|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015797 ID=TCONS_00015797|Name=TCONS_00015797|organism=Clytia hemisphaerica|type=transcript|length=3587bp
ctacaaaaaccaaaaaatcttGGGGTTAGGAAAAGTTGAAGATTATCACC
GAAACGAACTTAAAAGTTGTATATTTTCTTGACATAACCCTTGATATCAA
CCCTTAGTACATAACGATCTCATGTGAAACCAAACAGTGTACCAATATAT
GTTAACGTCAACTCGCCCACCTAAAACTCACTCGCGACAATTGGGTGATT
TGCATAAAATTGTTCCGAAAGGCTGAacaaattctcaattttttttttct
ttcaaaaatttaacttcttttggtgtttttgtattttgtcaGGTTTTAAG
AAATAGTTTCACCACACTTTATAGGCTGTTTtcctgttttcaattttttc
cacgGGTTTACAGCTAAAAATCTGTCCCGTACGCGACAAAATTGTAGCAA
TGTTAAAAGCCTCTCACTTTGAAGAGAAAATTGTAATTCAGAACCAAATA
ACTTTTGGGAAATCTTCACTAACCCTAATTGACTTTCAGAAAAACGTTTT
CTAAAATAGGTCTATCAGAGTCTATGGGGGTATTTGTGGTATACACCATT
GTACTGTAGGGGAAAAATCACTCTTTAACCCTTGATGACTTTCATTTATA
CAACAAACTTAAAAAATCTTGGATTACTAATCAATATAAAAGATTAGGTC
AAAATAGGATTTTCTCGTTAAAtttaagaattttgaaattttgtcgcGTA
CAGGACAAATGGAAATCCTAATTTTGTCCCGTACGCGACACACAAAGTGT
GAAATATACCGAAAAAGAAAGATACGTATGGTAAAACTTTTAGAGCCTAC
ATAACATAGTACATAAATAAGAGTTCAACTTAAGGGAATACTAGAATAAT
TTTGCTTGTTCCAGCGAAACAACCCCATTACActatttttgggccaaaaa
aagtTACCTTATCTCACAGTACACAATATATTTGGAAAACCGtgccattt
ttcattttggaacAATTTCGCGCCAATCACCCAGCGAACTTTATCAAAAG
aacataggcggttttagaccacgtCGATCTTATTAGAGGAACCAGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTGATATCAACCCTTAGCACATAACGATCTCATGTGAAACCA
AACAATGAACCAATCTATGTTAACGTCAACTCACCCACCTAAAACTCACT
CGCGACAATCGGGTGATTTGCATGAAATTGTTCCGAAAGGCTCAACAAAt
tctcaacatttttttctttcaaaaatttaacttcttttggtgtttttgta
ttttgtcaGGTTTTAAGAAATAGTTTCACCACACTTTATAGGCTGTTTtc
ctgttttcaatttttttccacgGGTTTTACAGCTAAAAATTTGTCCCGTA
CGCGACAAAATTGTAGCAATGTTAAAAGCCTCTCACTTTGAAGAGAAAAT
TGTAATTCAGAACCAAATAACTTTTGGGAAATCTTCACTAACCCTAATtg
actttcagaaaaactttttctaaaataCAAACATTCTGCttaatttccaa
attcgttCAGCTGGTTGGAGGGAAGTAGAGAAGAGAAGAATAGAGTAAGa
catttttcaattaatttcgtTCAGCGGTCACATATTTGACTAACCCATAa
tcagttttggggaaaatttagtcCCAACAGAAGGAACCCCCAAAACAAGG
CAGTGGTTGCAGACAGACTATATAACAATACATAAAAAGGGAAATAACTT
TACAAGTAAACAGTTATATTTGATAAATCCTAAATATGATAAAACCTAAA
TTAATCAAACGACTTTATACCCACCGGTAGTTCTATTGATATTCTTACTT
GTCAATAAAAGCTAGTACCATTAGAAATGAAgtatttacagaaaaaaaat
