|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016012 ID=TCONS_00016012|Name=TCONS_00016012|organism=Clytia hemisphaerica|type=transcript|length=2896bp
AAAATTTCACGCTTGATGGGATATTCATAAAGCCTGGTATTTGCGCCTCG
CCATGCAACGTTTTCTTGACTTTCATGAAAGACGTCTGGGTTTGAAGTAT
TGATTCACTTGAGACTGGTGGATGCACTATCTTCACTAattggcaaaata
ttttgttgGNATTGATTCAGTCGAGACTGGTGGATGCACTATCTTCGCTA
ATTGGCAAAATATTTCGCTGAAATCTGTTTGCTTGTTGTTActactgaaa
ttcaaaaattgatgtttttaagTTACAAACTGATACGATTCATGCTATAA
AACATTTGGTAAAATTTCGTAGATAGACTCGATATCTTACGTGGATAGCT
TAGTAATCCATGACTTTTAGatagtctttcgattgttttcacggtgACCA
CGTCCAGCCGGCTCGGCATTGTAAGAAGAAGCGGGAATCCGAACCTAGAT
ATTTGTTTGTAACGGTGACGTTTTAGACCACTTGATTATCACTCCTTTGA
TAAGAGAACGATTCTTCTTCGTTATCAAAACCAACATCATATGCGTAAAG
CTATCTAATCCTTACCAAACAAGAGAGAATGCTTCGTAGAAGGTCGTCAC
AGCTTTCGAAACTCGCCAAGCGGGAGCGTAAAACGGAGCTGGCGCGTGCT
GGTTTCGATTTTTGCATGCGTACTAAAAAGAATCGCACCTTGAACGAACC
TACCGTTAAAATCGACGTTTACTACTGGAAAGATACTGAATCGTCAAATC
CGCGCGACCGCCGTGCGTCCAAAGCGGACGCCAACACTCAACAACAAAAA
TCGATATGGAGGAGATCGGTCAAAGCAGTTGTTCTTCAAAATAGTATTGT
CAATACGCTCCACCGTAGTGTTTTTGAGAACAAAAATAATGGGAAAAGCT
TACGTCGATTAAGCGTTAAATCCAGCCCTATTGCGGAAGAGCATAAAACG
TTACTGACTCATTCATCATCTAAGAATAATTCTTTCGAGCGATATTCTTC
AATCGAAGAAGAAGAATGCGCCGAGGAAGCTATACTCGCGGAAAATCATT
CCGCCAGTGGTGCTGTGAACGAGAACGGGAAAAGCGATGCCAGGGTCGCT
TTAATTGTCACCGACAAACAACTAGTGGATACGTTGAACGGATTTAACAG
TAGCAACGAAGGGCACTGCCAATCCAAAAACGCCCTCAAACATATGCCTT
CTGATAATCTTCCGCCACTATTGGTTGGGCGGGTCATGACTGATTCGCCT
ACGGAACGAAAAACGTCATTTTCGTGTATCAAGAAGAACCCATTGTTACG
CTCCAAATCTCTAAATCATAACGGAATAAACAATCGTAAAAATGCTATAT
TCAGTGGTACTAATCGGCCAATATTTGATGCAAATGGAGTAAAAGTCCCG
CTTTTAACCCGCTCGCTTTCTTCGGAACGTATCAGCAGTATAAAAGGCCG
TGACCGACAAATGATGAAAGCCAGAAGAAATGCTGTATGcgaagaaaacg
aaagtgagcGGGAAGGCttgactttgattttgaaatattatttgatGTCG
AAAGCAGTTGATATGTATTTTAATTGAAACatatatttttgtttgtttca
agGTGAAGAGGACATTTCGATGGGTTATGGAATTATGGGTTATCGTTTAA
TTTTCTGACAGTAAATGAGAGGGCTTCAATGTCACAATTTCTGCATTTGC
taaacaaaaagaacgacaaatttcgctGTCCACAGCCCGACCTAAATAGT
TTGTCCACTCCAAAGTTTTGATTCCTCTTCGTTTATTACAAAGATTAACG
AATGGTTTTAAAGAACGATTATTATTAATGCAGAAATTGTCAGTAGAACC
CACTGTTATTATGAAATCTTAACCATTCGTAACCATTGTTTTTGTACATA
TGAAGCACCGAACAAAAACTCCTTGACAAGGTTGTATATTTCTTACAAGC
AGAAAATTTTGCAAGGATTTCTTGGTAGGCAGAATTTCGAAAAGCCCCCA
TGTAAAAATTACCATTGAAGTTGACTTTCTTTCATTTAATCTGCAAGGAA
TCAAGGATTTTCTTCGGATTAGAGAAAGATCCAAATTAcattgaaaattt
aacattatCTTTCCAGCAGAGGGaaccaatttttcaattcgaattaatac
