TCONS_00015960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015960
Unique NameTCONS_00015960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length962

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015960 ID=TCONS_00015960|Name=TCONS_00015960|organism=Clytia hemisphaerica|type=transcript|length=962bp
GAAACTATGGATTTTAACTTGCACAATTGTCATATTTGTTTGTTACAGAA
ATATCATATTATTTTCTGACTGGATGTTTTGTTTCATGTGACACTCCTCT
TTTGTTATGGTGAAAATTGGTTTACAAGTCAAAGCTCAACTTGAGTTTTT
AACAGATCTTAAGCCAGAAAGTGAAGACTTTCGTTGGTATATTAAGGTGA
AATGTTTAAATTGTGGGGAAGAAAGCAAATCCTTTATATATCTCACTTTA
CTTGAGAGTAATCCTCTGAAAGGTGGAAGGGGACAAGCTAGTATGGTTTC
CAAATGCAAACTGTGCTCACGGGAAAACTCAATTGacATTTTGAAAGATA
CTATATCTCCATATACTttCGAGGATAGTGaatctttcaaaacaattgTT
GCTTTTGAATGCCGTGGTATGGAGCCTGTTGAATTCTCACCAAGGGCTGG
TTGGGTAGCGAAAGGTGCTGAGACAACGTCTTCATTTACAGTTGATCTGA
CTGAGgGTGATTGGTGTGATTTTGATGAGAGATCTGGGGAGAGTGTTGGT
ATTTACGAGATTGAacataaattccaaaaatgctGATCACTAAAACGATA
CCATTTTAATGTATATTGTTATTGTTTGTATGAGAGAGGAGATGGGTGAG
AGGTGCTTAGTTAGAGAGAAATTAATGGGTAACTTTTACTcacattttgt
aaaaatttgaatttgcttaCGTCAACAAAATAgaggaaagaaatattttt
agttATTTATAAAATTAATAATATTCGAGATATTTGATGCACAGGTATTT
CTAGGATAAGTGAAAACCACTCTAAAAGAAATTAGTCTTTAATACTACTG
ACAAGATTTCCACATGAAAGTAAAATAAGGGTGCAAACCTAACAACTATA
AATTAAAAACTTATTTCTCTATATCCATGGTTctaagaaaacaatttttt
tccagaGACACA
Run BLAST on NCBI

protein sequence of TCONS_00015960-protein

>TCONS_00015960-protein ID=TCONS_00015960-protein|Name=TCONS_00015960-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MVKIGLQVKAQLEFLTDLKPESEDFRWYIKVKCLNCGEESKSFIYLTLLE
SNPLKGGRGQASMVSKCKLCSRENSIDILKDTISPYTFEDSESFKTIVAF
ECRGMEPVEFSPRAGWVAKGAETTSSFTVDLTEGDWCDFDERSGESVGIY
EIEHKFQKC
Run BLAST on NCBI

transcript from alignment at sc0000224:42690..51513+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015960 ID=TCONS_00015960|Name=TCONS_00015960|organism=Clytia hemisphaerica|type=transcript|length=8824bp|location=Sequence derived from alignment at sc0000224:42690..51513+ (Clytia hemisphaerica)
GAAACTATGGATTTTAACTTGCACAATTGTCATATTTGTTTGTTACAGAA
ATATCATATTATTTTCTGACTGGATGTTTTGTTTCATGTGACACTCCTCT
TTTGTTATGGTGGTAAGTTTCtaatttgcttttttttcttctgctAAGTG
ACTGCAGTTCTTAGGCAGAGAAATATTATATCAACTTGGGGATTCATGCA
GGGGGGTCGGTTTCCTAATAAGTGCCGAAAATGTATAACTAACATGTTTT
TGCAAATTGAGTTTTGTCCCGCACCCTTGGTACAAAGTTGAAATATGCCT
TCAATGTAGGTAGACCACCTTCATTACCTGAAGCCGGGAAATACCTGTCA
AAATACTGATATTGAAGGGGAAGtatagacgatcctatcgtctacacaag
atcactaaaaaagggaatagtttaggagaggcgtgataaattcgagtgga
gtaagcagtggcggagatgtttacagtgtagacgataccaatttggcgca
