TCONS_00015900 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00015900
Unique Name	TCONS_00015900
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3105

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000222:239480..242648+

transcript sequence

>TCONS_00015900 ID=TCONS_00015900|Name=TCONS_00015900|organism=Clytia hemisphaerica|type=transcript|length=3105bp
CGCACGCTCACATTGacttgacattttgaaagtaaacatttcactgattg
acaaaaaaaagttgatgaccaaacaatattttctttaaaaatagcAAAAG
CCTGAAAGCTAATGGTTATATCTTTTTATCTCAATTACTCAAAGGATTCA
GCTTTGAATGAATTCATTGTGATACCATCGTTCTACTGAGgaaatttata
aacaaaacctACTCATTTCAGATGTTGATTATATTGTGGATATTGTGAAA
ACTTGAAAGCTTGCTAGACAGTACAGAAATCAAAGTGCTACCGTTCAGTT
GGTTCTCAGTTCATAACAAAAAGAGGCAGAAATTGTATGATGTAGATTCA
TCAGGCAAGAATAAATCAAGGACATATCAAACTCCTTCCACCTCAAAAAT
GGCTGCTGAAAATATGACAATTGAAGAAAAGATGTCTTGGCAAAATGAGA
TGTTGAAGCGACTGCAAAACACAGCTGCTCCAGTTCCCATAAAGGTAGCC
TGTACGATAACACCACCTGGTAAACCAGATTATTTAGGCGAGGAATATCA
TGGAACCATCACaaaagaagaagagaaaaagattttggagGGAAAGAATG
GACGTTATATTGTTCGTGACAGCTCTTCTTCAAAGCCGCATGAATATACC
CTTGCATTTAATTTTGATGAGAGTTTTCAGTACGTCAAATTGGTTTACAA
TCCAGGGACAAAAGAGTTTAGGACAGATTCAAATGCTAGTAAAAATGGTT
TTAAATCAATCCTTGCTTTGATTACAGATGTAGTAAATTTGTACCAAAAA
CTAAAGATATCTTCAGGTGGAGGAGGTAGTGTTAAAAGTAGTAAATCCTC
AAGCGTAAGCAAATCGCATAAGTTCAAAACATACTCTTATAAACACCCTA
AATGGTGTGATATTTGTGGAAACTTTTTATGGGGCTTAGTAAATCAAGGA
GAAAAATGCAAAGATTGTGGTATAAACTGTCACAAATCTTGTCGGGCAGA
AGCTCCAATGCCTTGTTCTCCAATCAATAATAATTATAAAAGAGGAACTA
CtcagaaagaaaagaagagcTCAAATCCAGAGAAGGATGATGACCCAAAT
TACATAGTAATATCACCGAGAAATCCAGTTTTTGATATGTGTGATTATTT
TAAGAAATGCTCCAGATTCATTTCTGCATTCAATGTAAGGGACAGTTTCA
TTGATATGAGAAGCAATATGACAAGATGTTTTTGTGATGAATGTATTGCT
CAGACTTCTCACTCAGACCAAAGTAATGTAGGGATTAAACATTTAGAACA
ATGGACACGCTTCCAATTTGAATGGCAAGAGGATAAGCTAAAGCGTAATT
