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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016047 ID=TCONS_00016047|Name=TCONS_00016047|organism=Clytia hemisphaerica|type=transcript|length=2258bp
ATAAAATCTTGGTCTCTAAGAAAAAGCTTTTCATTGTTAGTGAAATCAGG
TCAAGTtgaaatccaatgaaaatacTGATTGTGATGTCATATAACTTCAT
GAAATAAATCTTTCATGGTTTTGCTGGTTTTTCATGGATATTCTAAGCTA
GAAGATTCAATAATTACTTGAATCTGAAGAATCCTGAAAGAATGGCGCCG
CCTGATCAAATCATCGGTGTCATCCTTCACGCAATTGGTTTCATATTCCA
CGCAACAGGACTCTACGTCCTCCTCCAAATCAAAGAAATCAGTCAATTCA
TGATCATTCAACGGTTATATTTAATCTATCTCAGTATCAGTGAAGGACTT
TATTGTCTCCTTTTCACCTTATTCTACATTGGTTTAATCCTGATGGATGA
TGAATTCACCAATATACCTTTCACTATCGGATCTGGAATGTATTTCTTTT
ACATCCTCATTATCATGCTCCTCACATTCGATCGTGTCCTAAATGTACGT
TCAAACACCAATTATCTCCATTGGTCACACAAGAAAGCGTACATGGCTGT
CCTCCTGGCTGGCTTCATCAGCACAGTCATTACCATCACTCTACTTTCAT
CCTATAAAACCTTCGCACAATCATTTGAGATTATGTCATTGTATAGCTAT
CCGACTGCTGGATTCACATTCGTTTTCTTCATAGTCTTCTGTTACACTTA
TCTGATCTATAAGATTTGGACACATCGACGCAACATTGTTCTTCCAATCC
TCCAACCTGCTGAAGACACTGAGAAAGAAACGCAATTGACAATATCTCCT
CCTGACAACGAATTACAAGGGTCATCATCAACTGCTGTTTTACCCTTAAC
AAACTCAACTTCCGTGACCCAAACACAAAgcaaaaacatcgaaaaaggaa
acaaaaaatcaacGGTCAACACTTCCGCACGCGCTATTTTACATCGTGAA
AAACGGAAACGAATATACGAAAACCTGAAGAAAGGTGTTCGAATCCCTGT
CCTGCTTGTTGTTACTTTCATTGCATTCATCATCATCCCTGATCAAATCC
ATTTTTGGTCTCATCTATTGAATGAGAAAATATCTGATGATGTTTTCATC
TTCTTTGGTGTGATCTATCCATTATCACCGATTTGTGATGCTATCATTTA
TATCTTCTTTCAGAAGAATACTCAAAGGTTTCTCCGTAGAAAACTTTCTA
AATTCTTTTAAATCAAACTTTTGACATCAAACACCACTGTGTCACAAAAC
CTACCTCACCGGAAAATCCTCCACAATTTTAACCCCACTcggaaattgac
tttgtttgAATCTCAATTTGAAATTAGATAGAAAAATAGCACTCTGAAAC
CATCCAATTGATCGATTCTTGACCTGGGTACAGTAAAATTTCCATCCCAA
TTGNATATATAGAATATTGCTTGGTAAAGATTCAAATTTAACTCCTCCGG
GCCTTAAACCAAATAACTGTAATGCTCACAGCAAGAACTTTTGTTTTTCG
ATGAAGATGATGAATTTCCAGTCATTTTTACGATTCTAAGGTGAATTTCG
GAATTTCGAAACATCTTGCGAAAAATCATGTCCTATTATAATATTTATAC
TTCACCCCTGCCTCGCAGTCCCGACGGAATTTCTTTTTACAGAGTTGAGA
TAAATATTCATATGAAAAGCCCGATGGGGACCAAAATTGTATTGTTTCCA
GTAAGGATAAACCCAGCGGGGATGGGTTTGAATAGACTATGCCATGGTCT
AATACGAATTCGAATAATAAAAAATAGCCTCGAACACGCAAATTAGCAGT
CGGGCGGAAATTTTGTCCGCGCTGGCGAAAAATAGTTGGAGGGGTTCAAT
GTCTTAGACTATAATCAACTCGGTAGGAAAGAAAACACAGACTATATTTT
CCACCGCgcattacgttttataatatacactTATGTTTTATCataatatc
ataataatattaCACgtacgatagcatcgtctagggtTTGGATAGAATGT
TTTTCCATTGACTTTCGAATGAAGAAGTCAATGAAGTCAATTTTCAAGTA
ATGTTGACATTTTAGGGTATTCAGCTAAACGGGGACAAAATCTTTGGCCG
AATTTTTCAATGCACTGGGTCTATGACACGGGGGTGTTCTGATTTCTCTT
GTTATTCTCTTGGTATGATTCGCAGTACATTACTAAAGATTTGTGATAAC
GTCAGGTTTAATGAATTTCAGGTTTATCAGTTTttatattttagaaattt
