TCONS_00016120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016120
Unique NameTCONS_00016120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1554

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016120 ID=TCONS_00016120|Name=TCONS_00016120|organism=Clytia hemisphaerica|type=transcript|length=1554bp
aaaaaacaagatcCAAAGCTTCTGATGAAAACAGAAGATCATGAAtgttt
ctacaagaagttgattttcttcgtcttcttcattttctgtcttctttttt
ttaatttttctaattcttaattttttggtgaTATTCCacttttgaatatc
tttctaACGAACAAAAAAACCGCTacctaattcgaattctatcaaaagtg
aacttttttggCTCCACtgaagattatattgagacagacttaagTAGGTG
TTGACAGCAGACACTGTGAACGACAGTGATATCTTTAAACCACCACTTCT
GGACTTATAAGCTGTAAACAATACAATTTGAAATCTCCACCATTCTTTTT
ATACCGGGtaactgagacaggggtgttgtaaCTAAATGATCAACGAATAA
AGAATTTGTTCTTACGTCATTATGGTCTCGTTCATCTGCACGGCTCTCTG
ATCGTCTGATGTACCATGATGGATAAGGAATTTCTTCTTCAGGTTCTTCA
TCAAAAGATCCAATGTTTTCCTCAGCATCTGTTGCACTCCTATTTCGTTC
CAATTTCGCATTTTGAACTCTTTCTTCAAATTCTTGAAATCGTTTAGGGG
GTGTCGGTTTTTGAGGGCGGCGTTTTGACATTTTGGGTGGGCTTGGTTTG
GGCGGGTAGGGTGTGAAAGACTTTTTATgttcttcttcctcttcttcgCT
ACGTACCACGTAATATTCTTCCTCCCCGTTGACGTACTTCATGACGGTAA
ACGTCTTCTTTTCCCCGTCGACCTCGATTGTCGATAACGTGCTTTCAACC
AACGTCGCCTTGTCAATTTCActcctttctttgttttctttcttgtcAGT
TTTTTCTTCCTCTTGGTTTTTAATCTGGTCCGTATTTTTGTCTGATGTTT
GCTTTGATTTTGCATCTTCTGCATAACTCCTGATTCGATAGATCTCTTCA
GGTTCCTCAATTTCAGGGttcgggtctgtaaaatattcaatttcaacTTT
GGTGTTTGTATTGAATTCAGCTTCTTCTACAACCTTGTTTGTTTCTTGTT
CTGCAAAATACTCAATGTCAACATTCAGTTTTGTATTATATTCTGGATTT
TTCACGTACTCACCAGTAGTCAAATCTTTGAGATAATCGTACGCAGATTT
GGTTTTTGATGGTTTAAAGTTAGGATTTCTAACAGTTTCCCCTGTtgtca
aatctttcaaatccTCCACAGAGTTTTTACTCTCCTCTTCATTCTTTATG
CAATTATTCTGGTCTGGACAATACACACTTGGTATAATTGGAAGGTTTAA
ATTGACtagctcatcatcataagaaTCGCCGTGTCGGAATTTCTCTAAAC
TTCGAGCTTTTCGTCGTTGCTTTTCACGGATTTTTCGCTGCTTCTTTTCT
GCTCTTGCTTTTCCTTGTTTAGCAGATCTCTTTATTTTATCCAATTGTAT
TTGTGATTGGTTATGTCGCTTCTTGTAGTAATCCAATTTTCGTTGTAATC
TATAGGTATTGAAAAACAATTCACTATTTTCACTGCATAATAGGTAGGCT
TTAT
Run BLAST on NCBI

transcript from alignment at sc0000226:98613..100218-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016120 ID=TCONS_00016120|Name=TCONS_00016120|organism=Clytia hemisphaerica|type=transcript|length=1606bp|location=Sequence derived from alignment at sc0000226:98613..100218- (Clytia hemisphaerica)
AAAAAACAAGATCCAAAGCTTCTGATGAAAACAGAAGATCATGAATGTTT
CTACAAGAAGTTGATTTTCTTCGTCTTCTTCATTTTCTGTCTTCTTTTTT
TTAATTTTTCTAATTCTTAATTTTTTGGTGATATTCCACTTTTGAATATC
TTTCTAACGAACAAAAAAACCGCTACCTAATTCGAATTCTATCAAAAGTG
AACTTTTTTGGCTCCACTGAAGATTATATTGAGACAGACTTAAGTAGGTG
TTGACAGCAGACACTGTGAACGACAGTGATATCTTTAAACCACCACTTCT
GGACTTATAAGCTGTAAACAATACAATTTGAAATCTCCACCATTCTTTTT
