TCONS_00015958 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015958
Unique NameTCONS_00015958
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015958 ID=TCONS_00015958|Name=TCONS_00015958|organism=Clytia hemisphaerica|type=transcript|length=364bp
GTCTGAATACACAATTCTCAAGCAACGTTCATGAAGGTGATATTTAATCG
ATGTTCCAATTTCCTATAATGAAACATCCAAACCAATGGGCAATAGCTGA
GTTGGctttttaaaaaagcatttacgatcttaattcttttttcaagGCTC
ATGAAACCAGCAATTCTTGCAAACGCACTGATCTTCTCGCCTGCTTTATT
GCACAATATGGAGATGTGCGTTTCAAAGGTTAAACAATTATCGAAAGTTA
CACCTAATATCTTTGCAGTCTCACAATTTTGTACTATTTCATTTTGTATA
TTTAGGTAAAGGTCTTCACTTGCGATGTTTGCTATTAAAACTGACTTTTG
CGAGAATATCAAAT
Run BLAST on NCBI

transcript from alignment at sc0000222:394229..394592

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015958 ID=TCONS_00015958|Name=TCONS_00015958|organism=Clytia hemisphaerica|type=transcript|length=364bp|location=Sequence derived from alignment at sc0000222:394229..394592 (Clytia hemisphaerica)
ATTTGATATTCTCGCAAAAGTCAGTTTTAATAGCAAACATCGCAAGTGAA
GACCTTTACCTAAATATACAAAATGAAATAGTACAAAATTGTGAGACTGC
AAAGATATTAGGTGTAACTTTCGATAATTGTTTAACCTTTGAAACGCACA
TCTCCATATTGTGCAATAAAGCAGGCGAGAAGATCAGTGCGTTTGCAAGA
ATTGCTGGTTTCATGAGCcttgaaaaaagaattaagatcgtaaatgcttt
tttaaaaagCCAACTCAGCTATTGCCCATTGGTTTGGATGTTTCATTATA
GGAAATTGGAACATCGATTAAATATCACCTTCATGAACGTTGCTTGAGAA
TTGTGTATTCAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008918XLOC_008918Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015958-exon-sc0000222-1491911889:394229..394592TCONS_00015958-exon-sc0000222-1491911889:394229..394592Clytia hemisphaericaexon
TCONS_00015958-exon-sc0000222-1510915933:394229..394592TCONS_00015958-exon-sc0000222-1510915933:394229..394592Clytia hemisphaericaexon
TCONS_00015958-exon-sc0000222-1575043694:394229..394592TCONS_00015958-exon-sc0000222-1575043694:394229..394592Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000222supercontigsc0000222:394229..394592 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.223202	0	0	0.926007	0.731743	1.17709	0	0.57864	0.477826	0.231895	0.914631	0.152227	0	0.129971	0.418435	0.343652	0.176116	0	0.763831	0	0.971493	0.524878	0	0.245748	0.877295	0.627703	0	0.254049	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015958 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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