TCONS_00015828 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015828
Unique NameTCONS_00015828
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length713

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015828 ID=TCONS_00015828|Name=TCONS_00015828|organism=Clytia hemisphaerica|type=transcript|length=713bp
ggggttactagtggccgcctatagcagtgcctatagaccaagagtaaggc
ctaaaagcctggagctgtccaTTGTTTTGACTACAATTTTTGATAACTAT
GACTTTGTTGTGTTATTTGTATATATAACCTCAAACTTTAAAGTTTGTGT
ACAGTATTCTGTTTCTCTTCTTACCAAGTaacagaaagaagaaaatgggg
gtattttttatatctttatgCTTTGTGTTAGCTATCACGCCAATTGTGTA
CAATCAAGATGTTGAAGATCTGTCCGCTTGTAACGTCGATCTCGGATTTA
TCATCGATGAATCGGCTTCAATGACTGAATCAGGCTATCGACAAGCAATC
GCCTTTGTCGAAAAAATAGTCAGTAATTTCACACTTGGACCTAACCATAC
AAGAGTCTCGTTGATGACATTTTCAACATTCCCTTTCCCACATTTCGGCT
TCAATGATGTCCAGTCCACAGATTTCACCAGCTTCAAGAATTATTTAGCA
ACTATCCCATATCTAGAGGGATTCACCTATACAAACCAGGCATTGGATTT
AGCACGTACTACAGTCTTCAATACATTCAATGGCGATCGACCAGACTATA
GGAGTGTTGCTGTGGTCCTCACGGATGGTAAGAGTTCTTCTGATATAAGC
TTTGTCGAGGAAGCTTCAAGCAAACTGCTCAATTCAGCTGTTAAAGTGTT
AGTGGTTGGTGTA
Run BLAST on NCBI

transcript from alignment at sc0000217:62544..68203-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015828 ID=TCONS_00015828|Name=TCONS_00015828|organism=Clytia hemisphaerica|type=transcript|length=5660bp|location=Sequence derived from alignment at sc0000217:62544..68203- (Clytia hemisphaerica)
GGGGTTACTAGTGGCCGCCTATAGCAGTGCCTATAGACCAAGAGTAAGGC
CTAAAAGCCTGGAGCTGTCCATTGTTTTGACTACAATTTTTGATAACTAT
GACTTTGTTGTGTTATTTGTATATATAACCTCAAACTTTAAAGTTTGTGT
ACAGTATTCTGTTTCTCTTCTTACCAAGTAACAGAAAGAAGAAAATGGGG
GTATTTTTTATATCTTTATGCTTTGTGTTAGGTAAGTTGTTTTTTACTTT
TTGTTATGTAGTCAGGTAGAATTGCATAACTACCCAGACAAAAATGATGT
AGAGATGAAATTTTGCACAGAGGTCCAGGAACATGTCAGGAATCACCAAA
AAAAAGCCCCACCCCCAGGAAGATGGGAGCACGCTTAAATCCATAATAGC
GGACATGGTACTTTTTTCTATAATTAATAAACCCTTGATAACTGATTTTC
AATAGTTTTCAAATGTCAAAAATATCTAGACAGGAAGATTCCTCTCGATG
AGTAGATAAAGAAAATGGGGTCACTTTTGAAATTTAGTCCATGTGGTCCC
GAGATATAACCTTTAAAGTCCAAAAATTGACGATTTTGATGACGTCAGCA
TTTTTACTGAGATGGATAAATTGGAACATTGACAAACTAATCATGTAGCC
CTGATCATGGGCTNCTGAGATGGATAAATTGGAACGTTGATGAACTAATA
ATGTAGCCCTGATCATGGGCTTTCAGAAAAATATATGGTCTAATATGTTT
AGATCAGCCGTTGGCGAGATATAACGATTTTAAAATGGTTTAAAACGCTT
ATTTTTGCTGAGTCAGCACTTTTTTTCGATTTTAAAATCTCGCCAACGGT
TGGTTGTAGAAAAAAGTACCATGTCCGCCATTATGGATTTGAGGGTGTTC
CCATCCTCCAGGGGATGGTACTTTTTTTGGTGATTCCTGACATGTTCCTG
GACCTCTGTGCAAAATTTCATCTCTACACCATTTTTGTCCCGGTTTTGGC
GGTTTATGACCTAATTCTATACCTCACTAATGAATTATGATAAAAATAGT
GGGTGGGCATTGGAATATAGCTTAGATGAAGAGTTTACTAAATTTTGGGT
TCAAACTTGAGTAGGGCTATAAAACTATTCTAAGGGGGGCGTACGGGGTT
TGCAATTTTCCGAAATTCCGTAAAAAAATACTTGCAATTCCGATACCGAT
