TCONS_00015879 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015879
Unique NameTCONS_00015879
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length480

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015879 ID=TCONS_00015879|Name=TCONS_00015879|organism=Clytia hemisphaerica|type=transcript|length=480bp
CGGCATGATTTCAGAATTTTGGCCAGAGTcccagaaaaataaaaaaatgg
gcaaaacttcaatccacgcgaaaattttagaTCTTCCATTCGGGATAAAA
AGTCCCAACGAAAAAATATATACGACAACCTGATCAAATTGTGATCTGTC
GAGAGAACATTCTGGATAGACTTTTGTGTTCATTTTGGAATAACAGCAGT
TGAATTACTGACTATctttaagtttttaaaatgattCATTTAATGATTAC
AATGTACCTGTTGTTTTATGCAACGTTTTGATTACGAATTCTAAGAAAAA
ATTGCAAACTGAAGCAATCTTAGACTCCCCCCTCTGTTGAAATGATATTG
TTGTTTTTATAAGTCACACTCCTACACTAAAGTCAATATAAGAACATAGT
AATTCCCACATTAAAGGGACacaacagtacttgcgaaatttgtaaacaaa
ctgtatgcagcatacaaaatcaaaacaaat
Run BLAST on NCBI

transcript from alignment at sc0000217:144904..145383

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015879 ID=TCONS_00015879|Name=TCONS_00015879|organism=Clytia hemisphaerica|type=transcript|length=480bp|location=Sequence derived from alignment at sc0000217:144904..145383 (Clytia hemisphaerica)
atttgttttgattttgtatgctgcatacagtttgtttacaaatttcgcaa
gtactgttgtGTCCCTTTAATGTGGGAATTACTATGTTCTTATATTGACT
TTAGTGTAGGAGTGTGACTTATAAAAACAACAATATCATTTCAACAGAGG
GGGGAGTCTAAGATTGCTTCAGTTTGCAATTTTTTCTTAGAATTCGTAAT
CAAAACGTTGCATAAAACAACAGGTACATTGTAATCATTAAATGaatcat
tttaaaaacttaaagATAGTCAGTAATTCAACTGCTGTTATTCCAAAATG
AACACAAAAGTCTATCCAGAATGTTCTCTCGACAGATCACAATTTGATCA
GGTTGTCGTATATATTTTTTCGTTGGGACTTTTTATCCCGAATGGAAGAt
ctaaaattttcgcgtggattgaagttttgcccatttttttatttttctgg
gACTCTGGCCAAAATTCTGAAATCATGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008869XLOC_008869Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015879-exon-sc0000217-1491911889:144904..145383TCONS_00015879-exon-sc0000217-1491911889:144904..145383Clytia hemisphaericaexon
TCONS_00015879-exon-sc0000217-1510915933:144904..145383TCONS_00015879-exon-sc0000217-1510915933:144904..145383Clytia hemisphaericaexon
TCONS_00015879-exon-sc0000217-1575043694:144904..145383TCONS_00015879-exon-sc0000217-1575043694:144904..145383Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000217supercontigsc0000217:144904..145383 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.673582	0.383226	0.444839	1.88652	0.176545	0.279107	0.700645	0.630507	0.773236	0.410405	0.132693	0.0873388	0.261837	0.904664	0.892732	0.319334	0	0.503914	0.278569	0.145831	1.14229	0.742358	0.751245	0.409616	0	0.257927	1.0795	1.53544	0.726918	0.742354
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015879 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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