TCONS_00015990 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015990
Unique NameTCONS_00015990
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1296

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015990 ID=TCONS_00015990|Name=TCONS_00015990|organism=Clytia hemisphaerica|type=transcript|length=1296bp
TTCAGGTACTGCTTACTACCGCCTATTCAAATTCGACAAAGCTGAACTAT
GCCATCACCAACATTTACAATTAGCGAAACCGTCTGCTTCTGCATTAGCT
CTGGCATCTAAACGTCCAccaaacaaaaaagaagaaatgatAGCTCTTAC
AAATCTCGGTTGTGTCTATCAAGCAAAACGTGAATTCGAATTAGCATTGC
AAACCTTCAAAAAGGCCTATGATATAGCGGAAGAGTTAGATGAAAACGCT
TCACAAGCACGCATTCTCAATAACATGAGCAACATTTATGAAgccaattt
tgattttgaatctGCAGTTGAATGCTTAAAATCAAGGATGGAATTCATGC
ACGAAGTTGGTGATATCAATGGATCAATCAAGACTTCAGCAGCTCTGGGA
AGTTTGTTTATTCTACTTGGTGATATTAGAGAGAGTATTATGCATTTTGA
GAATGCTGTCATTGGGCTTCGAATGAAAATTGTGAAAGCACAACAAGATG
AATTTGAAGCAAACGCCCAACCACCCGAGGGCGGAGAAGATATGATTGAT
AATGATGCTTACTATGACAAAGGAGTAGCATGAGCCTTGCCACTGATCTA
TTGAACATTAACTGGATTGGGCATCCTTCAAAGAAAATGTGACTTAATTT
ATTGACACTATACCACTGATCTATTGAACATTCACTGGATCGGGCATCCT
TCAAAGAAAATGtgacttaaaaaaaaagtctattcacgataagtgtgcac
tcttttttcatttacctataacttttgaaggaattcttcaatctttatga
atttggtatcattggaaagatattagtgagtggaacaatttgaaataaaa
aaaactttaaaaagattgtaaaaatgaagataaaaatgaaaaagaaaaaa
atgaagatcttgtagaaaagtgctataactatcattttcactgaagtaaa
TCCTTAaacatcgaacgtcatcacagggccggcgaatcaattttgaaagt
ggaggggccaaatagtaagtgtctaaggaggaaCCACcatggttggttga
ttttttttttcttagcaaaaaagtggggggggccatggccccccagGCCC
CCCAGTTTCGCCGGCCCTGCATCACTGTGAAAAAAATTCTCAAAAATAAT
CATTCAGTCAAAAGATATCAAACAAAGTTATAAGCTGATTgacgtctaaa
aacgctgttttctgcagttttttgctgttttttggggtcaatcacttatt
aactttgtatcataactttatattgaataaacattttaatgaaatt
Run BLAST on NCBI

protein sequence of TCONS_00015990-protein

>TCONS_00015990-protein ID=TCONS_00015990-protein|Name=TCONS_00015990-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
SGTAYYRLFKFDKAELCHHQHLQLAKPSASALALASKRPPNKKEEMIALT
NLGCVYQAKREFELALQTFKKAYDIAEELDENASQARILNNMSNIYEANF
DFESAVECLKSRMEFMHEVGDINGSIKTSAALGSLFILLGDIRESIMHFE
NAVIGLRMKIVKAQQDEFEANAQPPEGGEDMIDNDAYYDKGVA
Run BLAST on NCBI

transcript from alignment at sc0000224:416467..419566+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015990 ID=TCONS_00015990|Name=TCONS_00015990|organism=Clytia hemisphaerica|type=transcript|length=3100bp|location=Sequence derived from alignment at sc0000224:416467..419566+ (Clytia hemisphaerica)
