TCONS_00016123 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016123
Unique NameTCONS_00016123
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016123 ID=TCONS_00016123|Name=TCONS_00016123|organism=Clytia hemisphaerica|type=transcript|length=1257bp
aGGTGGAACCCCTTTTCAACCTCAAGTCCAACTTCAAGCACAACAAATGC
AACAAAATGCGCAGCAATACATTCCGCAACAGCACCAGCagcatcaacaa
caacaaaggaATGTCTATCAAACAATACAGCCACAACAGGCCCATCATTC
AACAATTCAACAAACTCAATCTCATCAAACTCCGGAAAGTGTCCCAAAAA
AGCGTACTATAAAAATTGTTGACCCAAATTCGGGCAAGGACTTGGTTAGT
GAACTTCAAAGTCGCAAAAAAACTGAAACAGAATAAGGCTAATGCAGCCC
CACAAGGTGGTCTTGATGAGAAGAAGTACTGCCCAAAATGTGTTGAAGAA
TATCCAATATTTGCTATATACTGTTCTGAGGATGGGACACCTTTAGCCTT
AAGAAAAAGCAGGTAACTACTTGTTATAAAAGATGACAGCTAAAATGTCA
GATGATGGGACTTGGACCATGCAGATGATGTTTTTTGGACCGTCTTTAAG
CGTATATCAAATAATCTGCGTGCCCCTAACCAAAAAATTCGGATCGCGAC
GGTTAGGAATTGTTATAATTTGTATAACTCTAACTAAAACAAATACCTAA
ATGGATTCCGAAAAATGGTCAGTAAAGACAAAGGAATATAATTTATATAA
TTCAGCAAGGTAGAAAATAGACCAGATTATGGACCAAAATAAGCATGCAT
TCATCGTCCGACTTGCAGAGTTGATAATTTTAATATTTAGTTCACCACTT
TCACTTCAAAAATGCACACGTTCAAGTTAAAGCTAACCGCTATGCACATA
TGTAgcaatgtaaaatatttagttgaACACTCCAAANAACCGCTATGCAC
ATATGAAgcaatgtaaaatatttagttgaACACTCCAAAATATAGACTAT
tcgttttatttctttttcaagattttcaacgTTGAAGtgttgatattcat
gatgtaatctttacgCATAAATAATACATGCGACGTAAAAACTTGGCTGC
CATTATTGTTGGCACAATATCGAGCCAACTAACCTATAGTATTGAAACTG
GGGGCTCGAAAAATTGAAACCTTTATAACTTGTGTCTTGTGTCAAATCCA
AATTAACAATCAACTAACGTAGTACTTGCTGTTTAGTTTTGATGATTCGT
TTTAACACTGCAACGTTTTTGCAAGCTCAGCATATTTTTAATAACAGTAC
AGACCTCAACTCATTATTGATTCTTACGATCTGGAGTTCAGTGTTCTTTA
TCTCATG
Run BLAST on NCBI

transcript from alignment at sc0000226:124568..128757-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016123 ID=TCONS_00016123|Name=TCONS_00016123|organism=Clytia hemisphaerica|type=transcript|length=4190bp|location=Sequence derived from alignment at sc0000226:124568..128757- (Clytia hemisphaerica)
AGGTGGAACCCCTTTTCAACCTCAAGTCCAACTTCAAGCACAACAAATGC
AACAAAATGCGCAGCAATACATTCCGCAACAGCACCAGCAGCATCAACAA
CAACAAAGGAATGTCTATCAAACAATACAGCCACAACAGGCCCATCATTC
AACAATTCAACAAACTCAATCTCATCAAACTCCGGAAAGTGTCCCAAAAA
AGCGTACTATAAAAATTGTTGACCCAAATTCGGGCAAGGACTTGGTTAGT
GAACTTCAAAGTCGCAAAAAAACTGAAACAGAATAAGGCTAATGCAGCCC
CACAAGGTATGATCATGATAAAAAAAGGGAAACAAGTTAGAAAGGAAATA
ATCAATATCCCTTAATTAAATCTATCATTACACATAAATGCATAAATCGA
GCAACATGACTCTTAAAATCGGCGTTAAACGGGTTTTCTTAAGATTTTTC
CAGTTGTACTCTACATAGTTTCATGATCTTTCGCACAATGATACAAAATG
AAAATTCCAAAATTGACAATATAGAGAAAATAATTTTTCTGTTCGTTAAA
TCCGGAAATGTCCCGAAAAAAGCGGTTTTTAGGGATTTTCTTTGGAGATT
TTATCAACAGTTGNATGTCCCGAAAAAAGCGGTTTGTAGGGATTTTCTGC
GGAGATTTTATCAACAGTTTTTGTTTGCATGTACCATTAAGGACAAGGCC
GTTAATTTGATATATAACCATCACGTGACGGCGAAAGAACTCAGGAAAGC
TGTTATGCTTCGATTAAAACTTAAAAAACATAAAGTAGGCCCGGTTCGTA
