TCONS_00016077 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016077
Unique NameTCONS_00016077
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016077 ID=TCONS_00016077|Name=TCONS_00016077|organism=Clytia hemisphaerica|type=transcript|length=544bp
TGATAACACCCCGTTCTCACAGACTTAGTAGGATTTATTTCAGCCATAGG
GATAAAATTAACGGACTGCACGAACTCGATGGGAATtgattttcccaaat
tttttttatggctCGAGATTTCTATTCTCTTCTCTTTCAAGGCAGAAAAT
TCAGTGCAGATGGGAAAAAAGCATCATATTTTGCAGGTTGGGATGTATTT
TTTTGGTTATTTCGTCCCACCTTGTACgttatttttgacaatttttcaag
tgggaagggttccaagtgggtctgtgagaagggactGTCTGATACAATTT
AAGTTTAAATTATTCTCATTATTTAAACATTTGATTActaaattcattaa
aaaaagtttatttcatAAATAATTGCACAGAGGAGTCCCATTGagtcctt
ttttataagaaccagtaaaattttgctgaggctcggctgttcttattttt
ttggtactttgagcctcaaatcgTTCTTATCCtttttattgccgacccaa
aaaaatatcagcgttttgattggtcgattgcatcgagatatttg
Run BLAST on NCBI

transcript from alignment at sc0000225:305359..305902

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016077 ID=TCONS_00016077|Name=TCONS_00016077|organism=Clytia hemisphaerica|type=transcript|length=544bp|location=Sequence derived from alignment at sc0000225:305359..305902 (Clytia hemisphaerica)
caaatatctcgatgcaatcgaccaatcaaaacgctgatatttttttgggt
cggcaataaaaaGGATAAGAAcgatttgaggctcaaagtaccaaaaaaat
aagaacagccgagcctcagcaaaattttactggttcttataaaaaaggac
tCAATGGGACTCCTCTGTGCAATTATTTatgaaataaactttttttaatg
aatttagTAATCAAATGTTTAAATAATGAGAATAATTTAAACTTAAATTG
TATCAGACagtcccttctcacagacccacttggaacccttcccacttgaa
aaattgtcaaaaataacGTACAAGGTGGGACGAAATAACCAAAAAAATAC
ATCCCAACCTGCAAAATATGATGCTTTTTTCCCATCTGCACTGAATTTTC
TGCCTTGAAAGAGAAGAGAATAGAAATCTCGagccataaaaaaaatttgg
gaaaatcaATTCCCATCGAGTTCGTGCAGTCCGTTAATTTTATCCCTATG
GCTGAAATAAATCCTACTAAGTCTGTGAGAACGGGGTGTTATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008987XLOC_008987Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016077-exon-sc0000225-1491911889:305359..305902TCONS_00016077-exon-sc0000225-1491911889:305359..305902Clytia hemisphaericaexon
TCONS_00016077-exon-sc0000225-1510915933:305359..305902TCONS_00016077-exon-sc0000225-1510915933:305359..305902Clytia hemisphaericaexon
TCONS_00016077-exon-sc0000225-1575043694:305359..305902TCONS_00016077-exon-sc0000225-1575043694:305359..305902Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000225supercontigsc0000225:305359..305902 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.211807	0.105861	0.719458	0.480975	1.28769	0	0.408468	0.641983	0.365533	0.444613	0.214589	0.501467	0.354573	0	0.187164	0	0.166342	0.248967	0.470989	0.361389	0.655122	0.477441	0.124465	0.119227	1.37716	3.56971	1.06268	0.861535	0.241978	0.241872
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016077 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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