aaagcaaaaaactgaaaaaagccgTGGATTTGCCTTTGCGTATTATTGAC
GATTCGGTGCggccattttcaaaacattcgaaaacgcaCAGCATCAACTT
TTACTTTTCTACACTGGCTGaaggatttttttgcatgaaattctTTTCAT
TATGGGTTTATTTTGGAGCTCAAATTTAGAATgttagtttgcaatttatt
tgcaacaagtatttaaattttaagagcCATGCTTCATATGTTTAACATAC
TTTTTGACTTCAGAAACACAAACACTAACAGGtttgttgttaatattttt
tacttccaaccttcatttttcttctttttaactaCAGTAATTTAACTCAA
AGACACCACACTTGCTGTACATTTAGTATCATTTTACACATTTCCCTTCT
GataaaaacagctttttacctTCTTTTCGATACTccctatttttgttttg
ttagaaaTTCTACAAGTTactaatttttaacttttatattttttatattt
gatatgTTCAGTAGTATAGAAGTATAATTATAGCCACAGGaaatcatttt
gaagttttttgaagATGGTATCAATTTGAAGGTAGACTATGTGCTTCTGG
CAGCTAGAGAAGAGTTTTATTCTGATACAAAAAATCATTACAGGATAGTT
TGACAATTGAAGACAAtttgtttacaatattttcCACCATACATATTCTA
TATTTAAAGATGATTATATTCTGGCCTTAGGTGGAAGTTGTAGACATTCA
TGGTACAGCAATATGCTGTTATTGCTACCATACAATGCTACTTGAAAGTG
TTATCCAAatcctagctggaaaaaatgattatttaaaaaaagataaaata
ttttgttttctcaGACATATCGTACTACATATTCTAGAAATGGCCTTTCA
ATTGCTTTTAATCGGCTGATTGGAGTAAAAACTGAGCTTTTTCAGGGTTT
CGagaaattaaaccaaaaaatgccaGAACAAATTCTCANNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNcgttttgttccaaaactctaccgccacttttt
tcccgtaaaccgccctgacgccctaactctttctcgcatttactttaaac
ggacgatagcatcgtctaggggAAGTATCACGCCAAAAATACATTTTAca
tgaaaaatattcaattctATTCTTTTTCACTTTAGAAAATTGGTTTACAA
GTCAAAGCTCAACTTGAGTTTTTAACAGATCTTAAGCCAGAAAGTGAAGA
CTTTCGTTGGTATATTAAGGTATCTATAAAATtaatatactttaatcgta
gaaattttagcgtgactaattttagcgttttagcgaattttccctatttt
cgctaaaattaatctcgctaaaacacgccgaatcgacagatcgctaaaat
ttatccgcgcgaaatttctggttatattgtcttgatacatttttatcaat
agaaagggtttcagtgcaaagaaatgctagaaaacgaattgtaatacgag
tattgtctaaaatttatccacacaaacttttttgaaatcgtgattcgcta
aaataaatccaaaagaaatcaagattttcctgactcgctaatatgtacgc
taaaattagtctcgctaaaatttctacgattaaagtactcTTGATCTAGA
TTTCTGGCTTTTCCAAAGCGCGAGGTTGGTCAgtcgaaaaatgtttttat
tttgaggaTTTATGTGAGTTTAAGTTTCTAGGAGGTAAGtcgaaaaagct
ggttttttttatttcaacaggGCATATTATATTAATGATTGACTTAAATA
TTATAAGTTTGATTTTGATCTCTTTTAAAAGGAATATTGTCAGAATTTCT
CTAACATAGACTTTAGTTGTTATTGAGACATTCtctatttcttttctttc
actGCTTAGGTGAAATGTTTAAATTGTGGGGAAGAAAGCAAATCCTTTAT
ATATCTCACTTTACTTGTAAGTACAgcacctttttcaaaaaaatatctac
TCTAAACAAGTTATCAAGTTataatttttgatagaattcgggAAACAAAC
GGGAGTGAAATAATTGttatcataaagaaaaaactcaaaaaagatcagaa
aatttagattgattgaaaatgaagaagaagaaaatcaacttaaattcaat
aattaTGTTATAatcatcattttcacacgagtgattcCTTGATCTTTTAA
ACATCATCAATATCGAAAGACTTTAGTAAAATTTGTATGTTAATATTGAC
CCTTATTTTTACAGGTATATTCAATCTCTTCAAAAAGAAATCTTTCTGGT
TTTCTTTTCAAAGCGGTTTAAATAATAAACTACTACACAAAAtgactttt
atttcttttattttccttgTTCTAGGAGAGTAATCCTCTGAAAGGTGGAA