agaaagattcgaaaccGAAAGAGAGGACCGTTATATCAAATGTTACCGTT
ATTTTGATTACGATCTGACTAATGCTATGTAAATATGAAGGATGAAGAAA
ATGCGCATCCCCAGACTTTATATTGATATATCAAATCATACatctatccg
cagacacgtgtttcgtcCTTCCCAAAACTCATCAGTGCGGCTTgggtaag
cgagcatagactgctgttgtcaccagagtgctcaaaacactaaATTATAT
ATCAAATCGTATCAGGGGATGCGTGGAGCCTACTTCAAAATTGGAACACT
TTCACGGGAAATCTGTGAAAAGTTAGCTTATCTAGTGTGTCAAAGAATAT
GATATCTGTGGTTGCATACGCTAGTTGACGATTTACAATTATATGACATT
TAGTCTGTACGCAGACTCGATATCTACAGCTTATTTGAAAATTCATTGCC
GTCTGTTTTTATCgtcttttctgatttgagatttttcaaatgaGCGCTGA
GATTTAATGcaggtgagagaggggagacgacgagagaagtgtcgctattt
ataaatcatacttcatcgcagagagGTCTCCGTACTGGAATTTTTGTATC
AAACAGAcgatgcgcacagagtgtactacaaaacgataaacgtgagatac
attCTGGTACAGAGTATACGACATGATGATCACTCGAAATCGAATAATCA
ATTGTATATACATTTTAAAGTTTATAAAGTTTTATATAAGTCTCAT Run BLAST on NCBI transcript from alignment at sc0000224:343830..346725- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016012 ID=TCONS_00016012|Name=TCONS_00016012|organism=Clytia hemisphaerica|type=transcript|length=2896bp|location=Sequence derived from alignment at sc0000224:343830..346725- (Clytia hemisphaerica)
AAAATTTCACGCTTGATGGGATATTCATAAAGCCTGGTATTTGCGCCTCG
CCATGCAACGTTTTCTTGACTTTCATGAAAGACGTCTGGGTTTGAAGTAT
TGATTCACTTGAGACTGGTGGATGCACTATCTTCACTAATTGGCAAAATA
TTTTGTTGGNATTGATTCAGTCGAGACTGGTGGATGCACTATCTTCGCTA
ATTGGCAAAATATTTCGCTGAAATCTGTTTGCTTGTTGTTACTACTGAAA
TTCAAAAATTGATGTTTTTAAGTTACAAACTGATACGATTCATGCTATAA
AACATTTGGTAAAATTTCGTAGATAGACTCGATATCTTACGTGGATAGCT
TAGTAATCCATGACTTTTAGATAGTCTTTCGATTGTTTTCACGGTGACCA
CGTCCAGCCGGCTCGGCATTGTAAGAAGAAGCGGGAATCCGAACCTAGAT
ATTTGTTTGTAACGGTGACGTTTTAGACCACTTGATTATCACTCCTTTGA
TAAGAGAACGATTCTTCTTCGTTATCAAAACCAACATCATATGCGTAAAG
CTATCTAATCCTTACCAAACAAGAGAGAATGCTTCGTAGAAGGTCGTCAC
AGCTTTCGAAACTCGCCAAGCGGGAGCGTAAAACGGAGCTGGCGCGTGCT
GGTTTCGATTTTTGCATGCGTACTAAAAAGAATCGCACCTTGAACGAACC
TACCGTTAAAATCGACGTTTACTACTGGAAAGATACTGAATCGTCAAATC
CGCGCGACCGCCGTGCGTCCAAAGCGGACGCCAACACTCAACAACAAAAA
TCGATATGGAGGAGATCGGTCAAAGCAGTTGTTCTTCAAAATAGTATTGT
CAATACGCTCCACCGTAGTGTTTTTGAGAACAAAAATAATGGGAAAAGCT
TACGTCGATTAAGCGTTAAATCCAGCCCTATTGCGGAAGAGCATAAAACG
TTACTGACTCATTCATCATCTAAGAATAATTCTTTCGAGCGATATTCTTC
AATCGAAGAAGAAGAATGCGCCGAGGAAGCTATACTCGCGGAAAATCATT
CCGCCAGTGGTGCTGTGAACGAGAACGGGAAAAGCGATGCCAGGGTCGCT
TTAATTGTCACCGACAAACAACTAGTGGATACGTTGAACGGATTTAACAG
TAGCAACGAAGGGCACTGCCAATCCAAAAACGCCCTCAAACATATGCCTT
