TCONS_00016095 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016095
Unique NameTCONS_00016095
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1219

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016095 ID=TCONS_00016095|Name=TCONS_00016095|organism=Clytia hemisphaerica|type=transcript|length=1219bp
GAGTTATGGTTTTTAGATGACACAATCTTCGATATGTTGTGGTGATTTAC
ATTTGCAGAGtaatttgaagttttctttttgtttgttaTAGTTGTATTGA
AATTCGAGGAAGAAAGCTTTGAATCTACACTGCTTGTGGTAACGTTTGAA
GGGATGGGGTTTGTATGGTTTGATGTCACCTCAAGGGTTGCATTTTCTTT
AGTTGACTGGCTCGAAACGTATTGATTCTCTACATTTTCAACATTGCTAA
GATGATCTGCAGGTTGTGAAGTCTCGTGGAGAGTAACACTTCCTTTAGCT
GTCTGGTTTGAAGctgtatttttatcaatttcaattttaccGGGGAATTC
GACTTTTAAACTTGAAGTCTGGTTCTTATCGTTGTTCAATTGTTtcgttt
ttgttattttgatggACGCTTTCGATTTTGAAATGTTCTCCGAGGTCACA
GGATGTTTCATTGTTTGATTCTTGTTCACATCGGTCATATTTCCACTCAT
AACATTCACTGTTTTGTTACCAAAGTCTCTATCCAGTACTGTTGTTTTTC
CTTGGTGGTTTGGAATGTCATCGCTCTCGAGTGATTTGAGTTCATTCTTG
TGTGTGAAATTTCCTTTACTTTTGAAATTCTGGACCTTCGCACCCAAAGT
TGAATTACTTAAATTCACATTATTATTTTCAATGCTTTTCTTGAAAGTCA
TGTTTGAATGACATAGAGTCTCATTCAAACTTTTCATCACCCCTTTTTTA
GTATCATTCGTTTTACAGACATGATCTTTCTTAAATCCTTCATTGAGTGG
CAACTTTACGCCTGGTTCCAATTTGGTGTTAGGGCCTGCACCTTCAGCTT
TTACGGCTTCCTTGGTCACACCTTGTGCAGGATCTGTAACACCTGTTGCT
GGGTCTATGACCCCTTTAGCTGGATCACCAACCCCTATACGGCTATCGAT
GGCCCCGAGGGCTGCATATTCTGCACCAGTTGCCCCTGTCGCGGGATGGT
CCACGCCCATGGCCCCACGTGCTCCCACTATTGCCCTGTGATGTTGATAA
CCATCTAGATTAACGACAGCGGTACCACTTGGTAACATTAAGACTCGGTC
ACTGGTCACGTTGGGATGATCGTTTGGATTTCGTATTAAAGGTGCTTCTT
CCACGTGTGGTGCGAGATGGTAAAGATGGCGTGTCAAATTGTGTTTTGAT
AAATGTCTTCGGTGATTCA
Run BLAST on NCBI

transcript from alignment at sc0000226:236525..237794+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016095 ID=TCONS_00016095|Name=TCONS_00016095|organism=Clytia hemisphaerica|type=transcript|length=1270bp|location=Sequence derived from alignment at sc0000226:236525..237794+ (Clytia hemisphaerica)
GAGTTATGGTTTTTAGATGACACAATCTTCGATATGTTGTGGTGATTTAC
ATTTGCAGAGtaatttgaagttttctttttgtttgttaTAGTTGTATTGA
AATTCGAGGAAGAAAGCTTTGAATCTACACTGCTTGTGGTAACGTTTGAA
GGGATGGGGTTTGTATGGTTTGAATCTACACTGCTTGTGGTAACGTTTGA
AGGGATGAGGTTTGTATGGTTTGATGTCACCTCAAGGGTTGCATTTTCTT
TAGTTGACTGGCTCGAAACGTATTGATTCTCTACATTTTCAACATTGCTA
AGATGATCTGCAGGTTGTGAAGTCTCGTGGAGAGTAACACTTCCTTTAGC
TGTCTGGTTTGAAGctgtatttttatcaatttcaattttaccGGGGAATT
CGACTTTTAAACTTGAAGTCTGGTTCTTATCGTTGTTCAATTGTTtcgtt
tttgttattttgatggACGCTTTCGATTTTGAAATGTTCTCCGAGGTCAC
AGGATGTTTCATTGTTTGATTCTTGTTCACATCGGTCATATTTCCACTCA
TAACATTCACTGTTTTGTTACCAAAGTCTCTATCCAGTACTGTTGTTTTT
CCTTGGTGGTTTGGAATGTCATCGCTCTCGAGTGATTTGAGTTCATTCTT
GTGTGTGAAATTTCCTTTACTTTTGAAATTCTGGACCTTCGCACCCAAAG
TTGAATTACTTAAATTCACATTATTATTTTCAATGCTTTTCTTGAAAGTC
ATGTTTGAATGACATAGAGTCTCATTCAAACTTTTCATCACCCCTTTTTT
AGTATCATTCGTTTTACAGACATGATCTTTCTTAAATCCTTCATTGAGTG
GCAACTTTACGCCTGGTTCCAATTTGGTGTTAGGGCCTGCACCTTCAGCT
TTTACGGCTTCCTTGGTCACACCTTGTGCAGGATCTGTAACACCTGTTGC
TGGGTCTATGACCCCTTTAGCTGGATCACCAACCCCTATACGGCTATCGA
TGGCCCCGAGGGCTGCATATTCTGCACCAGTTGCCCCTGTCGCGGGATGG
TCCACGCCCATGGCCCCACGTGCTCCCACTATTGCCCTGTGATGTTGATA
ACCATCTAGATTAACGACAGCGGTACCACTTGGTAACATTAAGACTCGGT
CACTGGTCACGTTGGGATGATCGTTTGGATTTCGTATTAAAGGTGCTTCT
TCCACGTGTGGTGCGAGATGGTAAAGATGGCGTGTCAAATTGTGTTTTGA
TAAATGTCTTCGGTGATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009001XLOC_009001Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016095-exon-sc0000226-1491911889:236525..236682TCONS_00016095-exon-sc0000226-1491911889:236525..236682Clytia hemisphaericaexon
TCONS_00016095-exon-sc0000226-1510915933:236525..236682TCONS_00016095-exon-sc0000226-1510915933:236525..236682Clytia hemisphaericaexon
TCONS_00016095-exon-sc0000226-1575043694:236525..236682TCONS_00016095-exon-sc0000226-1575043694:236525..236682Clytia hemisphaericaexon
TCONS_00016095-exon-sc0000226-1491911889:236734..237794TCONS_00016095-exon-sc0000226-1491911889:236734..237794Clytia hemisphaericaexon
TCONS_00016095-exon-sc0000226-1510915933:236734..237794TCONS_00016095-exon-sc0000226-1510915933:236734..237794Clytia hemisphaericaexon
TCONS_00016095-exon-sc0000226-1575043694:236734..237794TCONS_00016095-exon-sc0000226-1575043694:236734..237794Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000226supercontigsc0000226:236525..237794 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.039772	0	0.171844	0.0304645	0	0	0	0.316334	0.313666	0.0484084	0.210759	0.31424	1.97569e-07	1.18367	0	1.23321e-09	0	0.0781477	0.24641	0	0.043065	0.0987526	0	0.156524	0.0302337	0.0514034	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016095 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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