GGGGACAAGCTAGTATGGTTTCCAAATGCAAACTGTGCTCACGGGAAAAC
TCAATTGGTACGTGAGTTGACAGCAGTAGACCtaaccaacgatgtaaaaa
taatagataaccaactacctctcccaagagaacaaccattgttttcctat
tgaaatgagcactcctttaaaaagctctgtgtgtagtgcttgttatgctt
ttagctagattttgacacactttttgacatccactgaagaTATTGTTGGT
TATAGTTATTGTCACTTGACCCCTACATTTAGGGGGTGGGTCGGTTAGTc
tggaaaataattattttgatcaTTCCTATGAATAGTGATATTTTTATGAA
TGGGTTGAAACTTAATTATTTTAAGAGcgtgaaaaatgttgaaaaaattt
tcttcaacaaatcaaatcaaatttttgggTTAGTAGGTTTTAGGTAGGGT
CAGTCGGATGAAGGCAAACCAACAAATTTTTAAGTTTAGCCTTTAAGTCA
TTTCAAGTTAACAGCTAGGATCTTACTATTTTAAACTGTTTGTCTGTTTG
TGAAATAAAGCTGATATGATATTGTTTAGTACTGTTTATAGATGTAAAAC
ACAAGAATAATAGAGATCAAATTAGCTCATAAAATGatcatttctttttt
cagacATTTTGAAAGATACTATATCTCCATATACTGTAAGTGgtttctat
ttttgaaatccTGGATTTTCAACTTACACAAACCAACGACATAATAGACC
AGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcatgta
ctacctgtgtactataattggggtgttgggtccaaaatcgattttgattt
ttactacctgtgtaccaaaataggggtgttgggCCCAAAATCGGGGTGTT
GGGCCCAAAATCGATGTTAACAGtatggaaacaaaaaggttcagaaatta
tctgctaaaatagaaatgtaaagttgttctattataaattgatcaagcca
agtttgtccANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGAACATTCAAAT
TCGAACATTCGAACAtcagaggtgccaactctcacgcatggGGTGTGAGA
CTCACgcatttccacatggtctcacgcaatttttgaatagtttgatttct
cacgcattttggatttttgagaaaaattctcctgtttttccgatttttgg
aaaaacgttttcccgatttcccgatttcccgagtttccgaaaaaaagttt
ccccgatttcccgatttttgtaaaaatgtttacccgattttccgattttt
ccaGGTAGTACCCAGTAGTAAatgggggtatggggtggtatGGGTTTTTT
CCCAGGTACTACCCGGTAGTAaatagggggtatggggtggtttttggatt
tttccatgtagtatggtgtacttcaggggtgggtgggtgtcaagttttga
aaaataccttgtagtacacatacatgccgccttctagtacactgaccccc
cctgaATAGACTACAATAGACTACTTTGTTGAATAACCAGAATCCttaat
tttagtgatttttttgttttaagtttattttctttaatcAATTGAGTGTT
TGATAAACAGATTTTAAAATAAAGTCAAGTGCTTAGGATAAGATGGAGCT
TTAttgtatttgttttgatttttttagttCGAGGATAGTGaatctttcaa
aacaattgTTGCTTTTGAATGCCGTGGTATGGAGCCTGTTGAATTCTCAC
CAAGGGTATGCCTTTTTTTGTTTAAGGTGTGAATACTGGTGAATAACTGA
GCTAGCTTTAGCTACTTTTCTTTGTCTCGAAGACTGTTATTCTCAATGAA
CTGATTTAAGTACTCCTCTAACATGGTTCATGTTTCCATATAGACTAAAT
CAATGCAGGAACAGCCCAGTCTTGTACCAAAGCTTTAGAAATGAGAATTC
GACAGGTAGAAATGTGTTAATAGCTTACAATTCTCCTTTCAATTACCATA
AGATTACATAattgttgttattatttttcattcagGCTGGTTGGGTAGCG
AAAGGTGCTGAGACAACGTCTTCATTTACAGTTGATCTGACTGAGGTACT
GTTGCAAAATTTCTCCACTTTCCCTTTCGGTGTGTACTAAACTAGATGGG
ATCCTGTGGGGGAATCAACTTTTTTCCTGGAGGAAATTGCAGGAATTACA
GAAGTtcgatataatatttcaaatatcatgcaaaatatagCAAATCGTTG
GGTCactaaaatattcttccaatGGGGGGACCCTGGAAAAAGGGTAGGTG
GGGGAGAAGACCAAATAGGGGTTTAAGGCCCCAGATGGAGGACCTGAAAA
