TCONS_00015902 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015902
Unique NameTCONS_00015902
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length627

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015902 ID=TCONS_00015902|Name=TCONS_00015902|organism=Clytia hemisphaerica|type=transcript|length=627bp
GATAATCAGTTATAATAAAGATTGTAAGATTGTAACATGCAAAGTGGACT
ATTGGACATACCTTAAAACGACAGACAACTCTCCCTCTTTGACGGTGTAG
TTAGGATAACTTCCCTCTAAAATTTTACGTCGAATGCGTGGCTCTTCTAC
ATAACGTGGAGGTACGCCGTAATCGAACGCGTTGTCGATCAGGAACTTGC
AATACATGTCTGCTGACACACGGTGGCCTGCACTTTCGTCAATCATAGGC
GCGTTTGCAGTTTTTTGACGGAATCTCTCCATTAATTCTTCAGCGTATTC
ACGGCGTTCATCTAACGTCATTGCGGACGCTTCGTAACGGCGGTGTTTTG
CTACCGAAACAATTGTCCGGTTCCCGATGAATGGGCCGGTTTGATTTTCG
CGCTCAACCTTCTTCCGTTCGTGCTGCCGCCTGAGGTTCGCGTCGAACCT
CTTACTCAAGTTATAAAAAGCACTTTTATGTTCTCTTGGTTGGATGTGAA
CAGAGGATTTGGCGACAGAAGCATTCACTTGAGCCACGATTTTTCCGACT
CTGTCGTATGGTGTTGGATGGACGGAGTATTTGATTGGAAGTTGCGGCAA
AACTTCTTTTCGTTTGCTCTCTTGATc
Run BLAST on NCBI

transcript from alignment at sc0000222:255394..256092+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015902 ID=TCONS_00015902|Name=TCONS_00015902|organism=Clytia hemisphaerica|type=transcript|length=699bp|location=Sequence derived from alignment at sc0000222:255394..256092+ (Clytia hemisphaerica)
GATAATCAGTTATAATAAAGATTGTAAGATTGTAACATGCAAAGTGGACT
ATTGGACATACCTTAAAACGACAGACAACTCTCCCTCTTTGACGGTGTAG
TTAGGATAACTTCCCTCTAAAATTTTACGTCGAATGCGTGGCTCTTCTAC
ATAACGTGGAGATACGCCANAGTTAGGATAACTTCCCTCTAAAATTTTAC
GCCGAATGCGTGGCTCTTCTACATAACGTGGAGGTACGCCGTAATCGAAC
GCGTTGTCGATCAGGAACTTGCAATACATGTCTGCTGACACACGGTGGCC
TGCACTTTCGTCAATCATAGGCGCGTTTGCAGTTTTTTGACGGAATCTCT
CCATTAATTCTTCAGCGTATTCACGGCGTTCATCTAACGTCATTGCGGAC
GCTTCGTAACGGCGGTGTTTTGCTACCGAAACAATTGTCCGGTTCCCGAT
GAATGGGCCGGTTTGATTTTCGCGCTCAACCTTCTTCCGTTCGTGCTGCC
GCCTGAGGTTCGCGTCGAACCTCTTACTCAAGTTATAAAAAGCACTTTTA
TGTTCTCTTGGTTGGATGTGAACAGAGGATTTGGCGACAGAAGCATTCAC
TTGAGCCACGATTTTTCCGACTCTGTCGTATGGTGTTGGATGGACGGAGT
ATTTGATTGGAAGTTGCGGCAAAACTTCTTTTCGTTTGCTCTCTTGATc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008883XLOC_008883Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015902-exon-sc0000222-1491911889:255394..255543TCONS_00015902-exon-sc0000222-1491911889:255394..255543Clytia hemisphaericaexon
TCONS_00015902-exon-sc0000222-1510915933:255394..255543TCONS_00015902-exon-sc0000222-1510915933:255394..255543Clytia hemisphaericaexon
TCONS_00015902-exon-sc0000222-1575043694:255394..255543TCONS_00015902-exon-sc0000222-1575043694:255394..255543Clytia hemisphaericaexon
TCONS_00015902-exon-sc0000222-1491911889:255616..256092TCONS_00015902-exon-sc0000222-1491911889:255616..256092Clytia hemisphaericaexon
TCONS_00015902-exon-sc0000222-1510915933:255616..256092TCONS_00015902-exon-sc0000222-1510915933:255616..256092Clytia hemisphaericaexon
TCONS_00015902-exon-sc0000222-1575043694:255616..256092TCONS_00015902-exon-sc0000222-1575043694:255616..256092Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000222supercontigsc0000222:255394..256092 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0739073	0.185992	0.0102547	0	0	0	0	0	0.00421857	0	0	0	0	0	0.0119131	0	0	0	0	0	0	0	0	0	0	0.0756159	0.0287676	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015902 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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