TTCAGGTACTGCTTACTACCGCCTATTCAAATTCGACAAAGCTGAACTAT
GCCATCACCAACATTTACAATTAGCGAAACCGTCTGCTTCTGCATTAGCT
CTGGCATCTAAACGTCCAccaaacaaaaaagaagaaatgatAGCTCTTAC
AAATCTCGGTTGTGTCTATCAAGCAAAACGTGAATTCGAATTAGCATTGC
AAACCTTCAAAAAGGCCTATGATATAGCGGAAGAGGTAATACAAAGCTTA
TGGGTTATTCTTTCTGACCCAATTTTAGGTAGACGCTTTTAAAATCCTTG
AGTGaccaaagaaaaaagagaatcTACTGTATTATCAGANTAGGTAGACG
CTTTTAAAATCCTTGAGTGaccaaagaaaaaagagaatcTACTGTATTAT
CAGACCTTTATTAGAAGATTTTCCTCCGAAAAATATACTTTTGAATATAC
TTTTGACCCTGGAAGCACGCGCATGTTTTAGTTTTGATCCTTatgcccgg
ggggggcactcaaggtaaatgacctaccagacgttcggcccttaagggta
ggtttttcatagttcagctagtgcactgtaagggtaggaaattaccaAGC
tcgcactgaactgcactgtaagggtaggaaattgtgataaaaggccaatt
ttttgccaaaattggcacaaaattggtcaattttggaggaaaaattccac
atcttcttggaaaattgcaaaaattttcgcccttacgggcgagaaatttt
gaaaaagtgcactgtaagggtatgatttttcatggaaattcactgcactg
taagggtctgattttagaagtcaaattttgggccgaacgtatggtcgttt
tcagatcgagtgccccccccgggtccTTATGACACCTCTGTCTTTGCGAA
CCGAGAAGGATACGGTATTTTAGCTAGGGCCCACTTTCTATAATTGTAAT
GACCTAAATTAAGTGTCTATGACTAAGATTCATTTTGTACGGGTAGGTAT
CAGATTGCCTTTTAAAATCAACAGGGCGGCTTATAGAATTGGGataaaat
aataatgaaaaacccttttttatcCTCCAGTTAGATGAAAACGCTTCACA
AGCACGCATTCTCAATAACATGAGCAACATTTATGAAgccaattttgatt
ttgaatctGCAGTTGAATGCTTAAAATCAAGGATGGAATTCATGCACGAA
GTTGGTGATATCAATGGATCAATCAAGACTTCAGCAGCTCTGGGAAGTTT
GTTTATTCTACTTGGTGATATTAGAGAGAGTATTATGCATTTTGAGAATG
CTGTCATTGGGCTTCGAATGAAAATTGGTACGTGTAAttttcccagctga
cacacaacgtcgtttcaacgttcatctaaggTTGACAACGTCcatatata
acgttagatgaacgttgtaaTAACGTCGTGTGCTAACTGGGTTACCTGTC
TACTACAACcatatataacgttagatgaacgttgtaaTAACGTCGTGTGC
TAACTGGGTTACCTGTCTACTACAACATTCGGCAGATTCTGTCAAGTCGC
TTTTTCAAGTGGGGTTTGTAcctttacggtgtgacgggattggccctttt
ttaataCGGTATTATGGGATTTGCCGAagaaaagacgggaaaacggtatt
tcagATGTTGACGGTGATTAGCCTTATCTTTTGTCAGTATTCCAGTATTC
TACCctctacaaaccggtgtgacagtgttgtaatttttttcaattttcgg
gattccgggactCAGCCAAAATTTCAACAGTATTTCGAACCGCTACAAAC
CCCATTTTTTACTTGATACTGGAGAGTAGAGTATATATTTTNGATTCCGG
GACTCAGCCAAAATTTCAACAGTATTTCGAACCGCTACAAACCCCATTTT
TTACTTGATACTGGAGAGTAGAGTATATATTTTTTACGTGGATAGCAAAG
TGATATAGTACTTGATTGTCCACGGCTAACCGTGGCTTTACTATCTATAA
ACTGAACGGAATATTAGCAGGAtcggggattcgaaccgcgaaAACCTGAA
TTGTAACGCCTTGGAACAATTGTTCATCTCTCATTGACTCTTCCATCGTA
TAATAATGTATAaataaaactatttcaaattcTAATTGGAATTTTGCGCT
GGATAGAGGGTCTAAGTTTAGATTATTTCATATTGTTTTGGCATGCTTTG
ATTTCAGTATAAACCACTGAAAAACTGTTATGATGAAAATTACAAACCTG
AAAATAATACTGGCATggttttctcttctttttcagTGAAAGCACAACAA