CCTGGAGGACACCATGAAATGTACTGAGTTAGCATACTACTATCTGTGGA
ATGTGACCCAAAGGCTCCTTTTTCcataacttttaaatttttcactctCC
CAGAGGAACAAAGTTTCTAGAAGGGTCAGCACCTCCTTATGTAGGAAGAC
TCTGTCTTAAGTGATAGACCCCTTTCAGACGTGGAATTTCTTTTCATATT
GAGGAAAAACCCCCTCATGTAACAACAAATAAATGTCAACTCCTTCATAG
CTAGGAAAAAGGAAACCAAAAGACCCACCCCTTACaatgacttttgaaaa
tctcaGACCCACCATAGGCTAACCGGTTGGTAATGGTGGATAATGTCCCC
TCTTTATCTCTCTAATTAAAACCCTTAGCATAAGAAAATGTATTAActct
atttttatttaatttaggGTGATTGGTGTGATTTTGATGAGAGATCTGGG
GAGAGTGTTGGTATTTACGAGATTGAacataaattccaaaaatgctGATC
ACTAAAACGATACCATTTTAATGTATATTGTTATTGTTTGTATGAGAGAG
GAGATGGGTGAGAGGTGCTTAGTTAGAGAGAAATTAATGGGTAACTTTTA
CTcacattttgtaaaaatttgaatttgcttaCGTCAACAAAATAgaggaa
agaaatatttttagttATTTATAAAATTAATAATATTCGAGATATTTGAT
GCACAGGTATTTCTAGGATAAGTGAAAACCACTCTAAAAGAAATTAGTCT
TTAATACTACTGACAAGATTTCCACATGAAAGTAAAATAAGGGTGCAAAC
CTAACAACTATAAATTAAAAACTTATTTCTCTATATCCATGGTTctaaga
aaacaatttttttccagaGACACA

Coding sequence (CDS) from alignment at sc0000224:42690..51513+

>TCONS_00015960 ID=TCONS_00015960|Name=TCONS_00015960|organism=Clytia hemisphaerica|type=CDS|length=3840bp|location=Sequence derived from alignment at sc0000224:42690..51513+ (Clytia hemisphaerica)
ATGGTGAAAATTGGTTTACAAGTCAAAGCTCAACTTGAGTTTTTAACAGA
TCTTAAGCCAGAAAGTGAAGACTTTCGTTGGTATATTAAGGTGAAATGTT
TAAATTGTGGGGAAGAAAGCAAATCCTTTATATATCTCACTTTACTTGAG
AGTAATCCTCTGAAAGGTGGAAGGGGACAAGCTAGTATGGTTTCCAAATG
CAAACTGTGCTCACGGGAAAACTCAATTGacATTTTGAAAGATACTATAT
CTCCATATACTttCGAGGATAGTGaatctttcaaaacaattgTTGCTTTT
GAATGCCGTGGTATGGAGCCTGTTGAATTCTCACCAAGGGCTGGTTGGGT
AGCGAAAGGTGCTGAGACAACGTCTTCATTTACAGTTGATCTGACTGAGg
GTGATTGGTGTGATTTTGATGAGAGATCTGGGGAGAGTGTTGGTATTTAC
GAGATTGAacataaattccaaaaatgctGAATGGTGAAAATTGGTTTACA
AGTCAAAGCTCAACTTGAGTTTTTAACAGATCTTAAGCCAGAAAGTGAAG
ACTTTCGTTGGTATATTAAGGTGAAATGTTTAAATTGTGGGGAAGAAAGC
AAATCCTTTATATATCTCACTTTACTTGAGAGTAATCCTCTGAAAGGTGG
AAGGGGACAAGCTAGTATGGTTTCCAAATGCAAACTGTGCTCACGGGAAA
ACTCAATTGacATTTTGAAAGATACTATATCTCCATATACTttCGAGGAT
AGTGaatctttcaaaacaattgTTGCTTTTGAATGCCGTGGTATGGAGCC
TGTTGAATTCTCACCAAGGGCTGGTTGGGTAGCGAAAGGTGCTGAGACAA
CGTCTTCATTTACAGTTGATCTGACTGAGgGTGATTGGTGTGATTTTGAT
GAGAGATCTGGGGAGAGTGTTGGTATTTACGAGATTGAacataaattcca
aaaatgctGAATGGTGAAAATTGGTTTACAAGTCAAAGCTCAACTTGAGT
TTTTAACAGATCTTAAGCCAGAAAGTGAAGACTTTCGTTGGTATATTAAG
GTGAAATGTTTAAATTGTGGGGAAGAAAGCAAATCCTTTATATATCTCAC
TTTACTTGAGAGTAATCCTCTGAAAGGTGGAAGGGGACAAGCTAGTATGG
TTTCCAAATGCAAACTGTGCTCACGGGAAAACTCAATTGacATTTTGAAA
GATACTATATCTCCATATACTttCGAGGATAGTGaatctttcaaaacaat
tgTTGCTTTTGAATGCCGTGGTATGGAGCCTGTTGAATTCTCACCAAGGG
