TCONS_00015878 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015878
Unique NameTCONS_00015878
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length245

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015878 ID=TCONS_00015878|Name=TCONS_00015878|organism=Clytia hemisphaerica|type=transcript|length=245bp
ACATGTGGAAAGCCCTCAAAGCTCTTATCGAAAATGCCATGCTATCCGTC
CCTTCAAAATACACATCAAGTCGTTATTCTCAACCTTGGATGACACAGAA
ATGTAAAAGGTTATCTCGGCGAAAGAAGAGGGCCTACAAGCGCgccaaaa
attcatcaaaaccTGCAGACTGGGATCGCTTCAAAAAGCTAACAAACGAA
TGCAGGAAAGCTTGCAAATCAGCATTCAATAACTTTGTCAAAAAC
Run BLAST on NCBI

transcript from alignment at sc0000217:131246..131490

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015878 ID=TCONS_00015878|Name=TCONS_00015878|organism=Clytia hemisphaerica|type=transcript|length=245bp|location=Sequence derived from alignment at sc0000217:131246..131490 (Clytia hemisphaerica)
GTTTTTGACAAAGTTATTGAATGCTGATTTGCAAGCTTTCCTGCATTCGT
TTGTTAGCTTTTTGAAGCGATCCCAGTCTGCAggttttgatgaatttttg
gcGCGCTTGTAGGCCCTCTTCTTTCGCCGAGATAACCTTTTACATTTCTG
TGTCATCCAAGGTTGAGAATAACGACTTGATGTGTATTTTGAAGGGACGG
ATAGCATGGCATTTTCGATAAGAGCTTTGAGGGCTTTCCACATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008868XLOC_008868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015878-exon-sc0000217-1491911889:131246..131490TCONS_00015878-exon-sc0000217-1491911889:131246..131490Clytia hemisphaericaexon
TCONS_00015878-exon-sc0000217-1510915933:131246..131490TCONS_00015878-exon-sc0000217-1510915933:131246..131490Clytia hemisphaericaexon
TCONS_00015878-exon-sc0000217-1575043694:131246..131490TCONS_00015878-exon-sc0000217-1575043694:131246..131490Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000217supercontigsc0000217:131246..131490 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.907257	3.72242	8.12986	3.49707	5.0186	0.266102	1.08614	0	0	2.07646	1.28088	1.94101	3.14003	0.209497	0.521543	2.20566	0	2.63086	1.7648	0.400178	1.60515	2.86121	1.40472	0.865288	0	0	0	6.1535	1.03927	1.18354
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015878 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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