TCONS_00015784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015784
Unique NameTCONS_00015784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length344

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015784 ID=TCONS_00015784|Name=TCONS_00015784|organism=Clytia hemisphaerica|type=transcript|length=344bp
NNGCTTAGACCCCCGGGACGCAATGTCCGAAGGATTTTGCTTTGTAGCAA
CTAATTTCAGTTCAATCGAGAGAGATTCAAAATTTCGTCTAATCTCatca
gaaatatttttaatatatcTATCTTGTTTTCTCGAAGTTTCAATGTTCTT
GACCCAACAGTAAGCAACACTACTGTCAGTACATAcagtaaatttttcaa
attcaaagttcaTTTCTAAGTGTCTCTTAACAACATTCATGAGACGTGAT
ACAATAGAATAAGTATAGCTACCAACTCCATTCTGGGTGTCGTCAACTTC
TGGTCATCAGGTTTGGTTTTTGATTTCGTCTTGATTGGATTCAC
Run BLAST on NCBI

transcript from alignment at sc0000216:226275..226618

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015784 ID=TCONS_00015784|Name=TCONS_00015784|organism=Clytia hemisphaerica|type=transcript|length=344bp|location=Sequence derived from alignment at sc0000216:226275..226618 (Clytia hemisphaerica)
GTGAATCCAATCAAGACGAAATCAAAAACCAAACCTGATGACCAGAAGTT
GACGACACCCAGAATGGAGTTGGTAGCTATACTTATTCTATTGTATCACG
TCTCATGAATGTTGTTAAGAGACACTTAGAAAtgaactttgaatttgaaa
aatttactgTATGTACTGACAGTAGTGTTGCTTACTGTTGGGTCAAGAAC
ATTGAAACTTCGAGAAAACAAGATAgatatattaaaaatatttctgatGA
GATTAGACGAAATTTTGAATCTCTCTCGATTGAACTGAAATTAGTTGCTA
CAAAGCAAAATCCTTCGGACATTGCGTCCCGGGGGTCTAAGCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008820XLOC_008820Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015784-exon-sc0000216-1491911889:226275..226618TCONS_00015784-exon-sc0000216-1491911889:226275..226618Clytia hemisphaericaexon
TCONS_00015784-exon-sc0000216-1510915933:226275..226618TCONS_00015784-exon-sc0000216-1510915933:226275..226618Clytia hemisphaericaexon
TCONS_00015784-exon-sc0000216-1575043694:226275..226618TCONS_00015784-exon-sc0000216-1575043694:226275..226618Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000216supercontigsc0000216:226275..226618 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.6324	1.49487	0	0	2.54428	1.7258	4.1724	3.92458	1.22058	1.69943	0	0.390907	1.07194	1.08061	0.886909	1.34472	0	1.16075	1.11744	0.668134	1.30779	5.72914	1.96824	2.56478	0	1.86172	3.35417	3.212	4.69903	3.0798
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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