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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015880 ID=TCONS_00015880|Name=TCONS_00015880|organism=Clytia hemisphaerica|type=transcript|length=1251bp
CTTTATTGTGACGTCATGTGCTATTATTTTGACAACGTCAGCATAAATGA
TGAAGTGCCGTTTTGTTtagtttttgtctttattgtttcaaCATTCTTTC
TCTTTTGGATGGTGGATATAATATAAATTGAATTATGTAAACGCTGCGTT
GTATATTATCATTTCATTGAAAGTTGAAGTAAAGGATAGACCGAacataa
aaattgtaaaaagttaaaaattcgAACAGAAGTTTGTTGTGAAGAAATTC
GTACAtttgtaaaagattttgaaagagaaattcaaaccaaaatcGGGTAT
ACGTTCAACGCTAACCAGGAGAGGATTGTACACAGATTTGAACGagaaat
aacattttaattAATACAATATGGGATTTTTATTCAAGAAGAGTGATAAA
AGTAAGAAACGGGAACAACAGGCCGCAGAACAAAGAGCTGCCAGCGGAGA
CGAATCATCAAGCGACGCCGAACAGGGCGCAACCGCCAGCGGTGAAACAA
CCACCGCCACCACTTCACCCAAAGTGAAAAAGAGACAATCAGTTAGACGt
aatttatcttcaaattcgATGAGAAAGATAAGAGAGTTGGCAGCTTGTCT
ACAAATTATGGGAGATGAAATGGAAACGAAAAGATTAAGTGGGGCGTATT
CGATTGCTGATCCAACCGCCCTTGAAACGTCAAAAGGAAAATCAAGTCAA
GTATAAAGAAAGCGTTGAGTCCCGTTTGAGTGAAGGCGTTAACACAGGCG
ATAGAGGCGATGTTTAAGAGATCTCTTGAGAGATAAACCACGAAATGAAC
ATCCATACAAAACACTAGAAAAGAAACCATTTTGAGACAAAAGAGATTCG
AGCACACAATAAAGTTGTAACTGAAAACAATCGACAAGGATTTTGAAAGG
CTGCAAAAATATTGACGGCGAAATTATGAAGATGAGAAGTTATACTGAAG
TCGAAGTATGAACGAGAAAGATAAGTCACGTGACTTGAACTACCAAGAAT
ATTAATGAAGTacaagagtacaatatatcaaAAACAATAGATAGGAAACG
AATTGCATAAGGCGAGGAAACGACTAATTTGTAATTACATACTTTCGATG
AAAAGATGTTATAGTTAGAAAGTAATAACACATTAAGTAACATACTTTGA
TGTTTGAAATAGAAATGAATCGGATACACTATTTATACACTGTGAAGTTA
AAACTAAAATATAAACCGaacattttaagatattttagtcagatattttt
t Run BLAST on NCBI protein sequence of TCONS_00015880-protein >TCONS_00015880-protein ID=TCONS_00015880-protein|Name=TCONS_00015880-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MGFLFKKSDKSKKREQQAAEQRAASGDESSSDAEQGATASGETTTATTSP
KVKKRQSVRRNLSSNSMRKIRELAACLQIMGDEMETKRLSGAYSIADPTA
LETSKGKSSQV Run BLAST on NCBI transcript from alignment at sc0000217:150756..152006 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015880 ID=TCONS_00015880|Name=TCONS_00015880|organism=Clytia hemisphaerica|type=transcript|length=1251bp|location=Sequence derived from alignment at sc0000217:150756..152006 (Clytia hemisphaerica)
aaaaaatatctgactaaaatatcttaaaatgttCGGTTTATATTTTAGTT
TTAACTTCACAGTGTATAAATAGTGTATCCGATTCATTTCTATTTCAAAC
ATCAAAGTATGTTACTTAATGTGTTATTACTTTCTAACTATAACATCTTT
TCATCGAAAGTATGTAATTACAAATTAGTCGTTTCCTCGCCTTATGCAAT
