TCONS_00016025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016025
Unique NameTCONS_00016025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length500

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016025 ID=TCONS_00016025|Name=TCONS_00016025|organism=Clytia hemisphaerica|type=transcript|length=500bp
TCACCGTCAGCTTTATCGTAtcaacaattttccaaaataaaacattttag
aTTTTGCGCAAAGCAAGATATTCCTGACCCATTGAGATGCAATTTTCTCT
TGGAGAGCATCTTAGGAATAATGTTTTTATGGTCGATCATATAGAGGTTA
TTTTCCTCACAAAACTTATCAATAACAGTATTTATACCTTTTACCATACT
CTTCATCCCTGGTTTATCTTCTCTCACCAAGACTTGTGACATAACCAATT
CAGTTGACGGACTATGATCATTTATCAAATTACGAATTGTGTCAAGGTTC
TCTTTCGTATTGCATCCACTGGTCAGGTCGTTCGTCCCCACATGAAGTAT
GATACGTTTAGGTTTCCTTTTCACCAGCGGTCGAATATGGTGGATCATGT
CGTCACTATTTGCTCCTGGGAAATTCCTCACTGTAACTTTAACATTTTTG
TTGGAGAGTCCATTTCCAACAATATTATTCAACATGCTGTCTCCGCAAAC
Run BLAST on NCBI

protein sequence of TCONS_00016025-protein

>TCONS_00016025-protein ID=TCONS_00016025-protein|Name=TCONS_00016025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
VCGDSMLNNIVGNGLSNKNVKVTVRNFPGANSDDMIHHIRPLVKRKPKRI
ILHVGTNDLTSGCNTKENLDTIRNLINDHSPSTELVMSQVLVREDKPGMK
SMVKGINTVIDKFCEENNLYMIDHKNIIPKMLSKRKLHLNGSGISCFAQN
LKCFILENC
Run BLAST on NCBI

transcript from alignment at sc0000224:152960..153459

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016025 ID=TCONS_00016025|Name=TCONS_00016025|organism=Clytia hemisphaerica|type=transcript|length=500bp|location=Sequence derived from alignment at sc0000224:152960..153459 (Clytia hemisphaerica)
GTTTGCGGAGACAGCATGTTGAATAATATTGTTGGAAATGGACTCTCCAA
CAAAAATGTTAAAGTTACAGTGAGGAATTTCCCAGGAGCAAATAGTGACG
ACATGATCCACCATATTCGACCGCTGGTGAAAAGGAAACCTAAACGTATC
ATACTTCATGTGGGGACGAACGACCTGACCAGTGGATGCAATACGAAAGA
GAACCTTGACACAATTCGTAATTTGATAAATGATCATAGTCCGTCAACTG
AATTGGTTATGTCACAAGTCTTGGTGAGAGAAGATAAACCAGGGATGAAG
AGTATGGTAAAAGGTATAAATACTGTTATTGATAAGTTTTGTGAGGAAAA
TAACCTCTATATGATCGACCATAAAAACATTATTCCTAAGATGCTCTCCA
AGAGAAAATTGCATCTCAATGGGTCAGGAATATCTTGCTTTGCGCAAAAt
ctaaaatgttttattttggaaaattgttgaTACGATAAAGCTGACGGTGA

Coding sequence (CDS) from alignment at sc0000224:152960..153459

>TCONS_00016025 ID=TCONS_00016025|Name=TCONS_00016025|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0000224:152960..153459 (Clytia hemisphaerica)
GTTTGCGGAGACAGCATGTTGAATAATATTGTTGGAAATGGACTCTCCAA
CAAAAATGTTAAAGTTACAGTGAGGAATTTCCCAGGAGCAAATAGTGACG
ACATGATCCACCATATTCGACCGCTGGTGAAAAGGAAACCTAAACGTATC
ATACTTCATGTGGGGACGAACGACCTGACCAGTGGATGCAATACGAAAGA
GAACCTTGACACAATTCGTAATTTGATAAATGATCATAGTCCGTCAACTG
AATTGGTTATGTCACAAGTCTTGGTGAGAGAAGATAAACCAGGGATGAAG
AGTATGGTAAAAGGTATAAATACTGTTATTGATAAGTTTTGTGAGGAAAA
TAACCTCTATATGATCGACCATAAAAACATTATTCCTAAGATGCTCTCCA
AGAGAAAATTGCATCTCAATGGGTCAGGAATATCTTGCTTTGCGCAAAAt
ctaaaatgttttattttggaaaattgttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008952XLOC_008952Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016025-exon-sc0000224-1491911889:152960..153459TCONS_00016025-exon-sc0000224-1491911889:152960..153459Clytia hemisphaericaexon
TCONS_00016025-exon-sc0000224-1510915933:152960..153459TCONS_00016025-exon-sc0000224-1510915933:152960..153459Clytia hemisphaericaexon
TCONS_00016025-exon-sc0000224-1575043694:152960..153459TCONS_00016025-exon-sc0000224-1575043694:152960..153459Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016025-proteinTCONS_00016025-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:152960..153459 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.08299	1.52729	0.890423	0.405153	50.1073	34.5587	18.1822	22.4329	6.76704	10.6752	3.08795	3.88644	1.21624	0	0.969196	0.933012	1.90772	1.87615	0.3888	0.542469	0.943007	0.862436	0.978511	1.14378	1.04717	1.0514	1.67172	0.713642	0.905875	0.667682
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013830SGNH_hydro
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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