TTTTTGGGGTATTTTTCCTTGTTTTGACTAATTTTTCATCAAATTTAATT
GTTCATGTATGAATTCCGAAAAAAAGGGGATAAAAACTTTATACTACCGA
AATTTCGAAGCAAAAATTCATGGATTTCTGATACCGAAACAATTTCAGAA
TTCCGAAATACCGAAGGAATTTTTCCTTGATTTCCGAAATACCGTACGCC
CCCACTTCTGATATGTGATAGATTAGTTCTCAGCTGTCAGTCGAACTCGA
ATCTTTCGAATGTGTGTCATCAGTCAGTGATTTTGTAAGATTGTAATTCT
AACATAAGTGTTTCCGCTTCATATAAATCAGACACATATTTCATATCAGG
ACAGTGTCTTGCTATAGTTACATTATGCTGATAATATGCAAAACAATGTT
TTTCTTTTCCTCGTTCTGACCAATCTTGCTCTGCATCCGTGTCAATTCTA
TGTAAAAAAGCTTGCGAATTAAAATTGATGAGTAAGCAAACGATATCATT
CTTATTTGAAAAGAAAACCTTAAGATTTTAATTTTAGGGTTCTAGATGCA
TTTTATTGTAAAACTTTTGGACAGGCTGGAGAATTCAAAAATTGGTCTGA
TTTGAAATTTTGACTGAAATTTGCGCACTGGGTCCTTGGGCGAATCCTTT
GGGCTTTTTTATTATGATTTTGTAATCTACATTTTTAGGGCCTGGGGACG
AATTTTGGCGCTAAAACGAGGGTAAAACGTTGCAGTGGGACACGGGTAGA
CTGGAGATTCGAAGTACAAGAATATTCAAATGATATAGTTTCAAATTAAC
GAGAGTAAAGTTGGAAAATCTCAAACAAAACTAGACGAAAAATGAATTTT
TCTTGTATTTTGAAATCTTTTTTATGACACTTATGTTTTTATTTTGCCTC
GCCTCACAGGCTTTTTGGGACCAGATTCTTATCACTATTNCAAAATTGAC
GAGTAAGCAAACGATATCACTCTTATTTGAAAAGAAAACCTTTAGATTTT
AATTTTAGGGTTCTAGATGCATTTTATTGTAAAACTTTTGGACAGGCTGG
AGAATTCAAAAATTGGTCTGATTTGACTGAAATTTTGACTGAAATTTGCG
CACTGGGTCCTTGGGCGAATCCTTTGGGCTTTTTTATTATGATATATTTG
TAATCTACATTTTTAGGGCCTGGGGACGAATTTTGGCGCTAAAACGAGGG
TAAAACGTTACAGTGGGACACGGGTAGACTGGAGGTTCGAAGTACAAGAA
TATTCAAATGATATAGTTTCAAATTAACGAGAGTAAAGTTGGAAAATCTC
AAACAAAACTAGACGAAAAATGAATTTTTCTTGTATTTTGAAATCTTTTT
TATGACACTTATGTTTTTATTTTGCCTCGCCTCACAGGCTTTTTGGGACC
AGATTCTTATCACTATTTTTGCGAAACAGCTTGATCCAAACTGATATGAT
GCAGAAGAAAATATATACTCATACTTTATATTTTTCCAGTGATTTTCGGT
CACTACACATATAGACAGGAGAGCCGTCCTGTATTTTTATAATCTGATAT
ATACAGGACGGGTACAAGCTGTGAGGCAGTTCTGCCTCAAGAGTTTACAT
TGGGAAATTCGAATTTAGCGCTGTTCTCACTTACTAAAATAAAAACCAAA
TTTTGGAACTTGCGCTTTTTCTAAGAAAGTGTGACCAGTAAAGAAATAAC
AAAATTTGATTGTTTATGTTTTTAGGATCTGGGAAATTCAAACTATCAGC
CCAAACCATGCTATATATTTCGTCATCAGTATATAAAATAAGAGATCATA
GCATGGATCTCCACGCTACTGCACATATGACCTGAGGAGATAATATGTAT
CTGATATGAAACAGGAATTCTTGTATACAGTGTGTCCCGGAGAATTTTAA
TATTATTTCAATCATTCTAAGCACAGTTAAGATTGTGAGTTTTGAGTATT
TTATTTTATATAACAATGTGTCCGTTTTTTTTCGGATACACTGTATAAGT
AAACGTTTCGAGTCACCAAAAGGAAGCATGTGGCCCGAAATAAAATATGT
ACCTGATATGAAATAGGTTTCTCGTAAACAGCTAAAACTTTTGAATCCTT
TCTTCTTATAGCTATCACGCCAATTGTGTACAATCAAGATGTTGAAGATC
TGTCCGCTTGTAACGTCGATCTCGGATTTATCATCGATGAATCGGCTTCA
ATGACTGAATCAGGCTATCGACAAGCAATCGCCTTTGTCGAAAAAATAGT
CAGTAATTTCACACTTGGACCTAACCATACAAGAGTCTCGTTGATGACAT
TTTCAACATTCCCTTTCCCACATTTCGGCTTCAATGATGTCCAGTCCACA
GATTTCACCAGCTTCAAGAATTATTTAGCAACTATCCCATATCTAGGTAA
GAGAAAATTAATTTGTTAAATGATTTTTTTATCTTTTAATCACAGTCCAG
AGGCGTATTTAGAGTATGTTAAATTGAAAAATAATAAATATGAAAGATTG