TCGTTTCCTATCTATTGTTTttgatatattgtactcttgtACTTCATTAA
TATTCTTGGTAGTTCAAGTCACGTGACTTATCTTTCTCGTTCATACTTCG
ACTTCAGTATAACTTCTCATCTTCATAATTTCGCCGTCAATATTTTTGCA
GCCTTTCAAAATCCTTGTCGATTGTTTTCAGTTACAACTTTATTGTGTGC
TCGAATCTCTTTTGTCTCAAAATGGTTTCTTTTCTAGTGTTTTGTATGGA
TGTTCATTTCGTGGTTTATCTCTCAAGAGATCTCTTAAACATCGCCTCTA
TCGCCTGTGTTAACGCCTTCACTCAAACGGGACTCAACGCTTTCTTTATA
CTTGACTTGATTTTCCTTTTGACGTTTCAAGGGCGGTTGGATCAGCAATC
GAATACGCCCCACTTAATCTTTTCGTTTCCATTTCATCTCCCATAATTTG
TAGACAAGCTGCCAACTCTCTTATCTTTCTCATcgaatttgaagataaat
taCGTCTAACTGATTGTCTCTTTTTCACTTTGGGTGAAGTGGTGGCGGTG
GTTGTTTCACCGCTGGCGGTTGCGCCCTGTTCGGCGTCGCTTGATGATTC
GTCTCCGCTGGCAGCTCTTTGTTCTGCGGCCTGTTGTTCCCGTTTCTTAC
TTTTATCACTCTTCTTGAATAAAAATCCCATATTGTATTaattaaaatgt
tatttctCGTTCAAATCTGTGTACAATCCTCTCCTGGTTAGCGTTGAACG
TATACCCgattttggtttgaatttctctttcaaaatcttttacaaaTGTA
CGAATTTCTTCACAACAAACTTCTGTTcgaatttttaactttttacaatt
tttatgtTCGGTCTATCCTTTACTTCAACTTTCAATGAAATGATAATATA
CAACGCAGCGTTTACATAATTCAATTTATATTATATCCACCATCCAAAAG
AGAAAGAATGttgaaacaataaagacaaaaactaAACAAAACGGCACTTC
ATCATTTATGCTGACGTTGTCAAAATAATAGCACATGACGTCACAATAAA
G Coding sequence (CDS) from alignment at sc0000217:150756..152006 >TCONS_00015880 ID=TCONS_00015880|Name=TCONS_00015880|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000217:150756..152006 (Clytia hemisphaerica)
TTATACTTGACTTGATTTTCCTTTTGACGTTTCAAGGGCGGTTGGATCAG
CAATCGAATACGCCCCACTTAATCTTTTCGTTTCCATTTCATCTCCCATA
ATTTGTAGACAAGCTGCCAACTCTCTTATCTTTCTCATcgaatttgaaga
taaattaCGTCTAACTGATTGTCTCTTTTTCACTTTGGGTGAAGTGGTGG
CGGTGGTTGTTTCACCGCTGGCGGTTGCGCCCTGTTCGGCGTCGCTTGAT
GATTCGTCTCCGCTGGCAGCTCTTTGTTCTGCGGCCTGTTGTTCCCGTTT
CTTACTTTTATCACTCTTCTTGAATAAAAATCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015880-exon-sc0000217-1491911889:150756..152006 | TCONS_00015880-exon-sc0000217-1491911889:150756..152006 | Clytia hemisphaerica | exon |
| TCONS_00015880-exon-sc0000217-1510915933:150756..152006 | TCONS_00015880-exon-sc0000217-1510915933:150756..152006 | Clytia hemisphaerica | exon |
| TCONS_00015880-exon-sc0000217-1575043694:150756..152006 | TCONS_00015880-exon-sc0000217-1575043694:150756..152006 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000217 | supercontig | sc0000217:150756..152006 . |
Blast
The following BLAST results are available for this feature:
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