TCONS_00015803 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015803
Unique NameTCONS_00015803
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length520

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015803 ID=TCONS_00015803|Name=TCONS_00015803|organism=Clytia hemisphaerica|type=transcript|length=520bp
CCGCTGGTCatggtcttttttttcttttatctctTCGTAGCGAGCCTCTT
TTATAATGGACTTTAAACCGCTTGTTGTTACTTGAGGCGTAATTTTAGTT
GCGTCAGCGTAGGACGTTTTGGCTTTGGTTACTTGATTCTCAAACTTGGT
CAAGGATGACTGGATTTCTTCTAGAATTGAAGATTTAATTGTCTccccaa
aagttttaaattgcTCTTGAATCTTCTTGTCAAGAGCTTTGACGGTGTAT
TCTTCGACTTTGTTTGTTCTTTGTGTGTTATATTTAACTTTCCAATGATT
TAACTCTTTATCTTTCTGTTCAATAGATTACTTCAGTTCTTCTTCTTTTC
CCTGGCATAGTAAGACTATATCTTTGGATACTTCCACACAGTTAAAACAG
ATGAAAGTAGATTTTGCTGTGGAGCGAGTTGTTTTATTTCTCTGGCTATT
TAGATGAGCTTGCACTTGGTACGCAGGGAGTTGCGAGCACTTGAAGTGCA
CATGGCGAGAGCATTTTACN
Run BLAST on NCBI

transcript from alignment at sc0000216:422189..422708

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015803 ID=TCONS_00015803|Name=TCONS_00015803|organism=Clytia hemisphaerica|type=transcript|length=520bp|location=Sequence derived from alignment at sc0000216:422189..422708 (Clytia hemisphaerica)
NGTAAAATGCTCTCGCCATGTGCACTTCAAGTGCTCGCAACTCCCTGCGT
ACCAAGTGCAAGCTCATCTAAATAGCCAGAGAAATAAAACAACTCGCTCC
ACAGCAAAATCTACTTTCATCTGTTTTAACTGTGTGGAAGTATCCAAAGA
TATAGTCTTACTATGCCAGGGAAAAGAAGAAGAACTGAAGTAATCTATTG
AACAGAAAGATAAAGAGTTAAATCATTGGAAAGTTAAATATAACACACAA
AGAACAAACAAAGTCGAAGAATACACCGTCAAAGCTCTTGACAAGAAGAT
TCAAGAgcaatttaaaacttttggggAGACAATTAAATCTTCAATTCTAG
AAGAAATCCAGTCATCCTTGACCAAGTTTGAGAATCAAGTAACCAAAGCC
AAAACGTCCTACGCTGACGCAACTAAAATTACGCCTCAAGTAACAACAAG
CGGTTTAAAGTCCATTATAAAAGAGGCTCGCTACGAagagataaaagaaa
aaaaagaccatGACCAGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008838XLOC_008838Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015803-exon-sc0000216-1491911889:422189..422708TCONS_00015803-exon-sc0000216-1491911889:422189..422708Clytia hemisphaericaexon
TCONS_00015803-exon-sc0000216-1510915933:422189..422708TCONS_00015803-exon-sc0000216-1510915933:422189..422708Clytia hemisphaericaexon
TCONS_00015803-exon-sc0000216-1575043694:422189..422708TCONS_00015803-exon-sc0000216-1575043694:422189..422708Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000216supercontigsc0000216:422189..422708 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.0345	1.00164	1.25198	0.618034	1.40692	0.51673	0.879979	0.411913	0.0961299	0.727896	0	0.173712	0.744931	0.157833	0.148109	0.208545	0.180757	0.292791	0.727594	0.126896	0.367914	0.43054	0.392393	0.178514	1.07205	0.843354	0.156421	1.16856	0	0.464525
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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