TCONS_00015881 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015881
Unique NameTCONS_00015881
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015881 ID=TCONS_00015881|Name=TCONS_00015881|organism=Clytia hemisphaerica|type=transcript|length=424bp
CAGATGACGAAAAAGTACCAAAGTTAAACCTGACTAGCAATATTATCTTA
GATTTTAATTCATTCTTGGGAACCTTTGCTTAAATACTTGCAAGAATAAA
ATGCCTGAAAAACAAGCACCCTTTGTATAAAAGTGATTAGATACATGCAC
AATTGACACTCAATCACAATGGATAATTtgaattgaaaacatttttccta
GCACCCAACTGAGCATTTATGCAAAAAATGGGTTGTCTTTTCCTCATCAG
TGGTTTTAGCTGTAGTTATTGTGGTTTAAATCTTTGGTTTACGTCTGTAT
AATATTGAATATATTGTGAACAATAATTTGTATTTTAAGAGAAACTACCA
ACAACACCAAACACAACCTCAGCCAACCAACTCTAAATATTCCACAATTT
TTGTTGATGTGAGAAGCATGTTCA
Run BLAST on NCBI

transcript from alignment at sc0000217:240171..240594

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015881 ID=TCONS_00015881|Name=TCONS_00015881|organism=Clytia hemisphaerica|type=transcript|length=424bp|location=Sequence derived from alignment at sc0000217:240171..240594 (Clytia hemisphaerica)
TGAACATGCTTCTCACATCAACAAAAATTGTGGAATATTTAGAGTTGGTT
GGCTGAGGTTGTGTTTGGTGTTGTTGGTAGTTTCTCTTAAAATACAAATT
ATTGTTCACAATATATTCAATATTATACAGACGTAAACCAAAGATTTAAA
CCACAATAACTACAGCTAAAACCACTGATGAGGAAAAGACAACCCATTTT
TTGCATAAATGCTCAGTTGGGTGCtaggaaaaatgttttcaattcaAATT
ATCCATTGTGATTGAGTGTCAATTGTGCATGTATCTAATCACTTTTATAC
AAAGGGTGCTTGTTTTTCAGGCATTTTATTCTTGCAAGTATTTAAGCAAA
GGTTCCCAAGAATGAATTAAAATCTAAGATAATATTGCTAGTCAGGTTTA
ACTTTGGTACTTTTTCGTCATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008871XLOC_008871Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015881-exon-sc0000217-1491911889:240171..240594TCONS_00015881-exon-sc0000217-1491911889:240171..240594Clytia hemisphaericaexon
TCONS_00015881-exon-sc0000217-1510915933:240171..240594TCONS_00015881-exon-sc0000217-1510915933:240171..240594Clytia hemisphaericaexon
TCONS_00015881-exon-sc0000217-1575043694:240171..240594TCONS_00015881-exon-sc0000217-1575043694:240171..240594Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000217supercontigsc0000217:240171..240594 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.165013	0.160913	0.747344	0.18279	0.222529	0.175845	0.4243	0.198612	0.556212	0	0.50154	0.879181	0.438979	0.341913	0.936997	0.201108	0	0	0.175412	0.367112	0.797718	0.933838	0.378401	0.344021	0.354334	2.05552	0	0.241476	0	0.186602
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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