TCONS_00016065 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016065
Unique NameTCONS_00016065
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length887

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016065 ID=TCONS_00016065|Name=TCONS_00016065|organism=Clytia hemisphaerica|type=transcript|length=887bp
acaatatctttgtttcaaaaaatgattaaaattaaaaattaaaaatggtc
aaaataaaatataagtaCAGCGATTGAGATGTAAAATTCATTAGTTTATT
CAACAACTGCTAGTCTTGTGGATGGTCTGAGAAGTAGTGACAAAAGTGTT
TTAATaaaatcaccAAGTCAGTGAAGATGAAGAAAACAGTTCTTCTTTTG
TTATTGGTGTGCCAAGTTTTTGGTCAAAATGTTGTGAAGAAGGCATCAAT
CGAGACACTGGATCATCTGGCAACTGAAATTCGGGGAAAAATCGATGGTA
ACCCACGTTTAGCAGCTGGGTTTGTGCGGTTATCTTTCCACGATTGTGTT
GGCGAAGATCGATGTGATGGATGTATCAATTACCAGGAACCTGACAACGC
TGGTATTCCTCGTTACACAGCTGTATTAAATGATCTTTACGAGCCTGTTA
AAAATGATATTACCAGAGCTGATCTTTATGCTTATGCTGGCGTTGTTGCT
GCTAATTATGCTTCTTCAAGAGATGCTGTTTTCGATATGACAAAATTCAA
AGTTGGACGCCACGATTGTAGTGAATCTGGTGATGAAACAGATCTAGATG
AGCATTTCCCGTCCAATAACTTCCAGAATGTAGAGGAACTACATGCCTAT
TTCAACAAAGAGTTTGGTCTGTCTTTACAAGAAAGTGTAGCCTTGATGGG
TGCTCATAGTCTTGGTCGTATGGAAACTGCAAATTCTGGATATGAAGGAC
CTTGGGTACCTGGAACTGGGCAAGATGTCTTAAACAGCGACTACTATCGT
GAAGTGGTGAATGTTCCCTGGTTCCTTAAAACAATGCCAACAAATAGCGC
CAAACATCAGTGGCAACGCCGAGCACCAAGTCTTGGT
Run BLAST on NCBI

transcript from alignment at sc0000225:306801..308255-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016065 ID=TCONS_00016065|Name=TCONS_00016065|organism=Clytia hemisphaerica|type=transcript|length=1455bp|location=Sequence derived from alignment at sc0000225:306801..308255- (Clytia hemisphaerica)
ACAATATCTTTGTTTCAAAAAATGATTAAAATTAAAAATTAAAAATGGTC
AAAATAAAATATAAGTACAGCGATTGAGATGTAAAATTCATTAGTTTATT
CAACAACTGCTAGTCTTGTGGATGGTCTGAGAAGTAGTGACAAAAGTGTT
TTAATGTAAGTGAATCTTTTTGTTCTTTTTTGCTTTTGAAAGGGCGTTAA
CAACCTGATAGAAACGAGGAGACTTGGGTGGATGGGTAGTCAGATCAACC
TGGTGATGAACAAATAATTTGATTGACTACGGATTCATTAATTTTTGGCG
TGTAGGTATAGCCAGGCTGTCTTCTTGTTAACATTAGACGAAAAGTGAGA
CACAGCCATATCCTTGCTAGAAGAATCTCTCTAACTTTCAACCAAAAGGA
ACTTTTTAAATTCAAATCTCTTCAAAGTGACGATCTTCATCTTTTCTCAT
CGGATAAATTTCCATAAAAATATTTGAGTATTACTTACCGTAGAAGAAAT
TTTCCAAGAAAGAATATGGAAAATGTTTGAGCAAAATTTGCCCAAATTTT
ACCAAAATCACTCCCTTTGAGGAAAAGAATTCTATATTTTCCTGACTTTG
AAGTTTTTAGCCGGTTTTTATAACCGTTAGAGAGATTTTTAAGATGTGAA
AATTTCTTACACTGCTTGTACATACCTGCTTCAAATTTATTTCCTTTCAA
CCTTTTTTGTTTTAATTTTTCAGAAAATCACCAAGTCAGTGAAGATGAAG
AAAACAGTTCTTCTTTTGTTATTGGTGTGCCAAGTTTTTGGTCAAAATGT
TGTGAAGAAGGCATCAATCGAGACACTGGATCATCTGGCAACTGAAATTC
GGGGAAAAATCGATGGTAACCCACGTTTAGCAGCTGGGTTTGTGCGGTTA
TCTTTCCACGATTGTGTTGGCGAAGATCGATGTGATGGATGTATCAATTA
CCAGGAACCTGACAACGCTGGTATTCCTCGTTACACAGCTGTATTAAATG
ATCTTTACGAGCCTGTTAAAAATGATATTACCAGAGCTGATCTTTATGCT
TATGCTGGCGTTGTTGCTGCTAATTATGCTTCTTCAAGAGATGCTGTTTT
CGATATGACAAAATTCAAAGTTGGACGCCACGATTGTAGTGAATCTGGTG
ATGAAACAGATCTAGATGAGCATTTCCCGTCCAATAACTTCCAGAATGTA
GAGGAACTACATGCCTATTTCAACAAAGAGTTTGGTCTGTCTTTACAAGA
AAGTGTAGCCTTGATGGGTGCTCATAGTCTTGGTCGTATGGAAACTGCAA
ATTCTGGATATGAAGGACCTTGGGTACCTGGAACTGGGCAAGATGTCTTA
AACAGCGACTACTATCGTGAAGTGGTGAATGTTCCCTGGTTCCTTAAAAC
AATGCCAACAAATAGCGCCAAACATCAGTGGCAACGCCGAGCACCAAGTC
TTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008975XLOC_008975Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016065-exon-sc0000225-1575043694:308101..308255TCONS_00016065-exon-sc0000225-1575043694:308101..308255Clytia hemisphaericaexon
TCONS_00016065-exon-sc0000225-1575043694:306801..307532TCONS_00016065-exon-sc0000225-1575043694:306801..307532Clytia hemisphaericaexon
TCONS_00016065-exon-sc0000225-1510915933:308101..308255TCONS_00016065-exon-sc0000225-1510915933:308101..308255Clytia hemisphaericaexon
TCONS_00016065-exon-sc0000225-1510915933:306801..307532TCONS_00016065-exon-sc0000225-1510915933:306801..307532Clytia hemisphaericaexon
TCONS_00016065-exon-sc0000225-1491911889:308101..308255TCONS_00016065-exon-sc0000225-1491911889:308101..308255Clytia hemisphaericaexon
TCONS_00016065-exon-sc0000225-1491911889:306801..307532TCONS_00016065-exon-sc0000225-1491911889:306801..307532Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000225supercontigsc0000225:306801..308255 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.37385	1.05685	1.84488	2.44725	0	0.0192892	0	0	0.00278146	0	0	0.12985	44.3708	18.374	0	0	65.1382	121.778	62.8141	233.01	103.121	95.1269	17.3855	23.8119	30.1447	39.5148	25.1407	17.0964	0	0.426138
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016065 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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