TGGAAGACTGGGAAGTAGTCTATTTTGCAGTTAACCCTAAATATGTGAGA
GATCTAATAAAAGGTATATTTAACCCTCCAGATTTTGAAGAAATCGATGA
GTTTCATGTTGCACCATCTTTGGCTTATACTACCCAGGACATGGAAAATG
AGAATTGGTCATATCAATTTGCTGATACCACAACAGGAGGTCAACTTTAC
GCTCAAACTGTATTAGAGGCTTACTTGAGACCTGAAAGCTATGAGGTAAT
TCCAAGTGATAGTGAAATTGATGGAAGTTCACCGTCAAATGGTGATATTG
ATGAACCTCAAATGGTTCCTGTACACTGGAAAGCCAAATACAAGAAAGAT
CTTTATCCTAAATCAATCCTGGTTAAAATCtttgagaaataattatttca
gtctttgaaaacttttatatttttttNTTTTAAATCAATCCTTGCTTTGA
TTACAGATGTAGTAAATTTGTACCAAAAACTAAAGATATCTTCAGGTGGA
GGAGGtagtgttaaaagtaataaatcCTCAAGCGTAAGCAAATCGCATAA
GTTCAAAACATACTCTTATAAACACCCTAAATGGTGTGATATTTGTGGAA
ACTTTTTATGGGGCTTAGTAAATCAAGGAGAAAAATGCAAAGATTGTGGT
ATAAACTGTCACAAATCTTGTCGGGCAGAAGCTCCAATGCCTTGTTCTCC
AATCAATAATAATTATAAAAGAGGAACTACtcagaaagaaaagaagagcT
CAAATCCAGAGAAGGATGATGACCCAAATTACATAGTAATATCACCGAGA
AATCCAGTTTTTGATATGTGTGATTATTTTAAGAAATGCTCCAGATTCAT
TTCTGCATTCAATGTAAGGGACAGTTTCATTGATATGAGAAGCAATATGA
CAAGATGTTTTTGTGATGAATGTATTGCTCAGACTTCTCACTCAGACCAA
AGTAATGTAGGGATTAAACATTTAGAACAATGGACACGCTTCCAATTTGA
ATGGCAAGAGGATAAGCTAAAGCGTAATTTGGAAGACTGGGAAGTAGTCT
ATTTTGCAGTTAACCCTAAATATGTGAGAGATCTAATAAAAGGTATATTT
AACCCTCCAGATTTTGAAGAAATCGATGAGTTTCATGTTGCACCATCTCT
GGCTTATACTACCCAGGACATGGAAAATGAGAATTGGTCATATCAATTTG
CTGATACCACAACAGGAGGTCAACTTTACGCTCAAACTGTATTAGAGGCT
TACTTGAGACCTGAAAGCTATGAGGTAATTCCAAGTGATAGTGAAATTGA
TGGAAGTTCACCGTCAAATGGTGATATTGATGAACCTCAAATGGTTCCTG
TACACTGGAAAGCCAAATACAAGAAAGATCTTTATCCTAAATCAATCCTG
GTTAAAATCTttgagaaataatttttttcagtctttgaaaacttttatac
ttttttcacttaattttcttaaacatgattttgattgaattttgaatata
cttatttttatattgatcattttttaatattatttcaTACTTAATTCAAT
TTTGCCTATTTGGCTGCTAATATATATGGGTGTATTTTGGCTGAATTTGG
TCTGGATATTTAAAAATCACATGTTTTATATTTCACGTCAAActttggaa
aattctttttgtccACCAACCCTTGTTGTTCTGTTCTTtgcaagattttt
ttattttaaaatatttattgataCTTACACTAATCTAGTAAATATTGGTC
TGTTG

