TCONS_00015876 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015876
Unique NameTCONS_00015876
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015876 ID=TCONS_00015876|Name=TCONS_00015876|organism=Clytia hemisphaerica|type=transcript|length=430bp
NCCTCTAGTTGAGTGTCTACTACCATGATTATTATTTCTTCATTCCAATA
TCGATATTAACACATATAGGTATATTAAAATAGTCAATCAACATCTTGTA
TATATGTATATACTATGCcattcaaaataccaaaaatattctcaagTTTC
CAATCAATTTAATTGAATGTCAAGAGTACGAATTCAATAAGATTGGGTTA
ATCATTCCACCATTTATGTAATCAGCCTTTTTAGAGCTTCAAATATCTGC
AAGTTTTGCAAACACCAAAGTTAAGTAGAAAAGTGATCAGCCATAATAAA
TGATAAACATTCACAACATATTAGTTCATTAACTCATCTGTCTTTTGGTA
CTGTAGGCCAGGTCGTcctcaaaagtttaaaagtgtCCTAAAGTCTTTGA
AGCTCATCATTTGATCATCTTTGAGTACAN
Run BLAST on NCBI

transcript from alignment at sc0000217:91865..92294

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015876 ID=TCONS_00015876|Name=TCONS_00015876|organism=Clytia hemisphaerica|type=transcript|length=430bp|location=Sequence derived from alignment at sc0000217:91865..92294 (Clytia hemisphaerica)
NTGTACTCAAAGATGATCAAATGATGAGCTTCAAAGACTTTAGGacactt
ttaaacttttgaggACGACCTGGCCTACAGTACCAAAAGACAGATGAGTT
AATGAACTAATATGTTGTGAATGTTTATCATTTATTATGGCTGATCACTT
TTCTACTTAACTTTGGTGTTTGCAAAACTTGCAGATATTTGAAGCTCTAA
AAAGGCTGATTACATAAATGGTGGAATGATTAACCCAATCTTATTGAATT
CGTACTCTTGACATTCAATTAAATTGATTGGAAActtgagaatatttttg
gtattttgaatgGCATAGTATATACATATATACAAGATGTTGATTGACTA
TTTTAATATACCTATATGTGTTAATATCGATATTGGAATGAAGAAATAAT
AATCATGGTAGTAGACACTCAACTAGAGGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008866XLOC_008866Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015876-exon-sc0000217-1491911889:91865..92294TCONS_00015876-exon-sc0000217-1491911889:91865..92294Clytia hemisphaericaexon
TCONS_00015876-exon-sc0000217-1510915933:91865..92294TCONS_00015876-exon-sc0000217-1510915933:91865..92294Clytia hemisphaericaexon
TCONS_00015876-exon-sc0000217-1575043694:91865..92294TCONS_00015876-exon-sc0000217-1575043694:91865..92294Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000217supercontigsc0000217:91865..92294 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.52747	0.985838	0.55905	0.100729	0.87475	1.38291	0.379212	0.706169	1.56451	0.841076	0	0.678892	0.877425	0.639412	0.940597	1.52435	0.696917	1.72624	1.40677	3.99235	7.48507	3.35809	6.70669	4.9707	0.447828	0.654875	24.6603	12.8902	22.7195	23.1832
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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