CTGGTTGGGTAGCGAAAGGTGCTGAGACAACGTCTTCATTTACAGTTGAT
CTGACTGAGgGTGATTGGTGTGATTTTGATGAGAGATCTGGGGAGAGTGT
TGGTATTTACGAGATTGAacataaattccaaaaatgctGAATGGTGAAAA
TTGGTTTACAAGTCAAAGCTCAACTTGAGTTTTTAACAGATCTTAAGCCA
GAAAGTGAAGACTTTCGTTGGTATATTAAGGTGAAATGTTTAAATTGTGG
GGAAGAAAGCAAATCCTTTATATATCTCACTTTACTTGAGAGTAATCCTC
TGAAAGGTGGAAGGGGACAAGCTAGTATGGTTTCCAAATGCAAACTGTGC
TCACGGGAAAACTCAATTGacATTTTGAAAGATACTATATCTCCATATAC
TttCGAGGATAGTGaatctttcaaaacaattgTTGCTTTTGAATGCCGTG
GTATGGAGCCTGTTGAATTCTCACCAAGGGCTGGTTGGGTAGCGAAAGGT
GCTGAGACAACGTCTTCATTTACAGTTGATCTGACTGAGgGTGATTGGTG
TGATTTTGATGAGAGATCTGGGGAGAGTGTTGGTATTTACGAGATTGAac
ataaattccaaaaatgctGAATGGTGAAAATTGGTTTACAAGTCAAAGCT
CAACTTGAGTTTTTAACAGATCTTAAGCCAGAAAGTGAAGACTTTCGTTG
GTATATTAAGGTGAAATGTTTAAATTGTGGGGAAGAAAGCAAATCCTTTA
TATATCTCACTTTACTTGAGAGTAATCCTCTGAAAGGTGGAAGGGGACAA
GCTAGTATGGTTTCCAAATGCAAACTGTGCTCACGGGAAAACTCAATTGa
cATTTTGAAAGATACTATATCTCCATATACTttCGAGGATAGTGaatctt
tcaaaacaattgTTGCTTTTGAATGCCGTGGTATGGAGCCTGTTGAATTC
TCACCAAGGGCTGGTTGGGTAGCGAAAGGTGCTGAGACAACGTCTTCATT
TACAGTTGATCTGACTGAGgGTGATTGGTGTGATTTTGATGAGAGATCTG
GGGAGAGTGTTGGTATTTACGAGATTGAacataaattccaaaaatgctGA
ATGGTGAAAATTGGTTTACAAGTCAAAGCTCAACTTGAGTTTTTAACAGA
TCTTAAGCCAGAAAGTGAAGACTTTCGTTGGTATATTAAGGTGAAATGTT
TAAATTGTGGGGAAGAAAGCAAATCCTTTATATATCTCACTTTACTTGAG
AGTAATCCTCTGAAAGGTGGAAGGGGACAAGCTAGTATGGTTTCCAAATG
CAAACTGTGCTCACGGGAAAACTCAATTGacATTTTGAAAGATACTATAT
CTCCATATACTttCGAGGATAGTGaatctttcaaaacaattgTTGCTTTT
GAATGCCGTGGTATGGAGCCTGTTGAATTCTCACCAAGGGCTGGTTGGGT
AGCGAAAGGTGCTGAGACAACGTCTTCATTTACAGTTGATCTGACTGAGg
GTGATTGGTGTGATTTTGATGAGAGATCTGGGGAGAGTGTTGGTATTTAC
GAGATTGAacataaattccaaaaatgctGAATGGTGAAAATTGGTTTACA
AGTCAAAGCTCAACTTGAGTTTTTAACAGATCTTAAGCCAGAAAGTGAAG
ACTTTCGTTGGTATATTAAGGTGAAATGTTTAAATTGTGGGGAAGAAAGC
AAATCCTTTATATATCTCACTTTACTTGAGAGTAATCCTCTGAAAGGTGG
AAGGGGACAAGCTAGTATGGTTTCCAAATGCAAACTGTGCTCACGGGAAA
ACTCAATTGacATTTTGAAAGATACTATATCTCCATATACTttCGAGGAT
AGTGaatctttcaaaacaattgTTGCTTTTGAATGCCGTGGTATGGAGCC
TGTTGAATTCTCACCAAGGGCTGGTTGGGTAGCGAAAGGTGCTGAGACAA
CGTCTTCATTTACAGTTGATCTGACTGAGgGTGATTGGTGTGATTTTGAT
GAGAGATCTGGGGAGAGTGTTGGTATTTACGAGATTGAacataaattcca
aaaatgctGAATGGTGAAAATTGGTTTACAAGTCAAAGCTCAACTTGAGT
TTTTAACAGATCTTAAGCCAGAAAGTGAAGACTTTCGTTGGTATATTAAG
GTGAAATGTTTAAATTGTGGGGAAGAAAGCAAATCCTTTATATATCTCAC
TTTACTTGAGAGTAATCCTCTGAAAGGTGGAAGGGGACAAGCTAGTATGG
TTTCCAAATGCAAACTGTGCTCACGGGAAAACTCAATTGacATTTTGAAA
GATACTATATCTCCATATACTttCGAGGATAGTGaatctttcaaaacaat
tgTTGCTTTTGAATGCCGTGGTATGGAGCCTGTTGAATTCTCACCAAGGG