Run BLAST on NCBI

transcript from alignment at sc0000222:239480..242648+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00015900 ID=TCONS_00015900|Name=TCONS_00015900|organism=Clytia hemisphaerica|type=transcript|length=3169bp|location=Sequence derived from alignment at sc0000222:239480..242648+ (Clytia hemisphaerica)
CGCACGCTCACATTGacttgacattttgaaagtaaacatttcactgattg
acaaaaaaaagttgatgaccaaacaatattttctttaaaaatagcAAAAG
CCTGAAAGCTAATGGTTATATCTTTTTATCTCAATTACTCAAAGGATTCA
GCTTTGAATGAATTCATTGTGATACCATCGTTCTACTGAGgaaatttata
aacaaaacctACTCATTTCAGATGTTGATTATATTGTGGATATTGTGAAA
ACTTGAAAGCTTGCTAGACAGTACAGAAATCAAAGTGCTACCGTTCAGTT
GGTTCTCAGTTCATAACAAAAAGAGGCAGAAATTGTATGATGTAGATTCA
TCAGGCAAGAATAAATCAAGGACATATCAAACTCCTTCCACCTCAAAAAT
GGCTGCTGAAAATATGACAATTGAAGAAAAGATGTCTTGGCAAAATGAGA
TGTTGAAGCGACTGCAAAACACAGCTGCTCCAGTTCCCATAAAGGTAGCC
TGTACGATAACACCACCTGGTAAACCAGATTATTTAGGCGAGGAATATCA
TGGAACCATCACaaaagaagaagagaaaaagattttggagGGAAAGAATG
GACGTTATATTGTTCGTGACAGCTCTTCTTCAAAGCCGCATGAATATACC
CTTGCATTTAATTTTGATGAGAGTTTTCAGTACGTCAAATTGGTTTACAA
TCCAGGGACAAAAGAGTTTAGGACAGATTCAAATGCTAGTAAAAATGGTT
TTAAATCAATCCTTGCTTTGATTACAGATGTAGTAAATTTGTACCAAAAA
CTAAAGATATCTTCAGGTGGAGGAGGTAGTGTTAAAAGTAGTAAATCCTC
AAGCGTAAGCAAATCGCATAAGTTCAAAACATACTCTTATAAACACCCTA
AATGGTGTGATATTTGTGGAAACTTTTTATGGGGCTTAGTAAATCAAGGA
GAAAAATGCAAAGATTGTGGTATAAACTGTCACAAATCTTGTCGGGCAGA
AGCTCCAATGCCTTGTTCTCCAATCAATAATAATTATAAAAGAGGAACTA
CtcagaaagaaaagaagagcTCAAATCCAGAGAAGGATGATGACCCAAAT
TACATAGTAATATCACCGAGAAATCCAGTTTTTGATATGTGTGATTATTT
TAAGAAATGCTCCAGATTCATTTCTGCATTCAATGTAAGGGACAGTTTCA
TTGATATGAGAAGCAATATGACAAGATGTTTTTGTGATGAATGTATTGCT
CAGACTTCTCACTCAGACCAAAGTAATGTAGGGATTAAACATTTAGAACA
ATGGACACGCTTCCAATTTGAATGGCAAGAGGATAAGCTAAAGCGTAATT
TGGAAGACTGGGAAGTAGTCTATTTTGCAGTTAACCCTAAATATGTGAGA
GATCTAATAAAAGGTATATTTAACCCTCCAGATTTTGAAGAAATCGATGA
GTTTCATGTTGCACCATCTTTGGCTTATACTACCCAGGACATGGAAAATG
AGAATTGGTCATATCAATTTGCTGATACCACAACAGGAGGCCAACTANCA
GGACATGGAAAATGAGAATTGGTCATATCAATTTGCTGATACCACAACAG
GAGGTCAACTTTACGCTCAAACTGTATTAGAGGCTTACTTGAGACCTGAA
AGCTATGAGGTAATTCCAAGTGATAGTGAAATTGATGGAAGTTCACCGTC
AAATGGTGATATTGATGAACCTCAAATGGTTCCTGTACACTGGAAAGCCA
AATACAAGAAAGATCTTTATCCTAAATCAATCCTGGTTAAAATCtttgag
aaataattatttcagtctttgaaaacttttatatttttttNTTTTAAATC
AATCCTTGCTTTGATTACAGATGTAGTAAATTTGTACCAAAAACTAAAGA
TATCTTCAGGTGGAGGAGGtagtgttaaaagtaataaatcCTCAAGCGTA
AGCAAATCGCATAAGTTCAAAACATACTCTTATAAACACCCTAAATGGTG
TGATATTTGTGGAAACTTTTTATGGGGCTTAGTAAATCAAGGAGAAAAAT
GCAAAGATTGTGGTATAAACTGTCACAAATCTTGTCGGGCAGAAGCTCCA
ATGCCTTGTTCTCCAATCAATAATAATTATAAAAGAGGAACTACtcagaa
agaaaagaagagcTCAAATCCAGAGAAGGATGATGACCCAAATTACATAG
