TCONS_00015794 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015794
Unique NameTCONS_00015794
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015794 ID=TCONS_00015794|Name=TCONS_00015794|organism=Clytia hemisphaerica|type=transcript|length=434bp
TGTTTGTATGTAAAGTCTGAAGACCACCACATCGAATAAACTCTGACGCT
TCAACATCAGGCTGCACTCATCCCACAGTGCAGCCATTCAGCTAAGTGAC
TAATACTATTTACAACTATACTCTAACATCATGTGACAAGATTCTTCATT
GTAATACAATAAAGGAAGTACATTTCTCAATTACTTTTGCTTTATACTCT
CATGCACTCCATTTATCATGGATCAAAGTGATAATTCCTCTGAGGGTGAT
CAGTCCCAAAAATGTACCAAAGAATTAGAAACTGAGGATCTAATAGCAGA
ACTTTGTTTTTATGCCTCCTTGGATTTTGTAAATTTCTGTTTGCGGAAGT
ATCAATATGGCAAAAGTGTACTAGATATTGAAAATGACATGTACAAAGAA
AAACTTGACACCTTGAAAGAAACTGCAAACTTCT
Run BLAST on NCBI

transcript from alignment at sc0000216:319439..319872

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015794 ID=TCONS_00015794|Name=TCONS_00015794|organism=Clytia hemisphaerica|type=transcript|length=434bp|location=Sequence derived from alignment at sc0000216:319439..319872 (Clytia hemisphaerica)
AGAAGTTTGCAGTTTCTTTCAAGGTGTCAAGTTTTTCTTTGTACATGTCA
TTTTCAATATCTAGTACACTTTTGCCATATTGATACTTCCGCAAACAGAA
ATTTACAAAATCCAAGGAGGCATAAAAACAAAGTTCTGCTATTAGATCCT
CAGTTTCTAATTCTTTGGTACATTTTTGGGACTGATCACCCTCAGAGGAA
TTATCACTTTGATCCATGATAAATGGAGTGCATGAGAGTATAAAGCAAAA
GTAATTGAGAAATGTACTTCCTTTATTGTATTACAATGAAGAATCTTGTC
ACATGATGTTAGAGTATAGTTGTAAATAGTATTAGTCACTTAGCTGAATG
GCTGCACTGTGGGATGAGTGCAGCCTGATGTTGAAGCGTCAGAGTTTATT
CGATGTGGTGGTCTTCAGACTTTACATACAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008830XLOC_008830Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015794-exon-sc0000216-1491911889:319439..319872TCONS_00015794-exon-sc0000216-1491911889:319439..319872Clytia hemisphaericaexon
TCONS_00015794-exon-sc0000216-1510915933:319439..319872TCONS_00015794-exon-sc0000216-1510915933:319439..319872Clytia hemisphaericaexon
TCONS_00015794-exon-sc0000216-1575043694:319439..319872TCONS_00015794-exon-sc0000216-1575043694:319439..319872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000216supercontigsc0000216:319439..319872 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.458148	0.247998	0.427798	0	0.637916	0.33606	0.439237	1.52012	0.682988	0.990994	0.225247	1.5044	1.06662	3.13041	0.247316	1.23536	0.118369	0.690263	0.188857	1.15643	1.42425	0.298173	0.418986	0	2.56315	1.92198	0.648627	0.675252	0.20906	0.403412
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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