CTGGTTGGGTAGCGAAAGGTGCTGAGACAACGTCTTCATTTACAGTTGAT
CTGACTGAGgGTGATTGGTGTGATTTTGATGAGAGATCTGGGGAGAGTGT
TGGTATTTACGAGATTGAacataaattccaaaaatgctGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008920XLOC_008920Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015960-exon-sc0000224-1491911889:42690..42801TCONS_00015960-exon-sc0000224-1491911889:42690..42801Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1510915933:42690..42801TCONS_00015960-exon-sc0000224-1510915933:42690..42801Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1575043694:42690..42801TCONS_00015960-exon-sc0000224-1575043694:42690..42801Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1491911889:46725..46808TCONS_00015960-exon-sc0000224-1491911889:46725..46808Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1510915933:46725..46808TCONS_00015960-exon-sc0000224-1510915933:46725..46808Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1575043694:46725..46808TCONS_00015960-exon-sc0000224-1575043694:46725..46808Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1491911889:47449..47505TCONS_00015960-exon-sc0000224-1491911889:47449..47505Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1510915933:47449..47505TCONS_00015960-exon-sc0000224-1510915933:47449..47505Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1575043694:47449..47505TCONS_00015960-exon-sc0000224-1575043694:47449..47505Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1491911889:47915..47996TCONS_00015960-exon-sc0000224-1491911889:47915..47996Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1510915933:47915..47996TCONS_00015960-exon-sc0000224-1510915933:47915..47996Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1575043694:47915..47996TCONS_00015960-exon-sc0000224-1575043694:47915..47996Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1491911889:48593..48624TCONS_00015960-exon-sc0000224-1491911889:48593..48624Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1510915933:48593..48624TCONS_00015960-exon-sc0000224-1510915933:48593..48624Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1575043694:48593..48624TCONS_00015960-exon-sc0000224-1575043694:48593..48624Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1491911889:49967..50044TCONS_00015960-exon-sc0000224-1491911889:49967..50044Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1510915933:49967..50044TCONS_00015960-exon-sc0000224-1510915933:49967..50044Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1575