCAATGTTTTGTTTGTATGGTGCTAATGGTTTAGGATTG
ATTACCTTCGTCCTATCATGTGTTCTCTTATGCACACGCGTCACCCGCTC
AAGTTATAACGATGACGAGATTGCAATGCTACAACGCTGAATTTGGACAT
CATCATTCTAGCGTTAGCTGGAGGTGCTCTTGGTGCCTTGATTCATCTTA
TTCTCATCTTGAGGACCATGTGTCAAGGAAAACCATCAAAGAAATCGATA
TTGGTTGGGTCTATCTTCCTTTTTATCGGAGGTTTATGGCGTAATTGTAA
TCCATTAACTGGATGTAAAGTCCGAAAGAATTTGATGAAACTGAAAGATG
GAATTGATTTGAATGTCTTGCTTTCGAGCAGTACGATACTCGGTGGCTGT
TCTGGTTGTACTGACACTTGGCTTGTTCGTGGCAGCTGGTGTGCTAGATT
ATTGGTGGGTCAAAAAAATATTCAGTTCAGAATATAGAAATGTTGGATCA
GGAATTTTCGGATTGGTTTGGGCTTTACTAAAAGTAAGCGACAAAGATCA
AAGTTATGCAATGTTTTGTTTGTATGGTGCTAATGGTTTAGGATTGATTA
CCTTCGTCCTATCATGTGTTCTCTTATGCACACGCGTCACCCGCTCAAGT
TATAACGATGACGAGATTGCAATGCTACAACGCTGAATTTGGACATCATC
ATTCTAGCGTTAGCTGGAGGTGCTCTTGGTGCCTTGATTCATCTTATTCT
CATCTTGAGGACCATGTGTCAAGGAAAACCATCAAAGAAATCGATATTGG
TTGGGTCTATCTTCCTTTTTATCGGAGGTTTATGGCGTAATTGTAATCCA
TTAACTGGATGTAAAGTCCGAAAGAATTTGATGAAACTGAAAGATGGAAT
TGATTTGAATGTCTTGCTTTCGAGCAGTACGATACTCGGTGGCTGTTCTG
GTTGTACTGACACTTGGCTTGTTCGTGGCAGCTGGTGTGCTAGATTATTG
GTGGGTCAAAAAAATATTCAGTTCAGAATATAGAAATGTTGGATCAGGAA
TTTTCGGATTGGTTTGGGCTTTACTAAAAGTAAGCGACAAAGATCAAAGT
TATGCAATGTTTTGTTTGTATGGTGCTAATGGTTTAGGATTGATTACCTT
CGTCCTATCATGTGTTCTCTTATGCACACGCGTCACCCGCTCAAGTTATA
ACGATGACGAGATTGCAATGCTACAACGCTGAATTTGGACATCATCATTC
TAGCGTTAGCTGGAGGTGCTCTTGGTGCCTTGATTCATCTTATTCTCATC
TTGAGGACCATGTGTCAAGGAAAACCATCAAAGAAATCGATATTGGTTGG
GTCTATCTTCCTTTTTATCGGAGGTTTATGGCGTAATTGTAATCCATTAA
CTGGATGTAAAGTCCGAAAGAATTTGATGAAACTGAAAGATGGAATTGAT
TTGAATGTCTTGCTTTCGAGCAGTACGATACTCGGTGGCTGTTCTGGTTG
TACTGACACTTGGCTTGTTCGTGGCAGCTGGTGTGCTAGATTATTGGTGG
GTCAAAAAAATATTCAGTTCAGAATATAGAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009016XLOC_009016Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016140-exon-sc0000226-1575043694:230042..230434TCONS_00016140-exon-sc0000226-1575043694:230042..230434Clytia hemisphaericaexon
TCONS_00016140-exon-sc0000226-1575043694:228749..228829TCONS_00016140-exon-sc0000226-1575043694:228749..228829Clytia hemisphaericaexon
TCONS_00016140-exon-sc0000226-1575043694:227941..228081TCONS_00016140-exon-sc0000226-1575043694:227941..228081Clytia hemisphaericaexon
TCONS_00016140-exon-sc0000226-1575043694:227301..227569TCONS_00016140-exon-sc0000226-1575043694:227301..227569Clytia hemisphaericaexon
TCONS_00016140-exon-sc0000226-1575043694:226834..227242TCONS_00016140-exon-sc0000226-1575043694:226834..227242Clytia hemisphaericaexon
TCONS_00016140-exon-sc0000226-1510915933:230042..230434TCONS_00016140-exon-sc0000226-1510915933:230042..230434Clytia hemisphaericaexon
TCONS_00016140-exon-sc0000226-1510915933:228749..228829TCONS_00016140-exon-sc0000226-1510915933:228749..228829Clytia hemisphaericaexon
TCONS_00016140-exon-sc0000226-1510915933:227941..228081TCONS_00016140-exon-sc0000226-1510915933:227941..228081Clytia hemisphaericaexon
TCONS_00016140-exon-sc0000226-1510915933:227301..227569TCONS_00016140-exon-sc0000226-1510915933:227301..227569Clytia hemisphaericaexon
TCONS_00016140-exon-sc0000226-1510915933:226834..227242TCONS_00016140-exon-sc0000226-1510915933:226834..227242Clytia hemisphaericaexon
TCONS_00016140-exon-sc0000226-1491911889:230042..230434TCONS_00016140-exon-sc0000226-1491911889:230042..230434Clytia hemisphaericaexon
TCONS_00016140-exon-sc0000226-1491911889:228749..228829TCONS_00016140-exon-sc0000226-1491911889:228749..228829Clytia hemisphaericaexon
TCONS_00016140-exon-sc0000226-1491911889:227941..228081TCONS_00016140-exon-sc0000226-1491911889:227941..228081Clytia hemisphaericaexon
TCONS_00016140-exon-sc0000226-1491911889:227301..227569TCONS_00016140-exon-sc0000226-1491911889:227301..227569Clytia hemisphaericaexon
TCONS_00016140-exon-sc0000226-1491911889:226834..227242TCONS_00016140-exon-sc0000226-1491911889:226834..227242Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016140-proteinTCONS_00016140-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000226supercontigsc0000226:226834..230434 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.425471	0.223408	0.296455	0.870106	0.264818	0.348771	1.1361	0.59089	0.248217	0.204972	0.0994752	0.21797	19.5465	16.479	1.02214	0.578372	25.5765	20.3476	35.5218	35.6055	48.6365	43.4334	16.0986	19.924	30.3603	29.6674	22.8874	17.5293	0.108978	0.370106
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004031PMP22/EMP/MP20/Claudin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016140 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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