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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016101 ID=TCONS_00016101|Name=TCONS_00016101|organism=Clytia hemisphaerica|type=transcript|length=4080bpRun BLAST on NCBI protein sequence of TCONS_00016101-protein >TCONS_00016101-protein ID=TCONS_00016101-protein|Name=TCONS_00016101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=954bp MDAMMCQMDDLSKVNKQEKMLNNRKQKSRDAARNRRSKENDQYEALAKLLRun BLAST on NCBI transcript from alignment at sc0000226:294655..328048+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016101 ID=TCONS_00016101|Name=TCONS_00016101|organism=Clytia hemisphaerica|type=transcript|length=33394bp|location=Sequence derived from alignment at sc0000226:294655..328048+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000226:294655..328048+ >TCONS_00016101 ID=TCONS_00016101|Name=TCONS_00016101|organism=Clytia hemisphaerica|type=CDS|length=34380bp|location=Sequence derived from alignment at sc0000226:294655..328048+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016101 vs. Swiss-Prot (Human)
Match: NPAS3 (Neuronal PAS domain-containing protein 3 OS=Homo sapiens GN=NPAS3 PE=2 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 1.118e-79 Identity = 161/407 (39.56%), Postives = 232/407 (57.00%), Query Frame = 1
Query: 220 RKQKSRDAARNRRSKENDQYEALAKLLPLPESISSQLDKASIIRLTIGFLKYKDLIGTGGGMQHNGYRRNMMLMSXXXXXXXXXPYHPQRAVQKTSVYSDI-EQRIGKHIEHALDGFMLTVSDNGHFIYVSDTIEQFLGLRQIDLIGTSAYDVIHPEDHQTFMELLCSTF--------QKSNQQYKMNNMMDFDAMTFMEMERKSKQGFV-------SLFIRFKCTLAKKGASVSKSAGYKVIHISGQMIPFKNLDHK---GEQMFALVATGHALPPPTICELKLDTKVFVSRVSMDLKIVFCEGKIRKYMNFTAQDIVGMRAYDFYHLKDSHIVQDAHNDCLKSGKCRSLAYRWMNKTGGWVWMQTVGTV-ISRKTAKGEENQILCVNYISSDVEHEDEMMHSIQL 1380
RK+KSRDAAR+RR KEN ++ LAKLLPLP +I+SQLDKASIIRLTI +LK +D G + + M N + QR +++ ++ E +G HI +LDGF+ ++ G F+Y+S+T+ +LGL Q++L G+S +D +HP DH E L Q + + + + T +E S S FIR K TL K+G + KS+GYKVIHI+G++ +L H Q+ LV HALPPPTI E+++D +FV+RV+MDL I++CE +I YM+ T DIVG R Y F H +D ++ +H D L G+C + YRWM K GG++W+Q+ T+ I+ K A E I+ VNY+ S+ E++D M QL
Sbjct: 52 RKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQGDPPWN-------LRMEGPPPNTSVKVIGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTAEDGASSASSSSQSETPEPVESTSPSLLTTDNTLERSFFIRMKSTLTKRGVHI-KSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNAN--EKNIIWVNYLLSNPEYKDTPMDIAQL 448 The following BLAST results are available for this feature:
BLAST of TCONS_00016101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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