GATGAATTTGAAGCAAACGCCCAACCACCCGAGGGCGGAGAAGATATGAT
TGATAATGATGCTTACTATGACAAAGGAGTAGCATGAGCCTTGCCACTGA
TCTATTGAACATTAACTGGATTGGGCATCCTTCAAAGAAAATGTGACTTA
ATTTATTGACACTATACCACTGATCTATTGAACATTCACTGGATCGGGCA
TCCTTCAAAGAAAATGtgacttaaaaaaaaagtctattcacgataagtgt
gcactcttttttcatttacctataacttttgaaggaattcttcaatcttt
atgaatttggtatcattggaaagatattagtgagtggaacaatttgaaat
aaaaaaaactttaaaaagattgtaaaaatgaagataaaaatgaaaaagaa
aaaaatgaagatcttgtagaaaagtgctataactatcattttcactgaag
taaaTCCTTAaacatcgaacgtcatcacagggccggcgaatcaattttga
aagtggaggggccaaatagtaagtgtctaaggaggaaCCACcatggttgg
ttgattttttttttcttagcaaaaaagtggggggggccatggccccccag
GCCCCCCAGTTTCGCCGGCCCTGCATCACTGTGAAAAAAATTCTCAAAAA
TAATCATTCAGTCAAAAGATATCAAACAAAGTTATAAGCTGATTgacgtc
taaaaacgctgttttctgcagttttttgctgttttttggggtcaatcact
tattaactttgtatcataactttatattgaataaacattttaatgaaatt

Coding sequence (CDS) from alignment at sc0000224:416467..419566+

>TCONS_00015990 ID=TCONS_00015990|Name=TCONS_00015990|organism=Clytia hemisphaerica|type=CDS|length=1746bp|location=Sequence derived from alignment at sc0000224:416467..419566+ (Clytia hemisphaerica)
TCAGGTACTGCTTACTACCGCCTATTCAAATTCGACAAAGCTGAACTATG
CCATCACCAACATTTACAATTAGCGAAACCGTCTGCTTCTGCATTAGCTC
TGGCATCTAAACGTCCAccaaacaaaaaagaagaaatgatAGCTCTTACA
AATCTCGGTTGTGTCTATCAAGCAAAACGTGAATTCGAATTAGCATTGCA
AACCTTCAAAAAGGCCTATGATATAGCGGAAGAGTTAGATGAAAACGCTT
CACAAGCACGCATTCTCAATAACATGAGCAACATTTATGAAgccaatttt
gattttgaatctGCAGTTGAATGCTTAAAATCAAGGATGGAATTCATGCA
CGAAGTTGGTGATATCAATGGATCAATCAAGACTTCAGCAGCTCTGGGAA
GTTTGTTTATTCTACTTGGTGATATTAGAGAGAGTATTATGCATTTTGAG
AATGCTGTCATTGGGCTTCGAATGAAAATTGTGAAAGCACAACAAGATGA
ATTTGAAGCAAACGCCCAACCACCCGAGGGCGGAGAAGATATGATTGATA
ATGATGCTTACTATGACAAAGGAGTAGCATGATCAGGTACTGCTTACTAC
CGCCTATTCAAATTCGACAAAGCTGAACTATGCCATCACCAACATTTACA
ATTAGCGAAACCGTCTGCTTCTGCATTAGCTCTGGCATCTAAACGTCCAc
caaacaaaaaagaagaaatgatAGCTCTTACAAATCTCGGTTGTGTCTAT
CAAGCAAAACGTGAATTCGAATTAGCATTGCAAACCTTCAAAAAGGCCTA
TGATATAGCGGAAGAGTTAGATGAAAACGCTTCACAAGCACGCATTCTCA
ATAACATGAGCAACATTTATGAAgccaattttgattttgaatctGCAGTT
GAATGCTTAAAATCAAGGATGGAATTCATGCACGAAGTTGGTGATATCAA
TGGATCAATCAAGACTTCAGCAGCTCTGGGAAGTTTGTTTATTCTACTTG
GTGATATTAGAGAGAGTATTATGCATTTTGAGAATGCTGTCATTGGGCTT
CGAATGAAAATTGTGAAAGCACAACAAGATGAATTTGAAGCAAACGCCCA
ACCACCCGAGGGCGGAGAAGATATGATTGATAATGATGCTTACTATGACA
AAGGAGTAGCATGATCAGGTACTGCTTACTACCGCCTATTCAAATTCGAC
AAAGCTGAACTATGCCATCACCAACATTTACAATTAGCGAAACCGTCTGC
