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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015906 ID=TCONS_00015906|Name=TCONS_00015906|organism=Clytia hemisphaerica|type=transcript|length=2018bp
agagaaaatatagaaaatattaataaaaatgaattcaaaaataCCGACTg
gatttcaaaatgaaattgctGGTGTTGTTGATAAGAAGTTGTTTGAATGT
CCAATCTGTCTTTGTATANTGGAATTGCTGGTGTTGTTGATAAGAAGTTG
TTTGAATGTCCAATCTGTCTCTGTATAATTCGAAAAGCTAAAGAATTGCC
ATGTGAACATCTAATGTGTTCAGAGTGTTTATTGTACTAcgaaaataagg
aaattgaaaaagtcaaaagCAGAGGATTAGATGAAAAAGATGCAGAATTT
CTATGTTCGATATGTCAAAAACGTTACCACCGCAATAAGAAAGTAGCTGT
GAAGTTCATGGACCGGCTGATTCAAAACGATACTCAATTTAAATGTTTGC
AAACGGAATGCAAATGGATTGGCTCATTAAATGACTACAAGGTGCACAAG
CGAAAATGTTTCGAGGAGCTGAACAAAGGAAAGGTCAAGAATCATAACGA
AGAGAATCAAGACCATCACGAGATATTACTTTTAAAGACCGTACAAAATT
TAGTGGAAGAACGCAGAGAAAACCGACAACTCATCCAAAATTTGGAACAA
CATGCCGTTAAAACCGACCAAGAACTAAGTATGCTTAAAACCgaaaataa
agatttagaaTCAAAGGTTGAAAATCACTCAGCTCATCTAAAACTTGAAC
AAATCTTAAATACTATAGAATCTTATCAAGAACTTCAAAAAATGGTCATG
AATGACAGCACAGAGCTGAAAACAAAGGTTAAGAAACAATCAGACTTACT
CACCAAAATGGAACAAAAATTGTGTGATTCAGATGATAAGCAacaacaaa
cattgaaaaacCGAATAACACAATTAGAAAGAGAAAATTCAAACCTAAGG
CAGAATATTGATCGCCAAAAAGCTCGCATAAATCAGTTGGAAAGCCAAAT
GAACAATTATgtgaaaaaatctgaatttgaagaaagtacagaagaatgga
aaaataaGCTGGTGGAAGTCGAGAAAGATGTCATCAACctgaaaattttt
gctgaacAAGCTAGTCAACTCCATACTGGTATATGTAATTGGAACACGAT
GGATTATTGCAGTGGTATAATTTATCAGAAAAGATATGAGAAGATACAAT
CAGTGAAAAGCTGGAgtgaatttgttgaaaaaatttcggCCAGTGATTAT
AATGGGAGTTGTGAATACCTTCAAAATATGGTTAGAGCTATTGCAGATTA
TAGCAACTACACAATTTATCCTGAGACCTATGCAAGTCGACTGGAAGTTC
TggcaaactcgttagaaaaaggtACACATAGAGAAGATTTTCTGAAGATA
AATACTTGTTATGATTTCAATGAGATATCTGTTGTTTTCCTATCTGACGA
AGAAGATACTAACTTCATGAAGAAATTATCATCAGAGGGAGATGATTGGT
ACAGACAATCTCCCATTATGGCAACTCGATATGTTGATGAACGTTTTGAA
ATTGCAGTTGAGTTAGGATTTGATCGAGAACATATCTATCTACTGCATGA
CTATGAAGAAAGTGAGAGCGTCAAAATCCCAGTTAATGGAGAAGCTATTT
CGCTTTATGGACCCAGTTACCAGATCCTAAATTCTACATGTATAATCTTT
GATTTACAAGGAAGAGAAAAACGCATCGGATTATCTTGAGAATGATTCAT
TGATTGGAATCTAACGAGTTCTAGAGTTTTTAATCTGGTTTGATTGGCTT
TCATAGCGAGAGCCTTGGAAGTGGAAATTTTATGAGAAGACTTTCTCAAA
GTCAATGCCTTTGAGACTTAAGGAAAATATATGTATCTTTGTATGAAGGa
agtgaaagttttaaaaagcattgaatCGAAAGATGACGTAACGTATTACA
AAACCGAGGAAGAATATTTGTACGCTACAGTGTGTCTAGAAAAATCAGAA
CCGATTTAATATTAAACTAAGTCTTTTTCCTatcccctgcttattcggac
