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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015782 ID=TCONS_00015782|Name=TCONS_00015782|organism=Clytia hemisphaerica|type=transcript|length=1813bp
GCGAAAAAcaagagaaaaggaaaaaaacgaaaaaaaaaaactaaaaaaaa
actaattgttcttttttgccttttttatggCATCCCTCTTTTGCTTTTCA
CACTTAGCCCATGTCAACCAATCGTCAAAAGATTTTTCGCACTTGACAGG
GCAGTACTTTGGGCCATAGTACTGGGTGTGGGGCGGTACACATGGTTGAC
CACACTGCGAGCAGTTGTATTTTCTCTTTGGTTTAATCATGCCGGTCTGC
GACTCCATTTGCTTGTGGCGGTAGTACGTTGTCTTAGACAAGGCGACAGG
TGGCGCTGATGGAGTCGGTGAAGATTGAGACTGACACGGCTGAGATGGTG
ATGGCAAAGACGAAGATAGAAAGGGTTGAGGCGCAAGCGAAGATGAAGAT
AAGGGTTGAGGCGACGGCGAAGATGAAGATGGTAAGCGTTGAAAGGGTTT
AATGCAGGTTCTGGGTTGTTGCGTGGAAGGTACAAAGAGGGCGGGCTGTA
CAGGTTTGGGTTTGATGGGCCTGTACAACAGTTGGTCAGTTGTTGTTGGC
TCCACTGATGGAGAAAACAGAGAGGCAGCAAACAAAGCTTCATTCGACGG
CGGTGGTGGTTTCGGTTGATCTGTCGACTTCGGCTGTGATGATGGCTTCT
GTTTTCCAGACGTGTTGACTGGCAATGTGAATGCCATCCTGGTACCAGCA
TCAGGGTTTGATTTCATGGTGGTAGGAATCATTACCTTTGATGATTTGGT
CACATTGCCAGGCAGCGATCTGCCCTGAAGGAGGAGGCTGGCTTCGTCGC
GTCTGGCTTTGCGCTTGTGCCAGTGCATCAGGGTGGTCTCGTTCACGTTG
AACAGGTACATCTTCAAGGTGTGCTTTAAGTCACTGTTGGAAACTCTGGC
CTGCACATACTTGTAGTCTTGGATGCACTTCTTCCATCGGGATTCGTTTG
TTCTTTTGTTCCCGGGTGACGTGATGGTGCTGCTGGAAGTGTGCTTAGCC
GTCAGGTGAATGAAGATGGCCTCAACTAACCGGTTCTTGGATGGACACAG
GGAAGGGTAACCAGCAGTGACGTGAGCTCGGCGCATGGCAATAATTTGAG
CATTTCCACCCATCTTGTGCTTCCGCTTGAACTTGCCCTTTGCCGGTTTC
ATTTTGACGGGTGCAAATTTCATTGGGCGTTTGTCAAAATCTTCAAGCAG
CCCAAACAGTCCAACAATCTCCTCACACTTCTTCTTTGACACGCTGATGC
CTTCAACACCAAGGAGTGCCCGGGCCAGATGGTCGACACGGTTCCATCCG
GGGATGCCGAGGGAGTCAACAGATTCGTCCTCCTGATCAGGCTGGGACTC
CTCGTTTTCCTCCACAACTTGCTGGTCACTGGTTTCTGGAGGGACACCTT
CATCAATTTCATCCTCCACACCAGAATCATCATCTTCACCAAGGTTGGAT
TGGATGTACTTGTCATCGTTCAGGTTGACCTTTTCTTCTTTGAAGAAGTA
CTCCATGCCAACCAGCTCGGATGTGTCATCAGAGGGTGCCTCCATTTCAA
CATACTGCTTCCCCAAGACGTGCGTGTGAAGCTGGTTGAAACGGCTGGTC
AATTTGTGGTCGAAGGTGCGAAAGTTTGCAGGTCGTGTTCCAGCCTCTGG
CAATGCTTCCTTCCGCGCGGTGTTCCAGCGTGACAAACCGTCAAGGAGAA
AGGCTTGGAAGTGAAGGCCATTCGCTGATGTGCCTGGAATAAAATCACGA
AGGTGATTGTGGAACGATTCCAGGGAATTGCTTCCTCGCGCACACCTGTA
AATTGGAACGTCC Run BLAST on NCBI protein sequence of TCONS_00015782-protein >TCONS_00015782-protein ID=TCONS_00015782-protein|Name=TCONS_00015782-protein|organism=Clytia hemisphaerica|type=polypeptide|length=586bp
DVPIYRCARGSNSLESFHNHLRDFIPGTSANGLHFQAFLLDGLSRWNTAR
KEALPEAGTRPANFRTFDHKLTSRFNQLHTHVLGKQYVEMEAPSDDTSEL
VGMEYFFKEEKVNLNDDKYIQSNLGEDDDSGVEDEIDEGVPPETSDQQVV
EENEESQPDQEDESVDSLGIPGWNRVDHLARALLGVEGISVSKKKCEEIV
GLFGLLEDFDKRPMKFAPVKMKPAKGKFKRKHKMGGNAQIIAMRRAHVTA
GYPSLCPSKNRLVEAIFIHLTAKHTSSSTITSPGNKRTNESRWKKCIQDY