ACAAAAAACATCAAAAACAAAATTTGAACAAAGATATAGAATCTGAAAGC
TCTCGAAAAACTATATATAAGACTTTTAAAAAGTATGACCGATTTCTGTA
CTGAACGGGGGAGTTATTTGATGTAGAAGTGCCATTTTATAAGCGATTTA
TGACCAAAATGAGGGGGAAACCACCACTTCTTCATCAAATCACTCCCGTT
CAGTACAGAAATCGACCATACTCGCTTAAAAGCCTTTATATAGTTTTAAA
GTTTTTTTTAGAGCTTTCAGATTCTATAATTGGATTTGGCCTGTTTCTGG
GCCGCGCTTCTAATATCAATCCATAGGGTATTAGGCATGTCTGGTCCGAA
TTTGGTGTTTTGTTTCAAAATTGCACGATAATTACACCAATCAGGCCTAC
TAATAGCAAACAATCACGAGCGATCACGATTATCACGAGCAATGATGTTG
CTCGTGATAATCGCCAGAGGAACTTTGTCGTCAATATGAATAGGAAAGCC
AAGAAATCTTTCTTCATCAAAAATTACCCAAAATAATTTCCCAAAGACCT
GTGGGACACTTTTAAGCCCCTCTTTTCAAATAAGGACAATTTTGCTGATG
AGCGAATTCAGCTTATTAAGGATGATCGCACTATATCTCAATATAAGTGC
TGCGACTTTAACCCTTCCAACATCTTGGGAAATCTTTTGATAGCTTTTGA
GATACATGCTTTTTTTTATCNCCTTATCTCGATATAAGTGAGTATAACTT
TTAAGATACATGCTTTTTTTTATAAGAATACACTTTATAAGAATGTCCAT
GATAAAAATGGCCAAACAACTAAGAATATGCTAAGAATATCACCATCATG
GAATTTTGCTACTAAAGCTAAGAATGCCATTTTAAGAGCATTTTCAATTA
TAAATTACCCCCAAGTTAGGCTCACTCCTTTTACAAAAGTGTCATTTTAT
GCTTGAGACGTATGTACTAAATGTTAAATCTAGTATGAATTAGGATCCTA
ACCGCTAAGAATATGGTGTAAGAATATTTTAGGATGATTTTCCCAAAAAA
GTTAAGAATATCCATGGTGAAATGGTTTTACACCATTCTTATAAAAAAAG
CGTGTATTCATCCGATTGACTTGAAATTTTGCAAGTGTGCAGCAAATATG
AATTGGCATCTTTGGTAAAGATTTCGACATTATTAATGACGTCATCGTCA
CCTGACGACGTCATCATTCATTGAAAATACCGAAAATAGGATCCCCCTCT
AACTTTTTTTTACTTTAACCTTTTTTGCGCAAATTTTGTGAGGCAACTAC
ACGTGACATGTATTTTTGTGGTAGAGGGTCAAATCTTTGCCACCTGTTGG
TATCGTGTATTTTACAGATTGGCCCAAAATTGCCCTTTTTTGCCTAAACA
GCCCTATTACAGCGATACTGTATCTAGTGATTGGAAAATGCTGTTGACTT
GAAATTTAGGCAAGTATTGATAATACGAGCGGACGAGTAGTGGTTATGCT
GAAAGTGAGCAATTTTAAGTAAAAACGGACCGGTCTGTAAAAAACCAACT
GGTTACGTGACTCCATTAAAGATTTTGCCCACTGTCTTAGATGATCAATA
TCTGTCACTGGTGAAAATTTCAAAAGTGAAAAGCTCCATTAGTTCCTGAG
TTCTGGCAGGTGGTCAACGAGTATTTTACAGACCGGTCTGCAAAGTTTCG
AAAACCTTATAGGAACGAATTTTTTCTGCTACTAATCTTCTTTCGACCAA
TCAGCCTTTAGGAACAAATTTCAGTCAAATCGAACGAGTCAATCAGTAAT
ACATGATTTTGATAAAGATTACATTCTGGTCTGTAAAATACCAACCAGAC
AGGTGGCCGAACCAAAATTTTGTCAATCCCCCCAAGATGCTTCCTCTAGT
AAAAAAAAAGAAACGCTCGATGTAATAAATCGCCTGAACGATTCTAAGTC
AGTCAGTTTTGAACTTACAAAGACTATAAAGCTAGCCAAATTTGTTTTTG
CTCCTAAATTGACAACATGTTTCAACCACAGTATTGAAATTCAACAGTTT
TCTGATAGCTTGAAGCAGGCTGATATAATTCCAGTCCATAAAAATAATAT
CAAGCACGACAAGGATAACTACTCGCTTCTCCGACTAAAATCTTTGAAAA
ACTAATCTCGAAACAATTTAGCATTTTTCTTGAATCCTTTTTCTCTTAAA
ACTCTGAGTTAAAAGTGGGATCATCTTAAAGTAATTGGCTACCTTTGAGT
GCCGCAAGAATCTATTTTAGGTCCACCCTAACATATTATATACTGTTGGA
AAGGAAATTTAATTCTGAACAATTCTGAGTCACATTTGATAAAATCTTTA
TGTCATTCACCTCTTTTGTATTTATTTAATATGTATATTGTATTTTATTT
TAGGTGGTCTTGATGAGAAGAAGTACTGCCCAAAATGTGTTGAAGAATAT
CCAATATTTGCTATATACTGTTCTGAGGATGGGACACCTTTAGCCTTAAG
AAAAAGCAGGTAACTACTTGTTATAAAAGATGACAGCTAAAATGTCAGAT
GATGGGACTTGGACCATGCAGATGATGTTTTTTGGACCGTCTTTAAGCGT