gtcCCTGCATCACGCGACCAAAGCACTAAGCGTTGTGAGAGGTAGTGACG
AAAAACTTGCTCTGTACCACGTGAGCCAAGCAACTACCTGCCATAGTCTA
TTAGAAAACGAACTCAGCCTGCGATATAATACAAACTATGATGATCTTGA
CAACTTTCCAGCCCAACACATTAACGACTGAAATCTAACTACCACCTGGG
TATCCGAGAACCAGGTAACCCTGAAATTCTcctaaaatttcaattaaata
aATTCAGCGTAAAGTAATACAGTGTAACTAAACTATAGAGCGTAGAAAAT
CCCTAGGAGACGATGAAACCTATATCACACAATAACCTCACACCTCGATC
TCAAAGACACTTATAGGGTGAAACAAGACCGTCGAAGTTTCTGAGAGAAC
CGAACCGCCGTTCGAAATTCCCTTAAAGTAGTGACTCCTCTTAAATAGGG
CTGACCTGGGACGTAACACACACGTACACTCACAAGCTCTGGTATTTTAC
ATCCACAGCAGGAATGTGATTGGACGTACTTAGCCAATCTTTCCAAGATT
GAGAGAATCAGACATACGTCGAGCATTCCGTTGCaaactttttttgcttc
caaAACTTGTAAATGAAAAACGGGATGATCGACAAGACGTATCTTCGATT
TGAACCTAATATCATTTTCAAGATGGGAAACATTGGGCCTTGTGGTAACC
GAGTCCAAGCAAGTGGGGTTGATTACTACAATCATCTACATCACTTATCG
CTCATGCGATATTGTACAATATATTGACAATAGACATTAatgggacataa
cagtacttgcgaaatttgtaaacaaactgtatgcagcagctatacaaaat
caaaacaaatgtcacatgtcaaaataaaaaatctaaccaaatatggctaa
ttttgattgttcaattgttttacaagtttgttttggacacgtgattttaa
ttgttctctttaatgacacgtggttcgcgcaatgtttacattttactact
ttaatgtccctttaatgcTCACCCAACCTCTGGCTGGATGCCAAGAGTTT
CCAAAACGTATTTCGTTCGAGATAGCGCAGTACAACTAtcaattgatttg
aaattgCGAACGAGAAAGTAATATTAAATCCTTCTTACTCTTTACCTCCA
ATGCCCccgaaaacaaacaaaaaatgacatttcTACTCCCGAATTCCATT
TGAAATAAAAGATGCTACTTCGAGGTATTGACACAGACCACCGACTTCTC
AAAGCAACCCTATGTACTCACCCAACCAGAATTGCTCGAAGAAGATACAA
CAAAACACCAAACGAACCGAAACGTCATGTTAAGTCTCTACCAATACCTA
CAGTTAGATAAAACATTGTGTGTTGGGAATCTGAATCGAAAGCTTGAAGC
GAATCGTCCGTTCGATGAAGACGTAAATGTATTTTcacagaatttttcaa
aaactgttgaGGAAGCTGCAAACGAGGTAGACTGgggtcgtttataatgc
gtgtaatacagtagtataggcgctACATGATAATACGAGATAATATAATA
CTTGttacgataattgttacgggatttccaaaatttccatcCCGACAAAT
GTCACGTACTAACTATTGGCAAATTCTCTGACATCAAACATGCCTATCCA
TATTGTTTGGATGGAAATCAGCTTGAACATGTTTTTG Run BLAST on NCBI transcript from alignment at sc0000216:343890..347476 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015797 ID=TCONS_00015797|Name=TCONS_00015797|organism=Clytia hemisphaerica|type=transcript|length=3587bp|location=Sequence derived from alignment at sc0000216:343890..347476 (Clytia hemisphaerica)
CAAAAACATGTTCAAGCTGATTTCCATCCAAACAATATGGATAGGCATGT