aagCTCCA Run BLAST on NCBI protein sequence of TCONS_00016047-protein >TCONS_00016047-protein ID=TCONS_00016047-protein|Name=TCONS_00016047-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp
MAPPDQIIGVILHAIGFIFHATGLYVLLQIKEISQFMIIQRLYLIYLSIS
EGLYCLLFTLFYIGLILMDDEFTNIPFTIGSGMYFFYILIIMLLTFDRVL
NVRSNTNYLHWSHKKAYMAVLLAGFISTVITITLLSSYKTFAQSFEIMSL
YSYPTAGFTFVFFIVFCYTYLIYKIWTHRRNIVLPILQPAEDTEKETQLT
ISPPDNELQGSSSTAVLPLTNSTSVTQTQSKNIEKGNKKSTVNTSARAIL
HREKRKRIYENLKKGVRIPVLLVVTFIAFIIIPDQIHFWSHLLNEKISDD
VFIFFGVIYPLSPICDAIIYIFFQKNTQRFLRRKLSKFF Run BLAST on NCBI transcript from alignment at sc0000225:325251..328334+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016047 ID=TCONS_00016047|Name=TCONS_00016047|organism=Clytia hemisphaerica|type=transcript|length=3084bp|location=Sequence derived from alignment at sc0000225:325251..328334+ (Clytia hemisphaerica)
ATAAAATCTTGGTCTCTAAGAAAAAGCTTTTCATTGTTAGTGAAATCAGG
TCAAGTtgaaatccaatgaaaatacTGATTGTGATGTCATATAACTTCAT
GAAATAAATCTTTCATGGTTTTGCTGGTTTTTCATGGATATTCTAAGCTA
GAAGATTCAATAATTACTTGAATCTGAAGAATCCTGAAAGAATGGCGCCG
CCTGATCAAATCATCGGTGTCATCCTTCACGCAATTGGTTTCATATTCCA
CGCAACAGGACTCTACGTCCTCCTCCAAATCAAAGAAATCAGTCAATTCA
TGATCATTCAACGGTTATATTTAATCTATCTCAGTATCAGTGAAGGACTT
TATTGTCTCCTTTTCACCTTATTCTACATTGGTTTAATCCTGATGGATGA
TGAATTCACCAATATACCTTTCACTATCGGATCTGGAATGTATTTCTTTT
ACATCCTCATTATCATGCTCCTCACATTCGATCGTGTCCTAAATGTACGT
TCAAACACCAATTATCTCCATTGGTCACACAAGAAAGCGTACATGGCTGT
CCTCCTGGCTGGCTTCATCAGCACAGTCATTACCATCACTCTACTTTCAT
CCTATAAAACCTTCGCACAATCATTTGAGATTATGTCATTGTATAGCTAT
CCGACTGCTGGATTCACATTCGTTTTCTTCATAGTCTTCTGTTACACTTA
TCTGATCTATAAGATTTGGACACATCGACGCAACATTGTTCTTCCAATCC
TCCAACCTGCTGAAGACACTGAGAAAGAAACGCAATTGACAATATCTCCT
CCTGACAACGAATTACAAGGTATAGTGTGATCTTTTCTTTAAGAAATCTT
CAACTTTTAAGTGATATGACCGTATTCAAGAGTCTTATGAGAACTTTAAA
Aactttccacccaatacgtctactcacttaaacaatagaaaaagtgacgt
attgggtggaatagaaacagaaaagttgcataatttcgtaaagtcattgc
agtggtgcatatcatggatCTATTCCCTGAATTTAGTCACTTAAGGACCT
CAATCTGCTCATAGTCTAGTGTTCAACTTTAATCTTACTTGAAGTAAATT
AGTATTGATTAATTGCAGTAGCTTTCTCAGGGCTGTCGGGAAATTTGTGT
tatgaaaaagtaaatatcTATTGATAACATTAAAAGATACTTACTTCGTA
ACAAAATTGTGCGATCCTACAAAAATCTTCCTGAGATCACTATTGAATTG
TATCCCCGAAAGAATAATACGCTAGCGGAAAATACGTTCAATGCTTGTTT
CCCTACAAATTGTGATTAATCAATCGACGTGGTTGTTTAAGCGTAGATTC
CGATCAGATGTATAAAGTAAATAAGTCTGTGACCGCAGttgagggcgacc
cgaaggctcctctttcgatagctatctacctgaaggtagggaGGGCGCcg
ctctttctccctggatttctccacttacccttaatcattctcttaattgc
tgagtatTAGGTAGTGAGGCATCAaataccattttgagaatctttggtat
gccCCCATAACTTTGCGAAAATAGATATCCCAGATGCGCTATCACTGCAC