TAATATCACCGAGAAATCCAGTTTTTGATATGTGTGATTATTTTAAGAAA
TGCTCCAGATTCATTTCTGCATTCAATGTAAGGGACAGTTTCATTGATAT
GAGAAGCAATATGACAAGATGTTTTTGTGATGAATGTATTGCTCAGACTT
CTCACTCAGACCAAAGTAATGTAGGGATTAAACATTTAGAACAATGGACA
CGCTTCCAATTTGAATGGCAAGAGGATAAGCTAAAGCGTAATTTGGAAGA
CTGGGAAGTAGTCTATTTTGCAGTTAACCCTAAATATGTGAGAGATCTAA
TAAAAGGTATATTTAACCCTCCAGATTTTGAAGAAATCGATGAGTTTCAT
GTTGCACCATCTCTGGCTTATACTACCCAGGACATGGAAAATGAGAATTG
GTCATATCAATTTGCTGATACCACAACAGGAGGTCAACTTTACGCTCAAA
CTGTATTAGAGGCTTACTTGAGACCTGAAAGCTATGAGGTAATTCCAAGT
GATAGTGAAATTGATGGAAGTTCACCGTCAAATGGTGATATTGATGAACC
TCAAATGGTTCCTGTACACTGGAAAGCCAAATACAAGAAAGATCTTTATC
CTAAATCAATCCTGGTTAAAATCTttgagaaataatttttttcagtcttt
gaaaacttttatacttttttcacttaattttcttaaacatgattttgatt
gaattttgaatatacttatttttatattgatcattttttaatattatttc
aTACTTAATTCAATTTTGCCTATTTGGCTGCTAATATATATGGGTGTATT
TTGGCTGAATTTGGTCTGGATATTTAAAAATCACATGTTTTATATTTCAC
GTCAAActttggaaaattctttttgtccACCAACCCTTGTTGTTCTGTTC
TTtgcaagatttttttattttaaaatatttattgataCTTACACTAATCT
AGTAAATATTGGTCTGTTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008882	XLOC_008882	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00015900-exon-sc0000222-1491911889:239480..240969	TCONS_00015900-exon-sc0000222-1491911889:239480..240969	Clytia hemisphaerica	exon
TCONS_00015900-exon-sc0000222-1510915933:239480..240969	TCONS_00015900-exon-sc0000222-1510915933:239480..240969	Clytia hemisphaerica	exon
TCONS_00015900-exon-sc0000222-1575043694:239480..240969	TCONS_00015900-exon-sc0000222-1575043694:239480..240969	Clytia hemisphaerica	exon
TCONS_00015900-exon-sc0000222-1491911889:241034..242648	TCONS_00015900-exon-sc0000222-1491911889:241034..242648	Clytia hemisphaerica	exon
TCONS_00015900-exon-sc0000222-1510915933:241034..242648	TCONS_00015900-exon-sc0000222-1510915933:241034..242648	Clytia hemisphaerica	exon
TCONS_00015900-exon-sc0000222-1575043694:241034..242648	TCONS_00015900-exon-sc0000222-1575043694:241034..242648	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000222	supercontig	sc0000222:239480..242648 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.32789	0.255796	0.0742509	0.0726429	0.751704	0.524123	0.337244	0.631447	0.276307	0.308026	0.0996591	0.196536	0.566981	0.407641	0.223424	0.27973	0.147688	0.227063	0.453121	0.364737	0.507237	0.510288	0.413548	0.649412	0.739287	0.471283	0.719365	0.959657	0.837045	1.11237

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00015900 vs. Swiss-Prot (Human)

BLAST of TCONS_00015900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00015900 (transcript) - C. hemisphaerica