TTGATGTCAGAGAATTTGCCAATAGTTAGTACGTGACATTTGTCGGgatg
gaaattttggaaatcccgtaacaattatcgtaaCAAGTATTATATTATCT
CGTATTATCATGTagcgcctatactactgtattacacgcattataaacga
cccCAGTCTACCTCGTTTGCAGCTTCCtcaacagtttttgaaaaattctg
tgAAAATACATTTACGTCTTCATCGAACGGACGATTCGCTTCAAGCTTTC
GATTCAGATTCCCAACACACAATGTTTTATCTAACTGTAGGTATTGGTAG
AGACTTAACATGACGTTTCGGTTCGTTTGGTGTTTTGTTGTATCTTCTTC
GAGCAATTCTGGTTGGGTGAGTACATAGGGTTGCTTTGAGAAGTCGGTGG
TCTGTGTCAATACCTCGAAGTAGCATCTTTTATTTCAAATGGAATTCGGG
AGTAgaaatgtcattttttgtttgttttcggGGGCATTGGAGGTAAAGAG
TAAGAAGGATTTAATATTACTTTCTCGTTCGcaatttcaaatcaattgaT
AGTTGTACTGCGCTATCTCGAACGAAATACGTTTTGGAAACTCTTGGCAT
CCAGCCAGAGGTTGGGTGAgcattaaagggacattaaagtagtaaaatgt
aaacattgcgcgaaccacgtgtcattaaagagaacaattaaaatcacgtg
tccaaaacaaacttgtaaaacaattgaacaatcaaaattagccatatttg
gttagattttttattttgacatgtgacatttgttttgattttgtatagct
gctgcatacagtttgtttacaaatttcgcaagtactgttatgtcccatTA
ATGTCTATTGTCAATATATTGTACAATATCGCATGAGCGATAAGTGATGT
AGATGATTGTAGTAATCAACCCCACTTGCTTGGACTCGGTTACCACAAGG
CCCAATGTTTCCCATCTTGAAAATGATATTAGGTTCAAATCGAAGATACG
TCTTGTCGATCATCCCGTTTTTCATTTACAAGTTttggaagcaaaaaaag
tttGCAACGGAATGCTCGACGTATGTCTGATTCTCTCAATCTTGGAAAGA
TTGGCTAAGTACGTCCAATCACATTCCTGCTGTGGATGTAAAATACCAGA
GCTTGTGAGTGTACGTGTGTGTTACGTCCCAGGTCAGCCCTATTTAAGAG
GAGTCACTACTTTAAGGGAATTTCGAACGGCGGTTCGGTTCTCTCAGAAA
CTTCGACGGTCTTGTTTCACCCTATAAGTGTCTTTGAGATCGAGGTGTGA
GGTTATTGTGTGATATAGGTTTCATCGTCTCCTAGGGATTTTCTACGCTC
TATAGTTTAGTTACACTGTATTACTTTACGCTGAATttatttaattgaaa
ttttaggAGAATTTCAGGGTTACCTGGTTCTCGGATACCCAGGTGGTAGT
TAGATTTCAGTCGTTAATGTGTTGGGCTGGAAAGTTGTCAAGATCATCAT
AGTTTGTATTATATCGCAGGCTGAGTTCGTTTTCTAATAGACTATGGCAG
GTAGTTGCTTGGCTCACGTGGTACAGAGCAAGTTTTTCGTCACTACCTCT
CACAACGCTTAGTGCTTTGGTCGCGTGATGCAGGgacattttttttctgt
aaatacTTCATTTCTAATGGTACTAGCTTTTATTGACAAGTAAGAATATC
AATAGAACTACCGGTGGGTATAAAGTCGTTTGATTAATTTAGGTTTTATC
ATATTTAGGATTTATCAAATATAACTGTTTACTTGTAAAGTTATTTCCCT
TTTTATGTATTGTTATATAGTCTGTCTGCAACCACTGCCTTGTTTTGGGG
GTTCCTTCTGTTGGgactaaattttccccaaaactgatTATGGGTTAGTC
AAATATGTGACCGCTGAacgaaattaattgaaaaatgtCTTACTCTATTC
TTCTCTTCTCTACTTCCCTCCAACCAGCTGaacgaatttggaaattaaGC
AGAATGTTTGtattttagaaaaagtttttctgaaagtcaATTAGGGTTAG
TGAAGATTTCCCAAAAGTTATTTGGTTCTGAATTACAATTTTCTCTTCAA