ATATCAAATAATCTGCGTGCCCCTAACCAAAAAATTCGGATCGCGACGGT
TAGGAATTGTTATAATTTGTATAACTCTAACTAAAACAAATACCTAAATG
GATTCCGAAAAATGGTCAGTAAAGACAAAGGAATATAATTTATATAATTC
AGCAAGGTAGAAAATAGACCAGATTATGGACCAAAATAAGCATGCATTCA
TCGTCCGACTTGCAGAGTTGATAATTTTAATATTTAGTTCACCACTTTCA
CTTCAAAAATGCACATTTAAAGACTCGCACATACACAAAAGCAAAAGCAC
ACGTTCAAGTTAAAGCTAACCGCTATGCACATATGTAGCAATGTAAAATA
TTTAGTTGAACACTCCAAANAACCGCTATGCACATATGAAGCAATGTAAA
ATATTTAGTTGAACACTCCAAAATATAGACTATTCGTTTTATTTCTTTTT
CAAGATTTTCAACGTTGAAGTGTTGATATTCATGATGTAATCTTTACGCA
TAAATAATACATGCGACGTAAAAACTTGGCTGCCATTATTGTTGGCACAA
TATCGAGCCAACTAACCTATAGTATTGAAACTGGGGGCTCGAAAAATTGA
AACCTTTATAACTTGTGTCTTGTGTCAAATCCAAATTAACAATCAACTAA
CGTAGTACTTGCTGTTTAGTTTTGATGATTCGTTTTAACACTGCAACGTT
TTTGCAAGCTCAGCATATTTTTAATAACAGTACAGACCTCAACTCATTAT
TGATTCTTACGATCTGGAGTTCAGTGTTCTTTATCTCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009011XLOC_009011Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016123-exon-sc0000226-1575043694:128452..128757TCONS_00016123-exon-sc0000226-1575043694:128452..128757Clytia hemisphaericaexon
TCONS_00016123-exon-sc0000226-1575043694:125094..125554TCONS_00016123-exon-sc0000226-1575043694:125094..125554Clytia hemisphaericaexon
TCONS_00016123-exon-sc0000226-1575043694:124568..125057TCONS_00016123-exon-sc0000226-1575043694:124568..125057Clytia hemisphaericaexon
TCONS_00016123-exon-sc0000226-1510915933:128452..128757TCONS_00016123-exon-sc0000226-1510915933:128452..128757Clytia hemisphaericaexon
TCONS_00016123-exon-sc0000226-1510915933:125094..125554TCONS_00016123-exon-sc0000226-1510915933:125094..125554Clytia hemisphaericaexon
TCONS_00016123-exon-sc0000226-1510915933:124568..125057TCONS_00016123-exon-sc0000226-1510915933:124568..125057Clytia hemisphaericaexon
TCONS_00016123-exon-sc0000226-1491911889:128452..128757TCONS_00016123-exon-sc0000226-1491911889:128452..128757Clytia hemisphaericaexon
TCONS_00016123-exon-sc0000226-1491911889:125094..125554TCONS_00016123-exon-sc0000226-1491911889:125094..125554Clytia hemisphaericaexon
TCONS_00016123-exon-sc0000226-1491911889:124568..125057TCONS_00016123-exon-sc0000226-1491911889:124568..125057Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000226supercontigsc0000226:124568..128757 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.913676	1.23105	0.71703	0.892764	3.11935	2.10149	2.41677	2.8026	1.29353	3.6133	0.845734	1.84052	5.12499	5.98959	1.73262	1.70976	1.51455	0.773233	2.08891	3.83406	1.44496	1.74221	2.17611	2.20934	8.10552	9.26661	2.11268	2.12099	0.694969	0.743329
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016123 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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