TGAAGCAGGCGTATTCCTGATATGATACACAGTTTCCATCGGATCTCATG
TGCTTTATCAACTTTATCAATTTTATGCGTGCGGTAGTTAAAACTTAGAT
TAACATTTAACTCCGTAGTTTTACCTCCTCAATATTTTGCGAGTGAATCT
TTCGCCTTTTAGAGTCTTTAATTTTGAAAATCCAAAAACCTATCTAAAAC
CTAAACCTACCGCCCGATTCATATCGCCCGCCCGACCCATATCGCCCCGC
CTGAAACACACTTTTTGACCTCCTCCGCTCTAGCAAAATCGGGATGATAT
TATTCAGATTCTTGTATTTTCCCTCGCAATCAAAACGACAATTTGTCGTT
TCTGATTGTTTTGATAAAATAACTGATTCTACTCTTAGCTCCCGAATAGA
CGTCCCCACCCGCTTATTAATTTTTGTTTTGTTTGTTTACAAATTTCGCA
AGTACTGTTATGTCCCTTTAAAGGCGATCATGTTATTACCAAGTTTGTTT
GCAACTACATCTTCAGTCAAAATCATACTATTAGTGTATTAGCTTAGAAC
CTTGGCTAGCTACTGCCTACATGACTGTATATGATTATTATTTTTGTTAA
ATTAGAGGGATTCACCTATACAAACCAGGCATTGGATTTAGCACGTACTA
CAGTCTTCAATACATTCAATGGCGATCGACCAGACTATAGGAGTGTAAGG
ATAATTGAATTTCTACACTGTTTACTTATTAAACGTCAAAAGAAAAACTT
GCAATTTGAATATCCCGATCTTTTGACCAAGCAGTCTTAGGAAAAGTATT
TACAAGTTTTGCTTAAGACTACAGAAGGAACCAACATACCAAATATCTCA
GGGTCCATCTGATTATCCCTTTTAGGTTGCTGTGGTCCTCACGGATGGTA
AGAGTTCTTCTGATATAAGCTTTGTCGAGGAAGCTTCAAGCAAACTGCTC
AATTCAGCTGTTAAAGTGTTAGTGGTTGGTGTAGGAAGTGGCGTCGTTCA
AGCAGAGCTAGAAGCGATTGCCGGAGACAAGTTCAATATTTTCAGTGTAT
CTGGCAATGATCAATTAAATTCTCTTGTGGAAGCTATATTGCCACCTATT
TGCAAAGGTAAGAGTCGTATTCTTTACTTATGCTGTTTTTTTTGTCGAAG
CTGGTATTTAAATCCGAAATTTAACAAGCATCAGTTTTCAGCATCCAGTT
TTAAACGAAAAAGATGTTATAGAAGCAAAATACAAAAATTTTCATCCATA
GAAAGATATGAATATAAGTTAAGTCGCCTACAGAAATTTGCGGGAAAAGA
TTTATTTACCAAGAGATTTTTACATGAGTTTTTTGCCGACGATATTTTTA
CCAGTAAGTTAAGCGCCCCCTTTATCCACCTGGTCTTTGGCTCTCCTCAC
CATTTTCGATAGTTTCGCTCTTTTTTCGTGAACTATTTGCTCATTCCTGT
CTATTAGGGATTATTACCTTAAGGGAAGAAATTTTCGCGGGAACAAAATT
TCGCGGTTTTCGCGGATTTTGACTAAAACCGCGAAATTAAGTTCCCGCGA
AATTTTACAAAATCGTCAATCCGCGAAATTAAATTCCCGCGAAATTTAAT
TTATTTCACGCATTCCCCCAAATTCGTACNTCTTCAATACATTCAATGGC
GATCGACCAGACTATAGGAGTGTAAGGATAATTGAATTTCTACACTGTTT
ACTTATTAAACGTCAAAAGAAAAACTTGCAATTTGAATATCCCGATCTTT
TGACCAAGCAGTCTTAGGAAAAGTATTTACAAGTTTTGCTTAAGACTACA
GAAGGAACCAACATACCAAATATCTCAGGGTCCATCTGATTATCCCTTTT
AGGTTGCTGTGGTCCTCACGGATGGTAAGAGTTCTTCTGATATAAGCTTT
GTCGAGGAAGCTTCAAGCAAACTGCTCAATTCAGCTGTTAAAGTGTTAGT
GGTTGGTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008851XLOC_008851Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015828-exon-sc0000217-1575043694:67973..68203TCONS_00015828-exon-sc0000217-1575043694:67973..68203Clytia hemisphaericaexon
TCONS_00015828-exon-sc0000217-1575043694:64608..64892TCONS_00015828-exon-sc0000217-1575043694:64608..64892Clytia hemisphaericaexon
TCONS_00015828-exon-sc0000217-1575043694:63810..63898TCONS_00015828-exon-sc0000217-1575043694:63810..63898Clytia hemisphaericaexon
TCONS_00015828-exon-sc0000217-1575043694:62544..62651TCONS_00015828-exon-sc0000217-1575043694:62544..62651Clytia hemisphaericaexon