tcccccgtctattcggcc Run BLAST on NCBI transcript from alignment at sc0000222:337067..344342+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015906 ID=TCONS_00015906|Name=TCONS_00015906|organism=Clytia hemisphaerica|type=transcript|length=7276bp|location=Sequence derived from alignment at sc0000222:337067..344342+ (Clytia hemisphaerica)
agagaaaatatagaaaatattaataaaaatgaattcaaaaataCCGACTg
gatttcaaaatgaaattgctGGTGTTGTTGATAAGAAGTTGTTTGAATGT
CCAATCTGTCTTTGTATANTGGAATTGCTGGTGTTGTTGATAAGAAGTTG
TTTGAATGTCCAATCTGTCTCTGTATAATTCGAAAAGCTAAAGAATTGCC
ATGTGAACATCTAATGTGTTCAGAGTGTTTATTGTACTAcgaaaataagg
aaattgaaaaagtcaaaaggtttgttttttaattcggtAAAGGTTACACA
GGCACTACATATCAGCTCTattcattacacgtttttttagaacaaactat
ataagaacaaaaggcttcgatggccaaaatattaagaacaagctaagaat
attttaagtttttttgcgGACTCAAAAACATCTGATTTCCtataaaaatg
ggcaaaaatactcacagaatggtgaaaataagaatatttttaggcttaaa
atataaagatttaagaatatccaaaggcttcaaaatttttggatgttctt
ataaaaaaacgtgtatcgatactagtcttatttttttttcaagcctGGAC
GGACGCCAAAACTTTCTTTATTGATCTTACATTAGGGCATATGAGTGATG
CAAGTTGAGCTAGTCTAGTTAGTAAGTTCGGcagtgaaattaaaatgaat
tctaaatttttctcttctttgatATTTTAGCAGAGGATTAGATGAAAAAG
ATGCAGAATTTCTATGTTCGATATGTCAAAAACGTTACCACCGCAATAAG
GTATTCATGTCAATTCGTTTTAAGTGTGCACTTATGTTTGCTTTGCTTTT
CGTTTTCCAAACAATACTTCAAATCTAACAAATCATAtactgttgaaaag
ataattcagagcactAAAATTGTCACagaaaagttattctaaaaaaaatg
agaaaatgaagatgaaaaaaatgaagaagaaaaaaatgaaaagaaactcc
tttttggacctaccacggaggtcctttaaattaactgatgttcgttcatt
cgttcgtctgttaccagcttctCTCGgctcatgattttttgcacagtgat
aaaaaagtgacggagcccgattttcgaaaaaacgatgtttggacaaattt
gggccaaaaagtgtaaaattgcttcattagttttttctatttttttgcat
aaagatagagggcaaggttctctaaaaaatgGCTCAAGcagtttttttgg
aaatttttttttggctgtaaaaatcggattttcttatttggggaaattcc
cttttgctatatttagggaaaatgagcatttctcgaagttagcttggtat
ttttttcttatttttttgttggacttttgggaaaatcaccttTTATcgta
gactatgttatagtctaagacgaattactatctaagaaaaaagcccaaag
ccgaagagaattcgcaaacgggtttttttgccgaaaagagttaacagtca
gtagagttgccagtcttagactatacgattttggcacaaaatacaaaaac
agcccAAATCGTACAAATTCGAGTTTCCGTATGCGAGGCCAACTGTGTTC
ggtattcgaaaaaatcaaaacaaaaaaaaagggGCGGGAGAGAAACCGAG
ATAAAAAAGAGAGTGTAGTTCCAAGAAATATTATAGTTCTCTTTGGAGAC
CCTCTCCCTTTTATTCCCTTTATATATTCTTGGAACTACACTCTCTTTTC
TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCAAGAAGTATGTTAAAAGCAGTCTTTTAAA
GTCCACAATTGAAATTAAGTActttgtttgacatttttcaaagttgtcaA