KYVQARVSNSDLKHTLKMYLFNVNETTLMHWHKRKARRDEASLLLQGRSL
PGNVTKSSKVMIPTTMKSNPDAGTRMAFTLPVNTSGKQKPSSQPKSTDQP
KPPPPSNEALFAASLFSPSVEPTTTDQLLYRPIKPKPVQPALFVPSTQQP
RTCIKPFQRLPSSSSPSPQPLSSSSLAPQPFLSSSLPSPSQPCQSQSSPT
PSAPPVALSKTTYYRHKQMESQTGMIKPKRKYNCSQCGQPCVPPHTQYYG
PKYCPVKCEKSFDDWLTWAKCEKQKRDAIKKAKKNN Run BLAST on NCBI transcript from alignment at sc0000216:193364..195176 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015782 ID=TCONS_00015782|Name=TCONS_00015782|organism=Clytia hemisphaerica|type=transcript|length=1813bp|location=Sequence derived from alignment at sc0000216:193364..195176 (Clytia hemisphaerica)
GGACGTTCCAATTTACAGGTGTGCGCGAGGAAGCAATTCCCTGGAATCGT
TCCACAATCACCTTCGTGATTTTATTCCAGGCACATCAGCGAATGGCCTT
CACTTCCAAGCCTTTCTCCTTGACGGTTTGTCACGCTGGAACACCGCGCG
GAAGGAAGCATTGCCAGAGGCTGGAACACGACCTGCAAACTTTCGCACCT
TCGACCACAAATTGACCAGCCGTTTCAACCAGCTTCACACGCACGTCTTG
GGGAAGCAGTATGTTGAAATGGAGGCACCCTCTGATGACACATCCGAGCT
GGTTGGCATGGAGTACTTCTTCAAAGAAGAAAAGGTCAACCTGAACGATG
ACAAGTACATCCAATCCAACCTTGGTGAAGATGATGATTCTGGTGTGGAG
GATGAAATTGATGAAGGTGTCCCTCCAGAAACCAGTGACCAGCAAGTTGT
GGAGGAAAACGAGGAGTCCCAGCCTGATCAGGAGGACGAATCTGTTGACT
CCCTCGGCATCCCCGGATGGAACCGTGTCGACCATCTGGCCCGGGCACTC
CTTGGTGTTGAAGGCATCAGCGTGTCAAAGAAGAAGTGTGAGGAGATTGT
TGGACTGTTTGGGCTGCTTGAAGATTTTGACAAACGCCCAATGAAATTTG
CACCCGTCAAAATGAAACCGGCAAAGGGCAAGTTCAAGCGGAAGCACAAG
ATGGGTGGAAATGCTCAAATTATTGCCATGCGCCGAGCTCACGTCACTGC
TGGTTACCCTTCCCTGTGTCCATCCAAGAACCGGTTAGTTGAGGCCATCT
TCATTCACCTGACGGCTAAGCACACTTCCAGCAGCACCATCACGTCACCC
GGGAACAAAAGAACAAACGAATCCCGATGGAAGAAGTGCATCCAAGACTA
CAAGTATGTGCAGGCCAGAGTTTCCAACAGTGACTTAAAGCACACCTTGA
AGATGTACCTGTTCAACGTGAACGAGACCACCCTGATGCACTGGCACAAG
CGCAAAGCCAGACGCGACGAAGCCAGCCTCCTCCTTCAGGGCAGATCGCT
GCCTGGCAATGTGACCAAATCATCAAAGGTAATGATTCCTACCACCATGA
AATCAAACCCTGATGCTGGTACCAGGATGGCATTCACATTGCCAGTCAAC
ACGTCTGGAAAACAGAAGCCATCATCACAGCCGAAGTCGACAGATCAACC
GAAACCACCACCGCCGTCGAATGAAGCTTTGTTTGCTGCCTCTCTGTTTT
CTCCATCAGTGGAGCCAACAACAACTGACCAACTGTTGTACAGGCCCATC
AAACCCAAACCTGTACAGCCCGCCCTCTTTGTACCTTCCACGCAACAACC
CAGAACCTGCATTAAACCCTTTCAACGCTTACCATCTTCATCTTCGCCGT
CGCCTCAACCCTTATCTTCATCTTCGCTTGCGCCTCAACCCTTTCTATCT
TCGTCTTTGCCATCACCATCTCAGCCGTGTCAGTCTCAATCTTCACCGAC
TCCATCAGCGCCACCTGTCGCCTTGTCTAAGACAACGTACTACCGCCACA
AGCAAATGGAGTCGCAGACCGGCATGATTAAACCAAAGAGAAAATACAAC
TGCTCGCAGTGTGGTCAACCATGTGTACCGCCCCACACCCAGTACTATGG
CCCAAAGTACTGCCCTGTCAAGTGCGAAAAATCTTTTGACGATTGGTTGA
CATGGGCTAAGTGTGAAAAGCAAAAGAGGGATGccataaaaaaggcaaaa
aagaacaattagtttttttttagtttttttttttcgtttttttccttttc
tcttgTTTTTCGC Coding sequence (CDS) from alignment at sc0000216:193364..195176 >TCONS_00015782 ID=TCONS_00015782|Name=TCONS_00015782|organism=Clytia hemisphaerica|type=CDS|length=1761bp|location=Sequence derived from alignment at sc0000216:193364..195176 (Clytia hemisphaerica)