TCONS_00015828-exon-sc0000217-1510915933:67973..68203TCONS_00015828-exon-sc0000217-1510915933:67973..68203Clytia hemisphaericaexon
TCONS_00015828-exon-sc0000217-1510915933:64608..64892TCONS_00015828-exon-sc0000217-1510915933:64608..64892Clytia hemisphaericaexon
TCONS_00015828-exon-sc0000217-1510915933:63810..63898TCONS_00015828-exon-sc0000217-1510915933:63810..63898Clytia hemisphaericaexon
TCONS_00015828-exon-sc0000217-1510915933:62544..62651TCONS_00015828-exon-sc0000217-1510915933:62544..62651Clytia hemisphaericaexon
TCONS_00015828-exon-sc0000217-1491911889:67973..68203TCONS_00015828-exon-sc0000217-1491911889:67973..68203Clytia hemisphaericaexon
TCONS_00015828-exon-sc0000217-1491911889:64608..64892TCONS_00015828-exon-sc0000217-1491911889:64608..64892Clytia hemisphaericaexon
TCONS_00015828-exon-sc0000217-1491911889:63810..63898TCONS_00015828-exon-sc0000217-1491911889:63810..63898Clytia hemisphaericaexon
TCONS_00015828-exon-sc0000217-1491911889:62544..62651TCONS_00015828-exon-sc0000217-1491911889:62544..62651Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000217supercontigsc0000217:62544..68203 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.75741	1.25337	0.810913	0.749814	0.554196	0	0.726969	1.75721e-09	0.395432	0.0347979	0.0590247	0.682593	0.389753	0	0.255702	0.948654	0.0251729	0.402274	0.391521	0.474703	2.26863	0.246335	0.331637	7.91103	10.229	8.33409	1.55648	0.788422	1.15651	0.40643
Blast
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BLAST of TCONS_00015828 vs. Swiss-Prot (Human)
Match: COCA1 (Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL12A1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 7.459e-18
Identity = 50/160 (31.25%), Postives = 81/160 (50.62%), Query Frame = 3 
Query:  234 ITPIVYNQDVEDLSACNVDLGFIIDESASMTESGYRQAIAFVEKIVSNFTLGPNHTRVSLMTFSTFPFPHFGFNDVQSTDFTSFKNYLATIPYLEGFTYTNQALDLARTTVFNTFNGDRPDYRSVAVVLTDGKSSSDISFVEEASSKLLNSAVKVLVVGV 713
            + PI+ +  +E L+    D+  ++D S S+  + +R   +F+ +IV  F +GP   +++L  +S  P   +  N     D  S    +A +PY  G T T  AL+  R   F T  G RP  R + V++TDGKS  D   VE  S KL +  V++  +G+
Sbjct: 1182 VMPIL-SSGMECLTRAEADIVLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLN--AHRDKKSLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQDD---VEAPSKKLKDEGVELFAIGI 1335
The following BLAST results are available for this feature:
BLAST of TCONS_00015828 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COCA17.459e-1831.25Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL... [more]
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