CACAGTTTGCTGTATTGAATTAAATTATATATCTAATTCTCATAGGGTCA
TCATCAACTGCTGTTTTACCCTTAACAAACTCAACTTCCGTGACCCAAAC
ACAAAgcaaaaacatcgaaaaaggaaacaaaaaatcaacGGTCAACACTT
CCGCACGCGCTATTTTACATCGTGAAAAACGGAAACGAATATACGAAAAC
CTGAAGAAAGGTGTTCGAATCCCTGTCCTGCTTGTTGTTACTTTCATTGC
ATTCATCATCATCCCTGATCAAATCCATTTTTGGTCTCATCTATTGAATG
AGAAAATATCTGATGATGTTTTCATCTTCTTTGGTGTGATCTATCCATTA
TCACCGATTTGTGATGCTATCATTTATATCTTCTTTCAGAAGAATACTCA
AAGGTTTCTCCGTAGAAAACTTTCTAAATTCTTTTAAATCAAACTTTTGA
CATCAAACACCACTGTGTCACAAAACCTACCTCACCGGAAAATCCTCCAC
AATTTTAACCCCACTcggaaattgactttgtttgAATCTCAATTTGAAAT
TAGATAGAAAAATAGCACTCTGAAACCATCCAATTGATCGATTCTTGACC
TGGGTACAGTAAAATTTCCATCCCAATTGNATATATAGAATATTGCTTGG
TAAAGATTCAAATTTAACTCCTCCGGGCCTTAAACCAAATAACTGTAATG
CTCACAGCAAGAACTTTTGTTTTTCGATGAAGATGATGAATTTCCAGTCA
TTTTTACGATTCTAAGGTGAATTTCGGAATTTCGAAACATCTTGCGAAAA
ATCATGTCCTATTATAATATTTATACTTCACCCCTGCCTCGCAGTCCCGA
CGGAATTTCTTTTTACAGAGTTGAGATAAATATTCATATGAAAAGCCCGA
TGGGGACCAAAATTGTATTGTTTCCAGTAAGGATAAACCCAGCGGGGATG
GGTTTGAATAGACTATGCCATGGTCTAATACGAATTCGAATAATAAAAAA
TAGCCTCGAACACGCAAATTAGCAGTCGGGCGGAAATTTTGTCCGCGCTG
GCGAAAAATAGTTGGAGGGGTTCAATGTCTTAGACTATAATCAACTCGGT
AGGAAAGAAAACACAGACTATATTTTCCACCGCgcattacgttttataat
atacactTATGTTTTATCataatatcataataatattaCACgtacgatag
catcgtctagggtTTGGATAGAATGTTTTTCCATTGACTTTCGAATGAAG
AAGTCAATGAAGTCAATTTTCAAGTAATGTTGACATTTTAGGGTATTCAG
CTAAACGGGGACAAAATCTTTGGCCGAATTTTTCAATGCACTGGGTCTAT
GACACGGGGGTGTTCTGATTTCTCTTGTTATTCTCTTGGTATGATTCGCA
GTACATTACTAAAGATTTGTGATAACGTCAGGTTTAATGAATTTCAGGTT
TATCAGTTTttatattttagaaatttaagCTCCA Coding sequence (CDS) from alignment at sc0000225:325251..328334+ >TCONS_00016047 ID=TCONS_00016047|Name=TCONS_00016047|organism=Clytia hemisphaerica|type=CDS|length=2040bp|location=Sequence derived from alignment at sc0000225:325251..328334+ (Clytia hemisphaerica)
ATGGCGCCGCCTGATCAAATCATCGGTGTCATCCTTCACGCAATTGGTTT
CATATTCCACGCAACAGGACTCTACGTCCTCCTCCAAATCAAAGAAATCA
GTCAATTCATGATCATTCAACGGTTATATTTAATCTATCTCAGTATCAGT
GAAGGACTTTATTGTCTCCTTTTCACCTTATTCTACATTGGTTTAATCCT
GATGGATGATGAATTCACCAATATACCTTTCACTATCGGATCTGGAATGT
ATTTCTTTTACATCCTCATTATCATGCTCCTCACATTCGATCGTGTCCTA
AATGTACGTTCAAACACCAATTATCTCCATTGGTCACACAAGAAAGCGTA
CATGGCTGTCCTCCTGGCTGGCTTCATCAGCACAGTCATTACCATCACTC
TACTTTCATCCTATAAAACCTTCGCACAATCATTTGAGATTATGTCATTG
TATAGCTATCCGACTGCTGGATTCACATTCGTTTTCTTCATAGTCTTCTG
TTACACTTATCTGATCTATAAGATTTGGACACATCGACGCAACATTGTTC
TTCCAATCCTCCAACCTGCTGAAGACACTGAGAAAGAAACGCAATTGACA
ATATCTCCTCCTGACAACGAATTACAAGGGTCATCATCAACTGCTGTTTT
ACCCTTAACAAACTCAACTTCCGTGACCCAAACACAAAgcaaaaacatcg