CTGATAATCTTCCGCCACTATTGGTTGGGCGGGTCATGACTGATTCGCCT
ACGGAACGAAAAACGTCATTTTCGTGTATCAAGAAGAACCCATTGTTACG
CTCCAAATCTCTAAATCATAACGGAATAAACAATCGTAAAAATGCTATAT
TCAGTGGTACTAATCGGCCAATATTTGATGCAAATGGAGTAAAAGTCCCG
CTTTTAACCCGCTCGCTTTCTTCGGAACGTATCAGCAGTATAAAAGGCCG
TGACCGACAAATGATGAAAGCCAGAAGAAATGCTGTATGCGAAGAAAACG
AAAGTGAGCGGGAAGGCTTGACTTTGATTTTGAAATATTATTTGATGTCG
AAAGCAGTTGATATGTATTTTAATTGAAACATATATTTTTGTTTGTTTCA
AGGTGAAGAGGACATTTCGATGGGTTATGGAATTATGGGTTATCGTTTAA
TTTTCTGACAGTAAATGAGAGGGCTTCAATGTCACAATTTCTGCATTTGC
TAAACAAAAAGAACGACAAATTTCGCTGTCCACAGCCCGACCTAAATAGT
TTGTCCACTCCAAAGTTTTGATTCCTCTTCGTTTATTACAAAGATTAACG
AATGGTTTTAAAGAACGATTATTATTAATGCAGAAATTGTCAGTAGAACC
CACTGTTATTATGAAATCTTAACCATTCGTAACCATTGTTTTTGTACATA
TGAAGCACCGAACAAAAACTCCTTGACAAGGTTGTATATTTCTTACAAGC
AGAAAATTTTGCAAGGATTTCTTGGTAGGCAGAATTTCGAAAAGCCCCCA
TGTAAAAATTACCATTGAAGTTGACTTTCTTTCATTTAATCTGCAAGGAA
TCAAGGATTTTCTTCGGATTAGAGAAAGATCCAAATTACATTGAAAATTT
AACATTATCTTTCCAGCAGAGGGAACCAATTTTTCAATTCGAATTAATAC
AGAAAGATTCGAAACCGAAAGAGAGGACCGTTATATCAAATGTTACCGTT
ATTTTGATTACGATCTGACTAATGCTATGTAAATATGAAGGATGAAGAAA
ATGCGCATCCCCAGACTTTATATTGATATATCAAATCATACATCTATCCG
CAGACACGTGTTTCGTCCTTCCCAAAACTCATCAGTGCGGCTTGGGTAAG
CGAGCATAGACTGCTGTTGTCACCAGAGTGCTCAAAACACTAAATTATAT
ATCAAATCGTATCAGGGGATGCGTGGAGCCTACTTCAAAATTGGAACACT
TTCACGGGAAATCTGTGAAAAGTTAGCTTATCTAGTGTGTCAAAGAATAT
GATATCTGTGGTTGCATACGCTAGTTGACGATTTACAATTATATGACATT
TAGTCTGTACGCAGACTCGATATCTACAGCTTATTTGAAAATTCATTGCC
GTCTGTTTTTATCGTCTTTTCTGATTTGAGATTTTTCAAATGAGCGCTGA
GATTTAATGCAGGTGAGAGAGGGGAGACGACGAGAGAAGTGTCGCTATTT
ATAAATCATACTTCATCGCAGAGAGGTCTCCGTACTGGAATTTTTGTATC
AAACAGACGATGCGCACAGAGTGTACTACAAAACGATAAACGTGAGATAC
ATTCTGGTACAGAGTATACGACATGATGATCACTCGAAATCGAATAATCA
ATTGTATATACATTTTAAAGTTTATAAAGTTTTATATAAGTCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016012-exon-sc0000224-1575043694:343830..346725 | TCONS_00016012-exon-sc0000224-1575043694:343830..346725 | Clytia hemisphaerica | exon |
| TCONS_00016012-exon-sc0000224-1510915933:343830..346725 | TCONS_00016012-exon-sc0000224-1510915933:343830..346725 | Clytia hemisphaerica | exon |
| TCONS_00016012-exon-sc0000224-1491911889:343830..346725 | TCONS_00016012-exon-sc0000224-1491911889:343830..346725 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000224 | supercontig | sc0000224:343830..346725 - |
Blast
The following BLAST results are available for this feature:
|