043694:49967..50044TCONS_00015960-exon-sc0000224-1575043694:49967..50044Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1491911889:50325..50384TCONS_00015960-exon-sc0000224-1491911889:50325..50384Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1510915933:50325..50384TCONS_00015960-exon-sc0000224-1510915933:50325..50384Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1575043694:50325..50384TCONS_00015960-exon-sc0000224-1575043694:50325..50384Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1491911889:51057..51513TCONS_00015960-exon-sc0000224-1491911889:51057..51513Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1510915933:51057..51513TCONS_00015960-exon-sc0000224-1510915933:51057..51513Clytia hemisphaericaexon
TCONS_00015960-exon-sc0000224-1575043694:51057..51513TCONS_00015960-exon-sc0000224-1575043694:51057..51513Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015960-proteinTCONS_00015960-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:42690..51513 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
103.041	108.659	124.563	131.469	44.5398	29.6228	44.2796	47.692	35.3754	31.3268	38.3781	25.6362	26.4466	25.9356	26.165	25.6673	34.1313	35.3097	18.2308	19.2868	25.7378	24.5303	44.0274	40.3711	41.3789	52.8664	30.1056	28.1995	31.0105	30.9021
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008584DUF866_euk
Blast
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BLAST of TCONS_00015960 vs. Swiss-Prot (Human)
Match: CA123 (UPF0587 protein C1orf123 OS=Homo sapiens GN=C1orf123 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.439e-67
Identity = 97/160 (60.62%), Postives = 127/160 (79.38%), Query Frame = 2 
Query:  107 MVKIGLQVKAQLEFLTDLKPESEDFRWYIKVKCLNCGEESKSFIYLTLLESNPLKGGRGQASMVSKCKLCSRENSIDILKDTISPYTFEDSESFKTIVAFECRGMEPVEFSPRAGWVAKGAETTSSFT-VDLTEGDWCDFDERSGESVGIYEIEHKFQKC 583
            M KI LQ+KA LE +T+L+P  EDFRWY+K+KC NCGE S  + Y+ L++S  LKGGRG ASMV KCKLC+RENSI+IL  TI PY  ED+E+FKTIV FECRG+EPV+F P+AG+ A+G E+ ++F+ ++L E DW D+DE++ ESVGIYE+ H+F KC
Sbjct:    1 MGKIALQLKATLENITNLRPVGEDFRWYLKMKCGNCGEISDKWQYIRLMDSVALKGGRGSASMVQKCKLCARENSIEILSSTIKPYNAEDNENFKTIVEFECRGLEPVDFQPQAGFAAEGVESGTAFSDINLQEKDWTDYDEKAQESVGIYEVTHQFVKC 160
The following BLAST results are available for this feature:
BLAST of TCONS_00015960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CA1238.439e-6760.63UPF0587 protein C1orf123 OS=Homo sapiens GN=C1orf1... [more]
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