AGAACTGCTAACACCAGATgaaaatactttaatgggataaattttcgcgg
ggattaaatttcgcggttgagctcatccgcgaaattttaagattttgcgg
ggattaattttcgagGATGGCACCATTGGGGggcattattttctcgattt
tgtgacttttactgtcaaatcatgcatattggttgttgaaatacacatta
tttgcgcctctttgatgcaagtaaNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNttttcaaatttccaacgggacttattttcgcggatg
acacccaaatccgcgaaatccgcgaaaattaatccccgcgaaaatttatc
ccattaaagtaactaTTTAAGAGATGAGGGTATTCACATATCTAATGAAA
CACTGCCTGTGATTCATAGGATTCATAAGAAATATACAAACTTACTTACC
TACTTAGTTTCTCTGTGTCTTTTTGCTGTATGTAGACttgttgaaaaatc
attttaaaacagcTTCTACAGAAGCATACTTGAGGAATAAGTACTCCCTT
AAACTAAGTTATCTTGTAGTCTCAATAAAACAAGtgaaccaagaagaaaa
aatccataatgagctggattttcacagaaaaaccATAGATCCATCTTGTC
CTTGTGTCTCTTCCCCAGTGACCAGCGTGTTTTTGATCGTTTGAACCAAG
CTCGGCCTTTAAACTTAGGCGATTTTCACCACGGAGCGACTAACCAGTCt
cacggacgataacatcgtctacttTTATCGTCAATAGGGAAATCAcgtta
aaatatttattcacccCAGTATCTACGACTATAAGTCGTCGATATTAACT
TGTCGTCGATAATAATCTGCTCGCTACACTtttttactctcttgctattt
gtcctatttttatctgattctcgtcatcaggtaggtccattcagcatgtt
gcttgtttggtacataaataaaaacaagcgaCTCAGTTTTTCGTCTCTTC
TGCTTTCTAGAGGTTCTAACCTTTGTTTGATGCAAAAACTTTAAAGGAAA
AATAACTAATCTCGGATACCTAATAAACAGAGGAGTTTGGAATACAATAA
GTGGGGTAGCTGAAAAAATTctcaagcggggggggggggggggNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNtcagacatagtagaaataaagcaaaaagtaatggtggga
acaattttatacaaactaaatcccgtaacaacaatcgtattatcatataa
cgcctatactactgtgtTACAtgtattataaacgactccagtcaaagcat
aatatttttataatgaaaACAGGTGTAATTATCTTCAAAGCGGATGATAT
CCTCTCCGCTAATCTATCTATTACAATTGTCTGCTTTTCTTCATTTGATA
GCTTTTCACTTTTTCAGAAAGTAGCTGTGAAGTTCATGGACCGGCTGATT
CAAAACGATACTCAATTTAAATGTTTGCAAACGGAATGCAAATGGATTGG
CTCATTAAATGACTACAAGGTATTGTAAAGTtatcttaaaggttttgctt
tcacaaaagtgttcccgtttcatatcagacacatatttcatatcaggaca
gggtctgcctattgttaaagtatgctgatataagcaaaaaatgtttttct
tttcctctttctaaccaatcttgcttcacatccgtgtcaatccaaatgcg
aaaaaagcttgtaaattaaaagtgatgagtaagcaaacgatatcactctt
atttaaaaacaaaacttttaatgcCCAGCTCATTAAATAAAGTTTATTTA
AATATCGGAGAAAAAAgggattaaaatttgaaattatttaactTTCAATC
AATTTCTCTTTCAGGTGCACAAGCGAAAATGTTTCGAGGAGGTAGAATGC
CAATATTCTTCTTTCGGTTGCCGGCAAAAAGTATTTAGTgatgttattta
tttttctattacTCCTCTCACTGGTTTACAACTGGTTATTTTTTTCCGTC
GCCAAAAAAAATAGAATCATGTTTGAAAattagtaagtaagtctgcaacc
gcagtctgaggcgacccgaaggctcctctttagataactatctacccgaa
ggtagggggaGGGCatcactctttctccctggattgctccactgaccctt