TTCTGCATTAGCTCTGGCATCTAAACGTCCAccaaacaaaaaagaagaaa
tgatAGCTCTTACAAATCTCGGTTGTGTCTATCAAGCAAAACGTGAATTC
GAATTAGCATTGCAAACCTTCAAAAAGGCCTATGATATAGCGGAAGAGTT
AGATGAAAACGCTTCACAAGCACGCATTCTCAATAACATGAGCAACATTT
ATGAAgccaattttgattttgaatctGCAGTTGAATGCTTAAAATCAAGG
ATGGAATTCATGCACGAAGTTGGTGATATCAATGGATCAATCAAGACTTC
AGCAGCTCTGGGAAGTTTGTTTATTCTACTTGGTGATATTAGAGAGAGTA
TTATGCATTTTGAGAATGCTGTCATTGGGCTTCGAATGAAAATTGTGAAA
GCACAACAAGATGAATTTGAAGCAAACGCCCAACCACCCGAGGGCGGAGA
AGATATGATTGATAATGATGCTTACTATGACAAAGGAGTAGCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008931XLOC_008931Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015990-proteinTCONS_00015990-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015990-exon-sc0000224-1491911889:416467..416701TCONS_00015990-exon-sc0000224-1491911889:416467..416701Clytia hemisphaericaexon
TCONS_00015990-exon-sc0000224-1510915933:416467..416701TCONS_00015990-exon-sc0000224-1510915933:416467..416701Clytia hemisphaericaexon
TCONS_00015990-exon-sc0000224-1575043694:416467..416701TCONS_00015990-exon-sc0000224-1575043694:416467..416701Clytia hemisphaericaexon
TCONS_00015990-exon-sc0000224-1491911889:417547..417793TCONS_00015990-exon-sc0000224-1491911889:417547..417793Clytia hemisphaericaexon
TCONS_00015990-exon-sc0000224-1510915933:417547..417793TCONS_00015990-exon-sc0000224-1510915933:417547..417793Clytia hemisphaericaexon
TCONS_00015990-exon-sc0000224-1575043694:417547..417793TCONS_00015990-exon-sc0000224-1575043694:417547..417793Clytia hemisphaericaexon
TCONS_00015990-exon-sc0000224-1491911889:418753..419566TCONS_00015990-exon-sc0000224-1491911889:418753..419566Clytia hemisphaericaexon
TCONS_00015990-exon-sc0000224-1510915933:418753..419566TCONS_00015990-exon-sc0000224-1510915933:418753..419566Clytia hemisphaericaexon
TCONS_00015990-exon-sc0000224-1575043694:418753..419566TCONS_00015990-exon-sc0000224-1575043694:418753..419566Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:416467..419566 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.65714	1.07056	2.24613	3.00193	5.78141	3.68933	6.34149	6.78075	7.35643	5.29395	4.87273	5.71799	6.98955	5.97683	5.50919	8.25319	5.02247	5.92253	6.58934	4.52677	7.53873	7.60273	6.47034	7.06693	3.38809	3.84367	11.0806	6.64928	8.52419	8.69918
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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