GACGTTCCAATTTACAGGTGTGCGCGAGGAAGCAATTCCCTGGAATCGTT
CCACAATCACCTTCGTGATTTTATTCCAGGCACATCAGCGAATGGCCTTC
ACTTCCAAGCCTTTCTCCTTGACGGTTTGTCACGCTGGAACACCGCGCGG
AAGGAAGCATTGCCAGAGGCTGGAACACGACCTGCAAACTTTCGCACCTT
CGACCACAAATTGACCAGCCGTTTCAACCAGCTTCACACGCACGTCTTGG
GGAAGCAGTATGTTGAAATGGAGGCACCCTCTGATGACACATCCGAGCTG
GTTGGCATGGAGTACTTCTTCAAAGAAGAAAAGGTCAACCTGAACGATGA
CAAGTACATCCAATCCAACCTTGGTGAAGATGATGATTCTGGTGTGGAGG
ATGAAATTGATGAAGGTGTCCCTCCAGAAACCAGTGACCAGCAAGTTGTG
GAGGAAAACGAGGAGTCCCAGCCTGATCAGGAGGACGAATCTGTTGACTC
CCTCGGCATCCCCGGATGGAACCGTGTCGACCATCTGGCCCGGGCACTCC
TTGGTGTTGAAGGCATCAGCGTGTCAAAGAAGAAGTGTGAGGAGATTGTT
GGACTGTTTGGGCTGCTTGAAGATTTTGACAAACGCCCAATGAAATTTGC
ACCCGTCAAAATGAAACCGGCAAAGGGCAAGTTCAAGCGGAAGCACAAGA
TGGGTGGAAATGCTCAAATTATTGCCATGCGCCGAGCTCACGTCACTGCT
GGTTACCCTTCCCTGTGTCCATCCAAGAACCGGTTAGTTGAGGCCATCTT
CATTCACCTGACGGCTAAGCACACTTCCAGCAGCACCATCACGTCACCCG
GGAACAAAAGAACAAACGAATCCCGATGGAAGAAGTGCATCCAAGACTAC
AAGTATGTGCAGGCCAGAGTTTCCAACAGTGACTTAAAGCACACCTTGAA
GATGTACCTGTTCAACGTGAACGAGACCACCCTGATGCACTGGCACAAGC
GCAAAGCCAGACGCGACGAAGCCAGCCTCCTCCTTCAGGGCAGATCGCTG
CCTGGCAATGTGACCAAATCATCAAAGGTAATGATTCCTACCACCATGAA
ATCAAACCCTGATGCTGGTACCAGGATGGCATTCACATTGCCAGTCAACA
CGTCTGGAAAACAGAAGCCATCATCACAGCCGAAGTCGACAGATCAACCG
AAACCACCACCGCCGTCGAATGAAGCTTTGTTTGCTGCCTCTCTGTTTTC
TCCATCAGTGGAGCCAACAACAACTGACCAACTGTTGTACAGGCCCATCA
AACCCAAACCTGTACAGCCCGCCCTCTTTGTACCTTCCACGCAACAACCC
AGAACCTGCATTAAACCCTTTCAACGCTTACCATCTTCATCTTCGCCGTC
GCCTCAACCCTTATCTTCATCTTCGCTTGCGCCTCAACCCTTTCTATCTT
CGTCTTTGCCATCACCATCTCAGCCGTGTCAGTCTCAATCTTCACCGACT
CCATCAGCGCCACCTGTCGCCTTGTCTAAGACAACGTACTACCGCCACAA
GCAAATGGAGTCGCAGACCGGCATGATTAAACCAAAGAGAAAATACAACT
GCTCGCAGTGTGGTCAACCATGTGTACCGCCCCACACCCAGTACTATGGC
CCAAAGTACTGCCCTGTCAAGTGCGAAAAATCTTTTGACGATTGGTTGAC
ATGGGCTAAGTGTGAAAAGCAAAAGAGGGATGccataaaaaaggcaaaaa
agaacaattag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015782-exon-sc0000216-1491911889:193364..195176 | TCONS_00015782-exon-sc0000216-1491911889:193364..195176 | Clytia hemisphaerica | exon |
| TCONS_00015782-exon-sc0000216-1510915933:193364..195176 | TCONS_00015782-exon-sc0000216-1510915933:193364..195176 | Clytia hemisphaerica | exon |
| TCONS_00015782-exon-sc0000216-1575043694:193364..195176 | TCONS_00015782-exon-sc0000216-1575043694:193364..195176 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000216 | supercontig | sc0000216:193364..195176 . |
Blast
The following BLAST results are available for this feature:
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