gatccttctcttaattgctgagcattaagcagagaggcatcaagtaccat
tttgggaatcttcggtatgacccggctgggggttgaacccacaaccttgg
gAACCGAAgtcggatgctctaccactgcactacgatcgcttgaaaattga
aattacaacaaagtaGAACACTGAAGTACATGTTTTTATATAAGTATAGG
GAAAATTTTGTGAGCTTTATTATGCTTGGCACAATgaattttttgagttt
caaaaattcTTATGTACTGGtgcaatttgcaattttttgcaattttagag
attttaaaaGATGCTTTGAAATTCAGTATATGCTTTAGGCAACCTTCAAG
TGTTATGCTTATTAAAAGATGTGTAGAACAAAACTATCTTTGAGGCGAAA
ACTTGTATTCTGTTAATTTTCACTAGCTGAACAAAGGAAAGGTCAAGAAT
CATAACGAAGAGAATCAAGACCATCACGAGATATTACTTTTAAAGACCGT
ACAAAATTTAGTGGAAGAACGCAGAGAAAACCGACAACTCATCCAAAATT
TGGAACAACATGCCGTTAAAACCGACCAAGAACTAAGTATGCTTAAAACC
gaaaataaagatttagaaTCAAAGGTTGAAAATCACTCAGCTCATCTAAA
ACTTGAACAAATCTTAAATACTATAGAATCTTATCAAGAACTTCAAAAAA
TGGTCATGAATGACAGCACAGAGCTGAAAACAAAGGTTAAGAAACAATCA
GACTTACTCACCAAAATGGAACAAAAATTGTGTGATTCAGATGATAAGCA
acaacaaacattgaaaaacCGAATAACACAATTAGAAAGAGAAAATTCAA
ACCTAAGGCAGAATATTGATCGCCAAAAAGCTCGCATAAATCAGTTGGAA
AGCCAAATGAACAATTATgtgaaaaaatctgaatttgaagaaagtacaga
agaatggaaaaataaGCTGGTGGAAGTCGAGAAAGATGTCATCAACctga
aaatttttgctgaacAAGCTAGTCAACTCCATACTGGTATATGTAATTGG
AACACGATGGATTATTGCAGTGGTATAATTTATCAGAAAAGATATGAGAA
GATACAATCAGTGAAAAGCTGGAgtgaatttgttgaaaaaatttcggCCA
GTGATTATAATGGGAGTTGTGAATACCTTCAAAATATGGTTAGAGCTATT
GCAGATTATAGCAACTACACAATTTATCCTGAGACCTATGCAAGTCGACT
GGAAGTTCTggcaaactcgttagaaaaaggtACACATAGAGAAGATTTTC
TGAAGATAAATACTTGTTATGATTTCAATGAGATATCTGTTGTTTTCCTA
TCTGACGAAGAAGATACTAACTTCATGAAGAAATTATCATCAGAGGGAGA
TGATTGGTACAGACAATCTCCCATTATGGCAACTCGATATGTTGATGAAC
GTTTTGAAATTGCAGTTGAGTTAGGATTTGATCGAGAACATATCTATCTA
CTGCATGACTATGAAGAAAGTGAGAGCGTCAAAATCCCAGTTAATGGAGA
AGCTATTTCGCTTTATGGACCCAGTTACCAGATCCTAAATTCTACATGTA
TAATCTTTGATTTACAAGGAAGAGAAAAACGCATCGGATTATCTTGAGAA
TGATTCATTGATTGGAATCTAACGAGTTCTAGAGTTTTTAATCTGGTTTG
ATTGGCTTTCATAGCGAGAGCCTTGGAAGTGGAAATTTTATGAGAAGACT
TTCTCAAAGTCAATGCCTTTGAGACTTAAGGAAAATATATGTATCTTTGT
ATGAAGGaagtgaaagttttaaaaagcattgaatCGAAAGATGACGTAAC
GTATTACAAAACCGAGGAAGAATATTTGTACGCTACAGTGTGTCTAGAAA
AATCAGAACCGATTTAATATTAAACTAAGTCTTTTTCCTatcccctgctt
attcggactcccccgtctattcggcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015906-exon-sc0000222-1491911889:337067..337335 | TCONS_00015906-exon-sc0000222-1491911889:337067..337335 | Clytia hemisphaerica | exon |