AGTGAGAGGCTTTTAACATTGCTACAATTTTGTCGCGTACGGGACAAATT
TTTAGCTGTAAAACCcgtggaaaaaaattgaaaacaggaAAACAGCCTAT
AAAGTGTGGTGAAACTATTTCTTAAAACCtgacaaaatacaaaaacacca
aaagaagttaaatttttgaaagaaaaaaatgttgagaaTTTGTTGAGCCT
TTCGGAACAATTTCATGCAAATCACCCGATTGTCGCGAGTGAGTTTTAGG
TGGGTGAGTTGACGTTAACATAGATTGGTTCATTGTTTGGTTTCACATGA
GATCGTTATGTGCTAAGGGTTGATATCANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGTTCC
TCTAATAAGATCGacgtggtctaaaaccgcctatgttCTTTTGATAAAGT
TCGCTGGGTGATTGGCGCGAAATTgttccaaaatgaaaaatggcaCGGTT
TTCCAAATATATTGTGTACTGTGAGATAAGGTAactttttttggcccaaa
aatagTGTAATGGGGTTGTTTCGCTGGAACAAGCAAAATTATTCTAGTAT
TCCCTTAAGTTGAACTCTTATTTATGTACTATGTTATGTAGGCTCTAAAA
GTTTTACCATACGTATCTTTCTTTTTCGGTATATTTCACACTTTGTGTGT
CGCGTACGGGACAAAATTAGGATTTCCATTTGTCCTGTACgcgacaaaat
ttcaaaattcttaaaTTTAACGAGAAAATCCTATTTTGACCTAATCTTTT
ATATTGATTAGTAATCCAAGATTTTTTAAGTTTGTTGTATAAATGAAAGT
CATCAAGGGTTAAAGAGTGATTTTTCCCCTACAGTACAATGGTGTATACC
ACAAATACCCCCATAGACTCTGATAGACCTATTTTAGAAAACGTTTTTCT
GAAAGTCAATTAGGGTTAGTGAAGATTTCCCAAAAGTTATTTGGTTCTGA
ATTACAATTTTCTCTTCAAAGTGAGAGGCTTTTAACATTGCTACAATTTT
GTCGCGTACGGGACAGATTTTTAGCTGTAAACCcgtggaaaaaattgaaa
acaggaAAACAGCCTATAAAGTGTGGTGAAACTATTTCTTAAAACCtgac
aaaatacaaaaacaccaaaagaagttaaatttttgaaagaaaaaaaaaat
tgagaatttgtTCAGCCTTTCGGAACAATTTTATGCAAATCACCCAATTG
TCGCGAGTGAGTTTTAGGTGGGCGAGTTGACGTTAACATATATTGGTACA
CTGTTTGGTTTCACATGAGATCGTTATGTACTAAGGGTTGATATCAAGGG
TTATGTCAAGAAAATATACAACTTTTAAGTTCGTTTCGGTGATAATCTTC
AACTTTTCCTAACCCCaagattttttggtttttgtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015797-exon-sc0000216-1491911889:343890..347476 | TCONS_00015797-exon-sc0000216-1491911889:343890..347476 | Clytia hemisphaerica | exon |
| TCONS_00015797-exon-sc0000216-1510915933:343890..347476 | TCONS_00015797-exon-sc0000216-1510915933:343890..347476 | Clytia hemisphaerica | exon |
| TCONS_00015797-exon-sc0000216-1575043694:343890..347476 | TCONS_00015797-exon-sc0000216-1575043694:343890..347476 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000216 | supercontig | sc0000216:343890..347476 . |
Blast
The following BLAST results are available for this feature:
|