ATACCGGGTAACTGAGACAGGGGTGTTGTAACTAAATGATCAACGAATAA
AGAATTTGTTCTTACGTCATTATGGTCTCGTTCATCTGCACGGCTCTCTG
ATCGTCTGATGTACCATGATGGATAAGGAATTTCTTCTTCAGGTTCTTCA
TCAAAAGATCCAATGTTTTCCTCAGCATCTGTTGCACTCCTATTTCGTTC
CAATTTCGCATTTTGAACTCTTTCTTCAAATTCTTGAAATCGTTTAGGGG
GTGTCGGTTTTTGAGGGCGGCGTTTTGACATTTTGGGTGGGCTTGGTTTG
GGCGGGTAGGGTGTGAAAGACTTTTTATGTTCTTCTTCCTCTTCTTCGCT
ACGTACCACGTAATATTCTTCCTCCCCGTTGACGTACTTCATGACGGTAA
ACGTCTTCTTTTCCCCGTCGACCTCGATTGTCGATAACGTGCTTTCAACC
AACGTCGCCTTGTCAATTTCACTCCTTTCTTTGTTTTCTTTCTTGTCAGT
TTTTTCTTCCTCTTGGTTTTTAATCTGGTCCGTATTTTTGTCTGATGTTT
GCTTTGATTTTGCATCTTCTGCATAACTCCTGATTCGATAGATCTCTTCA
GGTTCCTCAATTTCANTCTTCTGCATAACTCCTGATCCGATAGATCTCTT
CAGGTTCCTCAATTTCAGGGTTCGGGTCTGTAAAATATTCAATTTCAACT
TTGGTGTTTGTATTGAATTCAGCTTCTTCTACAACCTTGTTTGTTTCTTG
TTCTGCAAAATACTCAATGTCAACATTCAGTTTTGTATTATATTCTGGAT
TTTTCACGTACTCACCAGTAGTCAAATCTTTGAGATAATCGTACGCAGAT
TTGGTTTTTGATGGTTTAAAGTTAGGATTTCTAACAGTTTCCCCTGTTGT
CAAATCTTTCAAATCCTCCACAGAGTTTTTACTCTCCTCTTCATTCTTTA
TGCAATTATTCTGGTCTGGACAATACACACTTGGTATAATTGGAAGGTTT
AAATTGACTAGCTCATCATCATAAGAATCGCCGTGTCGGAATTTCTCTAA
ACTTCGAGCTTTTCGTCGTTGCTTTTCACGGATTTTTCGCTGCTTCTTTT
CTGCTCTTGCTTTTCCTTGTTTAGCAGATCTCTTTATTTTATCCAATTGT
ATTTGTGATTGGTTATGTCGCTTCTTGTAGTAATCCAATTTTCGTTGTAA
TCTATAGGTATTGAAAAACAATTCACTATTTTCACTGCATAATAGGTAGG
CTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009009XLOC_009009Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016120-exon-sc0000226-1575043694:99268..100218TCONS_00016120-exon-sc0000226-1575043694:99268..100218Clytia hemisphaericaexon
TCONS_00016120-exon-sc0000226-1575043694:98613..99215TCONS_00016120-exon-sc0000226-1575043694:98613..99215Clytia hemisphaericaexon
TCONS_00016120-exon-sc0000226-1510915933:99268..100218TCONS_00016120-exon-sc0000226-1510915933:99268..100218Clytia hemisphaericaexon
TCONS_00016120-exon-sc0000226-1510915933:98613..99215TCONS_00016120-exon-sc0000226-1510915933:98613..99215Clytia hemisphaericaexon
TCONS_00016120-exon-sc0000226-1491911889:99268..100218TCONS_00016120-exon-sc0000226-1491911889:99268..100218Clytia hemisphaericaexon
TCONS_00016120-exon-sc0000226-1491911889:98613..99215TCONS_00016120-exon-sc0000226-1491911889:98613..99215Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000226supercontigsc0000226:98613..100218 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.43332	0.145678	0.227556	0.0478909	0	0	0.399707	0.0791852	0.968871	0.180214	0.557635	0	0.419892	1.84665	0.684477	0.222036	1.63213	0.58211	4.60194	1.80526	1.90741	1.79993	1.01429	1.63382	0	0.456419	0	0.0379524	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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