| TCONS_00015906-exon-sc0000222-1510915933:337067..337335 | TCONS_00015906-exon-sc0000222-1510915933:337067..337335 | Clytia hemisphaerica | exon |
| TCONS_00015906-exon-sc0000222-1575043694:337067..337335 | TCONS_00015906-exon-sc0000222-1575043694:337067..337335 | Clytia hemisphaerica | exon |
| TCONS_00015906-exon-sc0000222-1491911889:337797..337866 | TCONS_00015906-exon-sc0000222-1491911889:337797..337866 | Clytia hemisphaerica | exon |
| TCONS_00015906-exon-sc0000222-1510915933:337797..337866 | TCONS_00015906-exon-sc0000222-1510915933:337797..337866 | Clytia hemisphaerica | exon |
| TCONS_00015906-exon-sc0000222-1575043694:337797..337866 | TCONS_00015906-exon-sc0000222-1575043694:337797..337866 | Clytia hemisphaerica | exon |
| TCONS_00015906-exon-sc0000222-1491911889:341634..341735 | TCONS_00015906-exon-sc0000222-1491911889:341634..341735 | Clytia hemisphaerica | exon |
| TCONS_00015906-exon-sc0000222-1510915933:341634..341735 | TCONS_00015906-exon-sc0000222-1510915933:341634..341735 | Clytia hemisphaerica | exon |
| TCONS_00015906-exon-sc0000222-1575043694:341634..341735 | TCONS_00015906-exon-sc0000222-1575043694:341634..341735 | Clytia hemisphaerica | exon |
| TCONS_00015906-exon-sc0000222-1491911889:342081..342107 | TCONS_00015906-exon-sc0000222-1491911889:342081..342107 | Clytia hemisphaerica | exon |
| TCONS_00015906-exon-sc0000222-1510915933:342081..342107 | TCONS_00015906-exon-sc0000222-1510915933:342081..342107 | Clytia hemisphaerica | exon |
| TCONS_00015906-exon-sc0000222-1575043694:342081..342107 | TCONS_00015906-exon-sc0000222-1575043694:342081..342107 | Clytia hemisphaerica | exon |
| TCONS_00015906-exon-sc0000222-1491911889:342793..344342 | TCONS_00015906-exon-sc0000222-1491911889:342793..344342 | Clytia hemisphaerica | exon |
| TCONS_00015906-exon-sc0000222-1510915933:342793..344342 | TCONS_00015906-exon-sc0000222-1510915933:342793..344342 | Clytia hemisphaerica | exon |
| TCONS_00015906-exon-sc0000222-1575043694:342793..344342 | TCONS_00015906-exon-sc0000222-1575043694:342793..344342 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000222 | supercontig | sc0000222:337067..344342 + |
Blast
The following BLAST results are available for this feature:
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