aaaaaggaaacaaaaaatcaacGGTCAACACTTCCGCACGCGCTATTTTA
CATCGTGAAAAACGGAAACGAATATACGAAAACCTGAAGAAAGGTGTTCG
AATCCCTGTCCTGCTTGTTGTTACTTTCATTGCATTCATCATCATCCCTG
ATCAAATCCATTTTTGGTCTCATCTATTGAATGAGAAAATATCTGATGAT
GTTTTCATCTTCTTTGGTGTGATCTATCCATTATCACCGATTTGTGATGC
TATCATTTATATCTTCTTTCAGAAGAATACTCAAAGGTTTCTCCGTAGAA
AACTTTCTAAATTCTTTTAAATGGCGCCGCCTGATCAAATCATCGGTGTC
ATCCTTCACGCAATTGGTTTCATATTCCACGCAACAGGACTCTACGTCCT
CCTCCAAATCAAAGAAATCAGTCAATTCATGATCATTCAACGGTTATATT
TAATCTATCTCAGTATCAGTGAAGGACTTTATTGTCTCCTTTTCACCTTA
TTCTACATTGGTTTAATCCTGATGGATGATGAATTCACCAATATACCTTT
CACTATCGGATCTGGAATGTATTTCTTTTACATCCTCATTATCATGCTCC
TCACATTCGATCGTGTCCTAAATGTACGTTCAAACACCAATTATCTCCAT
TGGTCACACAAGAAAGCGTACATGGCTGTCCTCCTGGCTGGCTTCATCAG
CACAGTCATTACCATCACTCTACTTTCATCCTATAAAACCTTCGCACAAT
CATTTGAGATTATGTCATTGTATAGCTATCCGACTGCTGGATTCACATTC
GTTTTCTTCATAGTCTTCTGTTACACTTATCTGATCTATAAGATTTGGAC
ACATCGACGCAACATTGTTCTTCCAATCCTCCAACCTGCTGAAGACACTG
AGAAAGAAACGCAATTGACAATATCTCCTCCTGACAACGAATTACAAGGG
TCATCATCAACTGCTGTTTTACCCTTAACAAACTCAACTTCCGTGACCCA
AACACAAAgcaaaaacatcgaaaaaggaaacaaaaaatcaacGGTCAACA
CTTCCGCACGCGCTATTTTACATCGTGAAAAACGGAAACGAATATACGAA
AACCTGAAGAAAGGTGTTCGAATCCCTGTCCTGCTTGTTGTTACTTTCAT
TGCATTCATCATCATCCCTGATCAAATCCATTTTTGGTCTCATCTATTGA
ATGAGAAAATATCTGATGATGTTTTCATCTTCTTTGGTGTGATCTATCCA
TTATCACCGATTTGTGATGCTATCATTTATATCTTCTTTCAGAAGAATAC
TCAAAGGTTTCTCCGTAGAAAACTTTCTAAATTCTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016047-exon-sc0000225-1491911889:325251..326069 | TCONS_00016047-exon-sc0000225-1491911889:325251..326069 | Clytia hemisphaerica | exon |
| TCONS_00016047-exon-sc0000225-1510915933:325251..326069 | TCONS_00016047-exon-sc0000225-1510915933:325251..326069 | Clytia hemisphaerica | exon |
| TCONS_00016047-exon-sc0000225-1575043694:325251..326069 | TCONS_00016047-exon-sc0000225-1575043694:325251..326069 | Clytia hemisphaerica | exon |
| TCONS_00016047-exon-sc0000225-1491911889:326896..328334 | TCONS_00016047-exon-sc0000225-1491911889:326896..328334 | Clytia hemisphaerica | exon |
| TCONS_00016047-exon-sc0000225-1510915933:326896..328334 | TCONS_00016047-exon-sc0000225-1510915933:326896..328334 | Clytia hemisphaerica | exon |
| TCONS_00016047-exon-sc0000225-1575043694:326896..328334 | TCONS_00016047-exon-sc0000225-1575043694:326896..328334 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000225 | supercontig | sc0000225:325251..328334 + |
Blast
The following BLAST results are available for this feature:
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